Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------YAB1         --------->YAB1         <---------ICU4        <------ZmHOX2a(2)                                                             ---------->DOF2        <---------ATHB12                                                   <---------TOE2(3) --------->DOF2----------->HVH21     <----------DOF2                     ------>ZmHOX2a(1)       ---- -----ZmHOX2a(2)                  <---------ARR11(3)                 <---------ARR11(3)     <-------- ------>ARR11(3)               --------->HSFB2a(2)                   --------->ARR11(3)   ---------->DOF2 -------ARR11(3)          <<<<<<<<<TAC1     --------->MYB52(1) --------->YAB1<------ZmHOX2a(1)   ----   gatcaagccgatcatcactgacataaacactgtctagagctttgtctaacagatagcaaaacccttcataatatcctaaggatgctccaaaagaaagaca  1535300                                                                            -------->HAHB4                                                                            <---------ICU4                                                                            --------->YAB1                                                                         --------->YAB1                                                   --------->ARR11(3) <----------DOF2                                                  --------->YAB1 --------->MYB52(1)                <-          <-----------GT1                        <---------YAB1 ------->GAMYB                   <----  ------>ZmHOX2a(1)                         ------->TEIL       <---------MYB55(2)               -----  <----------DOF2                      <---------At4g35610     <---------MYB52(2)           <-------- ----->ANAC58                          <---------ZAT2          --------->MYB46(3)           --------- --ID1   <-----------GT1               --------->ZAT2        ----------->RAV1(1)        <-----------HVH21 ----->ANAC58                          --------->At4g35610--------->AtLEC2 <---------YAB1 <---------WRKY38(1)   agtcctttttttttccagtctcaacctctctcagacagcctagctgaatctatgatatcgatgcaacaaacgctttaataatagctaagtggtcagcacg  1535400                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     --------->ARR11(3)                                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <XXXXXXXXXXXXXXXXXXXX                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxx                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxx                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxx                                    --------->ZAT6         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  --------->YAB1           <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                 <---------AHL20(2)    --------->DAG2           <xxxxxxxxxxxxxxxxxxxx -----ZmHOX2a(1)                --------->AHL20(2)    ---------->DOF2           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---PIF5                      <---------AHL20(1)   --------->HSFB2a(2)          <XXXXXXXXXXXXXXXXXXXX -->PIF5  <---------ANAC46    --------->AHL20(1)   <---------HSFB2a(2)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -At4g35610                   <---------ARR11(3)   --------->TOE2(3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >At4g35610             --------->TOE2(3)    <---------ARR11(3)             <---------WRKY38(1)   aggaagaacatggtttggagagccattctcaatatataatactacaatttcttccataaagccccttcttatatcgagtcaacaaaacatctcgtcccca  1535500                                                                                                 ----                                                                                           --------->HSFC1(2)     <-----------HVH21                                                                     <---------HSFC1(2) xsmallRNA(i)                                                                              <---------HSFB2a(1) xsmallRNA(s)                                    ----------->GT1                         <---------GLK1(2) xsmallRNA(l2)                                <---------STY1(2)                         <---------At4g35610 xsmallRNA(le3)                   <---------ARR11(3)            --------->ZAT2          --------->At4g35610 XMIR447A/B                    <---------HSFB2a(2)              <---------ZAT2        <-----------RAV1(2) xsmallRNA(s2)                 --------->HSFB2a(2)        --------->ANAC46         ----------->HVH21 xsmallRNA(fl3)       --------->YAB1          --------->STY1(2)------>MYB46(1)    <xxxxxxxxxxxxxxxxxx xsmallRNA(se3)      <---------ATHB12      --------->ATERF1(1) ------>MYB83      <xxxxxxxxxxxxxxxxxxx xsmallRNA(si3)      --------->ICU4   --------->ALFIN1    --------->ANAC58     <---------LBD16 <----- XMIR447C       --------->ANAC46  --------->ARR11(3)      --------->ANAC58     <-----------RAV1(2)   aataatgtgtcagaatacaaacaatgatcaactcgagaacttggggctggctagaaaaacacaccaagctcgaagacaataccaggggacagatgcttcg  1535600   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ANAC46   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          --------->At4g35610  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        <---------ZAT2  <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  ----------->TGA1  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       *TSS   --------->DAG2 ----->DOF5.7(2)                                     --------->GLK1(2)      <---------At4g35610 xxxxsmallRNA(fl3)                       ----------->GT1--------->ALFIN1   ------->TEIL        ------ xsmallRNA(fl3)                 --------->DAG2    <---------TOE2(3)  ----------->HVH21        ------- ----ANAC46                    ---------->DOF2    <---------YAB1 ---------->DOF2          --------->At4g35610   tttactcgacattgtaaggggattaatggatgaaaaagtagtattgtatattaagaatgtgttgatataaagtgacgaagctgataccaagtagcagaaa  1535700           --------->GLK1(2)          --------->ARR14(2)      --------->ANAC55(2)      <---------TOE1(1)      <---------ANAC55(2)     <-------TEIL --------->STY1(2)              <------------CBF    --------->CCA1(2)                      <---------At4g35610             ----------->HVH21    --------->ARR14(1)                     ----------->RAV1(2)           <------MYB83   --------->TOE1(2)                       --------->At4g35610           <---------At4g35610   --------->ARR14(2)                      --------->ZAT2                ----------->GT1   <---------ARR14(2)                     ------->TEIL                   <------MYB46(1)   --------->ARR11(1)                   ------->GAMYB                  <-----------RAV1(2) ----------->ARR10<---------STY1(2)    --------->ANAC58        >>>>>>>>>>>>>>>>>LFY --->DAG2 <---------GLK1(2)            --------->ANAC58        <<<<<<<<<<<<<<<<<LFY     <---------GLK1(2) --->DOF2 <---------ARR14(2)   --------->HSFB2a(1)       ---------->DOF2 --------->At4g35610   gtgaagatacgagattctctagctactctgcaaaccttctaacgcacctgaaattgaaacaaagcatccaatggcaggtgaaactgttcagaattttcaa  1535800                                                                   <-------TEIL                     <---------YAB1                       <---------GLK1(2)            ------>MYB46(1)                       <---------HSFB2a(1)            -------->P--------->YAB1 --------->HSFB2a(2) <---------ZAT2            ------>MYB83             <---------HSFB2a(2) <---------At4g35610         --------->MYB46(3)--------->At4g35610    --------->HSFC1(2)                           XXXXXX    --------->HSFB2a(2)   --------->ANAC58        --------->HSFB2a(1)    ------>ZmHOX2a(1)    -------    <---------HSFB2a(2)   --------->ANAC58  ---------->DOF2       <-----------GT1         -----------   atgtttacagaaccaactccacgatgataagcagcatttatagaaacaaagaaggctccagcttctatatacatcctctaagtaagaaggaatggtaaaa  1535900                                                   --------->MYB46(3)                                                --------->TOE1(2)                                            --------->CCA1(1)    <---------ANAC58   --------->ANAC46                         --------->RVE1(1)    <---------ANAC58   --------->ANAC58                      <---------ICU4   <---------ANAC58   --------->ANAC58                      <---------AHL20(2)      <---------ANAC46             ------- XXXXXXXXXXXXXX>MIR863-3P               --------->AHL20(2)<---------ANAC46                   <------- --->DOF2      ---------->DOF2    ----------->GT1--------->MYB52(1)   ------->TEIL         --------->WOX13(1) >GT1   --------->ICU4---------->DOF2 --------->YAB1      <---------ANAC58         <---------YAB1   gaaacaagacatgatcaaaaagaagaaagcattcaatggataataaatatccaacgacttgctggtttcttgaacgtgatatgttgttattgtcaatcaa  1536000                                                                      ------->MYC3                                                                      -------->ABF1                                                                      <-------MYC3                                                                      <-------MYC2                                                                      ------->MYC2                                                                      ------->MYC4                                                                      <-------MYC4                                                                     ========================bZIP_DOF                                                 --------->ARR11(3)  <---------TGA1a            -----                                                 <---------ARR11(3)  ==============================MYC_MYB                                    --------->ZAT14                  --------->TGA1a           <-----                            ------->TEIL ---------->DOF2             <---------O2             -------                   ----------->RAV1(1)   ======================================bZIP_DOF    <-------GAMYB <---------ZAT14  --------->ANAC46  <---------ZAT14                  --------->ANAC55(2)  <---------MYB46(3) -->YAB1     --------->ARR14(2)     --------->ZAT18                  <---------ANAC55(2)  ----------- --ATHB12    <---------ARR14(2)     <---------ZAT18                  --------->O2 ---------->DOF2   gagtatagttttgcagaaacacaacatatgtatatgggtgtactaaagaaacatctctccatactctaaacacgtgtcttcgaaaaaagaggtcgttata  1536100  <---------ANAC58  <---------ANAC58                                              <----------DOF2  <---------ANAC46                                             <---------ANAC58 ---->YAB1                         ---------->DOF2             <---------ANAC58 ----YAB1    --------->AHL20(2) --------->ANAC58            --------->GLK1(1)                       < -->AHL20(2) --------->YAB1     --------->ANAC58            <---------GLK1(1)                       - >GT1     --------->WOX13(1)   ------->TEIL        <----------DOF2                       <-------TEIL   ataggcttgtagcaattaaaaccccagactttgtacccaaagctaagtttgggatttttgggatttctttccaactctcttctaatttagtttcattttt  1536200  Previous    Next  AGI:  At4g03455.1    Description:  MIR447B; miRNA Range:  from: 1535424    to: 1535659    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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