Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <----------DOF2                 <---------YAB1                                       <---------At4g35610 --ANAC46      --------->YAB1                        <---------GLK1(2)--------->At4g35610 -DOF2   ------>ZmHOX2a(1)<----------DOF2          <---------YAB1 <-----------HVH21            <-----   tatttgttctccttctctcattatagagctttagagcatttttagtttatattcagattgttatctaatgtcatctcgcagagcttttgttcacatttca  1579700                                           --------->ANAC55(2)                                           <---------ANAC58                         <---------ANAC58                         <------ZmHOX2a(2) <---------ANAC55(2)           <-----------GT1            ====================HOX2a_HOX2a<---------ANAC58            <---------YAB1          <----- <----------DOF2       <---------GLK1(1)<---------GLK1(2)   --------->ZAT14         <---------ANAC58 ------GT1  ------>ZmHOX2a(1)         ----------->ARR10     <---------ZAT14    --------->ARR14(2)   catcttttcttctccttcttagtagagatcagtttcagattagatacttgtccatattccactactctcgtctattatcggtttctgcttgtcaatttct  1579800                        --------->ATHB12                       --------->AHL20(2)                       <---------YAB1                   <---------AHL20(2)                   --------->AHL20(2)                 --------->AHL20(2)              <---------AHL20(2)               ---------->ID1              --------->AHL20(2)        <---------ALFIN1                                     <-------              --------->AHL20(1)     --------->ANAC46                                        <-------              <---------AHL20(1)  --------->ANAC46     <-----------GT1       ------>ZmHOX2a(1)        ----------->GT1<---------AHL20(2)  <----------DOF2<----------DOF2    --------->LBD16<-------- ----LBD16   --------->AHL20(2) --------->AtMYB61<---------DEAR3(2)        ----------->RAV1(2)   gggtccaaaattgaaataaatttatataattggaccacaacaccactttgtcggttttgacttttctacttggatgctcctgaacttcttgctccctttt  1579900                                                                     ------->PIF5                                                                     <-------MYC2                                                                     ------->MYC2                                                                     ------->MYC4                                                                     <-------MYC3                                                                     <-------PIF5                                                                     ------->MYC3                                                                     <-------MYC4                                                                    <---------PIF3(3)                                                                    --------->PIF3(3)                                                                    <---------TGA1a                                                                    --------->bZIP60(2)                                                                    --------->TGA1a                                                                    >>>>>>>>>>HY5                                                                    <<<<<<<<<<HY5                                                                    --------->O2                                                                    <---------bZIP60(2)                                                                    <---------O2                                                                 ---------------->PIF3(2)       -----                                                               --------->ANAC46                 <----                                                               --------->ANAC58               ------>MYB46(1)                                                             ---------->DOF2                  ------>MYB83  <-----------------AGL1                                     =================bZIP_DOF       --------  ----------------->AGL1      <---------LBD16               --------->AHL20(2)           <---------PCF2 ---DOF2              <---------ZAT6                     --------->WOX13(1)--------->ANAC58--------->MYB46(3) --DAG2           <---------ATHB12          --------->MYB52(1) --------->ANAC58          <---------PCF5 -DAG2          --------->WOX13(1)   --------->AHL20(2)------------>CBF    --------->ANAC58--------->DEAR3(2)   ctattacaaattgggaaacaatcagtgtgaattggggaataaaaaaaaacagaattgagcaattaaagccacgtggcaagaaatcgacgagggaccaacg  1580000                      --------->AHL20(2)                    <----------DOF2                    ------>ZmHOX2a(1)                    ================================HOX2a_HOX2a             ==============HOX2a_HOX2a             ------>ZmHOX2a(2)            --------->CCA1(2)            ===============HOX2a_HOX2a            <------ZmHOX2a(2)                                                       <---------AHL20(1)           <---------ARR11(3)                                                       --------->AHL20(2)           --------->ARR11(3)                  --------->MYB52(1)                   --------->AHL20(1)           --------->ARR14(2)                 ----------->HVH21                     <---------AHL20(2)           <-----------ARR10          ------>NtERF2                              --------->YAB1 -->MYC3   <---------ARR14(2)        --------->DEAR3(1)                       --------->YAB1       <- ---MYC3   <---------AGP1       --------->MYB52(1)    *TSS                ----------->GT1          -- ->MYB52(1)--------->AGP1  <-----------GT1   ------>ZmHOX2a(2)     <---------HSFB2a(2)           ----   tgtttgtctgcaagatctaatccttttattaacaaaacggcgactgatctaacgggaaacttttaaaatcgagaaattgttaataataaattcaactact  1580100              --------->WOX13(1)            <---------YAB1           --------->TOE2(3)          --------->YAB1          <---------ICU4         <---------YAB1       --------->YAB1                                                                             <--       <---------ICU4                            --------->ZAT14      --------->ANAC58           <---      --------->ICU4                  ------>ZmHOX2a(2)               --------->ANAC58           <--- --------HSFB2a(2)                  <---------ARR11(3)      --------->WOX13(1)          --------->ANAC46 ------->HSFB2a(2)                  --------->ARR11(3)    <---------ATHB12             ============== ------->RAV1(2)               <----------DOF2   <---------ZAT14    ---------->DOF2    ------>ZmHOX2a(1)   tctgggccatcatcatcaatcttgttcgtcttccttttgatcttatcaaactacagtcaaatcactcagagaaagctactaggtctctcctcgacatttg  1580200                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                             --------                                                                                             --------                                                                                             xxxxxxxx                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                          <---------SPL7                                                                                         <---------MYB46(3)                                                                      <---------ZAT6    <------------                                                                 <------MYB46(1)        <---------AtMYB61                                                                 <------MYB83           <------------                                                             --------->ATHB12         <---------MYB46(3)            ----------->GT1                                  <---------MYB46(3)      <---------DEAR3(1)         <------ZmHOX2a(2)                                  --------->WRKY38(1)      --------->ALFIN1 --------DOF2                                              <---------MYB52(1)        <---------AtMYB61 ------ANAC58                               --------->AHL20(2) <---------WOX13(1)  <---------MYB46(3) ------ANAC58      <-----------GT1  ----------->GT1   <---------ARR14(2)          --------->ALFIN1--- ===============HOX2a_HOX2a       ----------->GT1     --------->ARR14(2)          <---------AtMYB61   ctttcaattcgatccagtaattttcttctcatcggagagagaaaaaaaaaatggaagacccgttgattggtagagatagtcttggtggtggtggtacgga  1580300    --------->MYB52(2)   <-------TEIL ---ZmHOX2a(2)                                       <---------ALFIN1 ---->ARR14(2)                                      --------->ZAT14 -----ARR14(2)                                      <---------ZAT14 ->ANAC58                                           --------->ZAT18 ->ANAC58              <---------ANAC55(2)          <---------ZAT18 xxxxxxxx>smallRNA(se3)--------->ANAC55(2)       <---------ZAT2 --ANAC55(2)           --------->ANAC58          <---------At4g35610 ->ANAC55(2)           --------->ANAC46          --------->ZAT2 >SPL7                 --------->ANAC58          --------->At4g35610 ---AtSPL8 --------->YAB1                  ---------->DOF2      ------>ZmHOX2a(2) ---AtSPL3<------ZmHOX2a(2)             <---------HSFB2a(2)   <---------AGP1          --------->ANAC46 --->ZmHOX2a(2)    <-----------HVH21    --------->HSFB2a(2)   --------->ARR11(3)    <---------ALFIN1   tcgggttcgtcgatcagaagctatcacgcatggtactccgtttcagaaagcagctgcactcgttgatctggttctcttattctcttacaccctaattttg  1580400                                                                            <-----------GT1                         --------->DAG2                                    <-----------GT1                        ---------->DOF2             ------>NtERF2         <---------AHL20(2)                 <----------DOF2          <------ZmHOX2a(2)            ------->TEIL           <----------DOF2      <---------------AGL15          --------->GLK1(2)         ------>ZmHOX2a(1)     <-----------------AGL3         <---------GLK1(2)   aattcgttttcctctttgacttttcaaaaagtttctatacatggatcacatcgcctccaagagagattctatgtattttatcagttcattaagtcagtgt  1580500                                                                                      --------->ANAC55(2)                                                                                      --------->ANAC46                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                               --------->ARR11(3)                                                                               <---------ARR11(3)                                                                              <---------GLK1(1)                                                                              <---------CCA1(2)                                                                        <---------ANAC58                   ------->TEIL         --------->GLK1(1)    <---------WRKY38(1)      --------->ANAC58      <---------At4g35610           <---------WOX13(1)<------ZmHOX2a(1) <---------ANAC58      --------->At4g35610        <---------YAB1      --------->ICU4     <---------ANAC46      <------      <---------ZAT2           <---------At4g35610  <---------TOE2(3) <---------ANAC46--------->ANAC58      --------->ZAT2        <<<<<<<<<TBF1     <---------ANAC46     <----------DOF2 ------>ZmHOX2a(1)   ttttgttaagctgagaagatgaatcgtttcttcttctgagtgatttcttcgtataaggattagtcaatgcttttgtgtgtatatcctcacgaaattagca  1580600  Previous    Next  AGI:  At4g03550.1    Description:  ATGSL05 (GLUCAN SYNTHASE-LIKE 5); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups. similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL1 (GLUCAN SYNTHASE LIKE-1), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G04970.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to hypothetical protein OsJ_002874 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13049.1); similar to 1,3-beta-glucan synthase component-like [Oryza sa Range:  from: 1573346    to: 1579694    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g03560.1    Description:  ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel. similar to calcium channel [Oryza sativa (japonica cultivar-group)] (GB:BAC80148.1); similar to two-pore calcium channel [Nicotiana tabacum] (GB:BAD15099.1); similar to two-pore calcium channel [Nicotiana tabacum] (GB:BAD15100.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ion transport; (InterPro:IPR005821) Range:  from: 1580054    to: 1585964    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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