Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------ARR11(3)                                                                          --------------->AtSPL8                                                                          --------->ANAC46                                                                       <---------ZAT14                                                                       <---------REM1(2)                                                       --------->ANAC58--------->ZAT14                                               ------>ZmHOX2a(1)       <-------TEIL              ----                                         <---------ARR11(3)          <---------ZAT18             <---     <----------DOF2                --------->ICU4     --------->ANAC58--------->ZAT18       <------- ------>HVH21                     ----------->GT1-------->P        <---------------AtSPL8    <------- ----AtSPL8               <----------DOF2--------->ARR11(3)     <---------MYB52(1)           --------   gaccattctttgagaaacattcaaactgctttcaagaagtgattatctcctaaccagacgaaaactgttagggtacacagtacatctttggaatttaggt  1500800                        --------->ZAT14                        <---------ZAT18                     <---------MYB46(3)                     <------MYB46(1)                     <------MYB83                    --------->MYB111(1)           <---------ARR11(3)                    <---------DEAR3(1)      --------------->AtSPL8                    --------->MYB111(2)  --------->ZAT18                         <---------ZAT2                    --------->MYB46(2)   <---------REM1(2)                 --------->ARR11(3)       --------->WOX13(1)   <---------LBD16 --------->ANAC46               <-----------ARR10     <---------YAB1 --------->MYB55(2)   <---------ZAT14                   <---------ARR11(3) ----->ZAT18        <---------AtMYB61    --------->ZAT14                   --------->GLK1(2) ----TEIL           <---------MYB46(3)   <-------TEIL<----------DOF2 ----------->GT1  <-------------- --TOE2(3)         <--------P         <---------ANAC58           ------->GAMYB   <---------At4g35610 --------AtSPL8    <---------MYB55(1) <---------ANAC58          <---------ALFIN1 --------->At4g35610 ->MYB59         <---------MYB46(3)  <---------------AtSPL8   ----------->RAV1(1)--------->ZAT2     -   acacagtatcattcatccctggttggtgaactcggaatttgggtacacagtacatctttggatgcaacacacagaaaaatctaagctgtccccatacgga  1500900           <---------ANAC46          --------->ALFIN1        <---------ANAC58        <---------ANAC46       <---------TOE2(3)      <---------DOF5.7(2)    --------->DOF5.7(2)   --------->TOE2(3)  <--------HAHB4  --------->ATHB12                        ------>ZmHOX2a(1)  --------->YAB1                         --------->TOE2(3)  <---------ICU4                <---------ANAC58                                --------->ANAC55(2)  -------->ATHB1      <-----------------AGL2--------->MYB52(1)             --------->TOE1(3) <---------ATHB12   <-----------GT1      --------->TOE1(3)                 --------->TOE2(3) ---AGL1<---------ANAC58        <---------ANAC46                     --------->ANAC46   <-----------GT1 ------>TEIL <---------ANAC46   <---------ANAC58   --------->YAB1  ----------->RAV1(1) <-----------GT1   tgaatcattaacgtggtgtatttgactacatttggcttggcctccttaacgaatcatattgcagaaaaaccacataaccttcatgtaattttcccttctt  1501000               --------->ZAT14               <---------ZAT14          <---------ATHB12                                       --------->ANAC58        --------->WOX13(1)                                ---------->DOF2                     <------  --------->GLK1(2)                             <---------ARR14(2)                        <----------  --------->ARR14(2)                            <---------ARR11(1)                     <------------CBF  <---------ARR14(2)         ---------->DOF2    --------->ARR14(2)                    --------->ATHB12 <---------ARR14(2)    --------->ANAC58         --------->ARR11(3)                    <---------ICU4 <---------GLK1(2)     --------->ANAC58         <---------ARR11(3)             ----------->RAV1(2) --------->ARR14(2)    --------->ANAC46        <---------CCA1(2) --------->ANAC58    <---------YAB1   gcagaatctccaatcactaaactacaagcctgaaagtcacttctcatccaaatcttgatacaaagctaggcaatactcaaaacctgcatcattgtcatat  1501100                                                                             <---------GLK1(2)                                                                      ------->GAMYB                                                                     <------------AtMYB77                ------------>CBF                                     --------->MYB46(3)             --------->TOE2(3)                                       <---------MYB52(2)             <---------MYB59                                        <---------At4g35610           ------>MYB46(1)                                          --------->At4g35610           -------->P                       --------->ANAC58       *TSS   --------->ANAC46      <----  <-----------GT1                           --------->ANAC58    ------>ZmHOX2a(1)            <------- ---CCA1(2)------>MYB83               <-------GAMYB            --------->TOE1(2)       <-------TEIL -HVH21--------->ANAC46        <---------ICU4                 ------>ZmHOX2a(2) --------->TOE2(3)   catttctctaccctaccttacaatactccttgatcatgcctgttgtaagtaacatgtagtctgatcctgcaactgcccacaatctcaaatacatgctttg  1501200      <---------ATHB12                                                     --------->ANAC58    --------->WOX13(1)                                                     --------->ANAC58  <---------ATHB12                                 <-------TEIL           --------->SPL7 -------HVH21    <---------At4g35610            <---------ANAC58        <---------SPL7 ---DOF2      ---------->DOF2--------->GLK1(2)  <---------ANAC58       <---------DAG2    ------>ZmHOX2a(1)   tcaaatcaatgaaacatcaagctcaccagagaatttgaagtatgcaaattgggttcaatcccattttctcttaccttacgcctaaaccctcctctaccat  1501300                                                                                                    <                                                                                          --------->YAB1   --------->AtMYB61                                       <---------AHL20(2)          ------>ZmHOX2a(1)  --------->MYB46(3)                                      <---------AHL20(2)      ------>MYB46(1) ---  <---------ATHB12   --------->YAB1                  <---------MYB59      --------->YAB1 <---------ATHB12 ------>MYB46(1)  <---------ICU4               ---------->DOF2<-----------GT1     ------>MYB83    <-- ------>MYB83    --------->ICU4            --------->YAB1 --------->AHL20(2)    --------->TOE2(3)---- -------->P    --------->YAB1         --------->AHL20(2)  <---------AHL20(1)    <---------MYB59  ----   tccaaccattccaaaactcataatcagagaattggccaaaaaaaatcagaaaagacccaatttttttctaatttgatcacaacctaatcctatcaacatc  1501400                                   <---------ANAC55(2)                                   --------->ANAC55(2)                                  <-------TEIL                                <---------ARR14(2)        ---------->DOF2         --------->ARR14(2)                                            <------     ------>MYB83              --------->GLK1(1)                                          -----------     ------>MYB46(1)           <----------TaMYB80             <----------DOF2            ------>NtERF2   <---------MYB59             <---------GLK1(1)      <------ZmHOX2a(2)                  --------->LBD16 ---------DOF5.7(2)            --------->CCA1(2)     <---------ARR11(3)               ------>MYB46(1) ------>DOF5.7(2)             <---------ARR14(2)     --------->ARR11(3)               ------>MYB83 -------MYB52(1)              --------->ARR11(3)    --------->YAB1    ------->TEIL --------->HSFB2a(1) ----->TOE2(3)                --------->ARR14(2)   --------->ICU4  <---------YAB1<-----------GT1 ----->TOE1(3)             <---------TOE2(3)     ---------->DOF2<---------AHL20(2) <---------HSFB2a(1)   gttaaccaaacaaagccaatacatttaccaaggatatacgtatgcatattgcaaagatcacccgattttatgaatttcagaaaaaaccttccgcctgatt  1501500                                                                                --------->MYB52(1)                                 --------->ATERF1(1)                  =========================HOX2a_HOX2a                                 <------NtERF2                        ------>ZmHOX2a(2)                                <---------ATERF1(1)                  <------ZmHOX2a(2)                                --------->LBD16                      ==========================HOX2a_HOX2a                               <---------DEAR3(1)                   --------->ARR11(3)                               <---------ANAC46                     <---------ARR11(3)                              <---------LBD16                       --------->ARR14(2)                              --------->At4g35610                   <---------ARR14(2)                          --------->ARR14(2)                        <---------AGP1                          <---------ARR14(2)          ======================HOX2a_HOX2a        ------                        <---------RAP2.6(3)           ------>ZmHOX2a(1)      --------->AtMYB61 ------                        <---------SPL7                =======================HOX2a_HOX2a<------ZmHOX2a(1)                       <---------ANAC46        --------->ZAT14      --------->AGP1     <------MYB83 ---GLK1(2)            <---------ANAC58       <---------ANAC46     <---------CCA1(2)   <------MYB46(1) >RAV1(2)              <---------ANAC58       <---------REM1(1)  --------->HSFB2a(2) <--------P------   ctcttgaatcgttttgatcagactgccgtatcggcggagaccacgatggtgtagtccttgaacatgtctagatcttaaaccaaaacggtaggactcgaag  1501600                                       <xxxxxxxxxxxxxxxxsmallRNA(se3)                                       <---------ARR14(2)                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <------ZmHOX2a(1)      -------->P                      xxxxxxxxxxxxxxxxxx>smallRNA(le3)                   <----------DOF2                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)               <------ZmHOX2a(1)                     xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <------MYB46(1)                     xxxxxxxxxxxxxxxx>smallRNA(s)                   <------MYB83       ------>ZmHOX2a(1)<<<<<<<<<<<<<<<<<LFYxxxxxxxxxxxxxxxxx>smallRNA(fl3)      *TSS         <-----------HVH21   --------->ARR14(2)         <--------P --->ANAC46      <---------ZAT6 xxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxx>smallRNA(fl3) --->ANAC58     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------CCA1(2)      <---------RAP2.6(2) --->ANAC58     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxx>smallRNA(s)           <-----   caactggtcctatggtctagtggtcaggacattggactctgaatccagtaacccgagttcaaatctcggtaggacctttgttttcggcttcggttttgag  1501700  Previous    Next  AGI:  At4g03410.1    Description:  peroxisomal membrane protein-related. similar to peroxisomal membrane protein-related [Arabidopsis thaliana] (TAIR:AT1G52870.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO39226.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) Range:  from: 1501167    to: 1503560    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g03405.1    Description:  pre-tRNA. tRNA-Gln (anticodon: CTG) Range:  from: 1501606    to: 1501677    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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