Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->ANAC55(2)                                              <---------ANAC55(2)                    ----------->GT1       <-------GAMYB                  ----------->GT1        --------->ALFIN1                 --------->DAG2      <---------ANAC46               ---------->DOF2       <---------ANAC58             ----------->HVH21       <---------ANAC58           --------->At4g35610     <-----------HVH21                                           ------           <---------At4g35610    <----------DOF2            <----------ID1        <---------REM1(2)         <-----------RAV1(2)   ----------------->AGL1        <------ZmHOX2a(1)     <---------ZAT14   tcagagaccactcaggtgaaaggtgaaaaactggccctttcgggtgttacatactttggaataggaacaagtctcttatcgagtctacacttatatgaat  1465900                                                                                                -----                                                                                                <----                                                                                           <---------                                                                     --------->YAB1     <---------LBD16                                                                     <--------ATHB1   --------->GLK1(2)                     <---------CCA1(2)                              --------->ICU4   --------->KAN4(2)                   <---------ANAC58               --------->YAB1    <---------ATHB12<---------KAN4(1)           <-----------HVH21             --------->GLK1(1)<---------ANAC58    <---------At4g35610   <----------DOF2 <---------ANAC58    --------->ZAT14    <---------ANAC46    --------->At4g35610---- ->TEIL   <---------ZAT6             --------->ANAC46     <---------ANAC58 ---------->DOF2 <---------MYB52(1)   ttagtctttttagtgtcagtgtcttatctcatgtgtaacacagaactctctatgagagtagcttataccaatgattttaaagctgaataatccggtcgga  1466000                                                ------->TEIL                                                <---------ARR14(2)                        <------ZmHOX2a(2)       --------->ARR14(2)             <---------------AtSPL8            <---------ARR14(1)     <----------DOF2      --------->ATHB12--------->At4g35610      <---------CCA1(2)     <---------ANAC58 ---->ARR14(2)    --------->ANAC58          ------->TEIL             <---------ANAC58 -----ARR14(2)    --------->ANAC58     --------------------->WRI1 <---------WOX13(1) --HVH21    ---------->DOF2     <---------At4g35610        <---------MYB46(3)   <---------AHL20(2) ----->GLK1(1)   --------->ZAT18--------->At4g35610     <-----------RAV1(1)     --------->AHL20(2)<--   tttgtccatgatttgaaagtacgcagatcaattcagctctatattgaacgtatctcacatgttgttggattgctttgcgaatttaaatacttcaaacatg  1466100                                                             <---------ALFIN1                                                            --------->ZAT18                                                            <-------TEIL                                                    <----------DOF2                                                 ------->GAMYB                                                 --------->DEAR3(1)                                                --------->MYB46(3)                                                <------------MYB.PH3(1)                             <        <---------AHL20(2)                    --------->MYB52(1)                                   --        --------->AHL20(2)                    --------->ARR14(2)     <---------AHL20(2)            <-       <---------AHL20(1)                     <---------ARR14(2) ----------->GT1                <----       --------->AHL20(2)                  --------->YAB1   <---------WRKY12                 <-------       <---------AHL20(2)            <---------MYB59<---------DAG2   --------->AHL20(2)     <-------GAMYB --------DOF2                  --------------->AtSPL8      <<<<<<<<<<<<<<<<<LFY     <---------AHL20(2)   cttttgtaatttaattttagtctattggtagactttgtacataactcataaccgccttaaggtccactggtttaattacattgaattttttttcggttaa  1466200                                                                                ------------>CBF                                                   <---------TGA1a          ------>MYB83                                                   <---------O2             ------>MYB46(1)                                                   --------->TGA1a        ------->GAMYB                                                   --------->ANAC46       --------->AtMYB61                                        <------------CBF                 --------->MYB46(3)                                       --------->ATHB12                 ------>MYB46(1)                                       --------->ATHB51                 ------>MYB83                                       <---------ICU4                   -------->P                                      --------->ICU4                   --------->MYB55(1)        <---------ICU4              <--------HAHB4 ==============================MYC_MYB       <---------ATHB12             <---------ICU4 --------->ANAC58   --------->MYB46(3)       <---------YAB1               --------->YAB1 ===============================MYC_MYB <---------PCF2              --------->DAG2        --------->O2       <---------MYB111(1) ---------ATERF1(1)         =================================bZIP_DOF <---------MYB59<-----------HVH21 ------->ZAT18              ---------->DOF2        --------->ANAC58   <---------MYB46(2) --------ZAT18      <------ZmHOX2a(1) <---------YAB1        ----------->RAV1(1)--------->YAB1 -----ANAC46   <---------ALFIN1    <---------YAB1  --------->bZIP60(2)<---------MYB111(2) --MYB52(1)    ----------->RAV1(1) --------->ICU4<---------ALFIN1    --------->DEAR3(2)         <----   gtgggctccatgattccccacaggacataaaaaagtgatcattattggagaccacgtctctgcaacatggtaccaaccaaatcacaatgtcagtaatttt  1466300                                                           <---------At4g35610                        <---------ANAC58                   --------->At4g35610               <-------          <----------DOF2          *TSS                    <---------ZAT2              <<<<<<<<<<<<<< -------GT1             <---------ANAC58  <---------WRKY18(1)    --------->AHL20(2)  <-----------GT1   acattccatcttctttacaaagtcttccttggtcttgaaactcttgactggttctaaacacagctcattatatgtctatttagtattttacacattggtt  1466400                                                 --------->AtMYB61                                                --------->MYB46(3)                                                <---------MYB55(2)                                                <---------MYB111(2)                                               -------->P                       <---------ARR11(3)                                               ------>MYB46(1)                --------->ANAC58              <---------ARR11(3)             --------->AtMYB61     ------>NtERF2--------->AHL20(2)  <---------RAP2.3(3)               ------->GAMYB------->GAMYB  <---------At4g35610        <---------ICU4  <---------DEAR3(1)               --------->MYB46(3)    <---------TOE2(3)    --------->ANAC46 --------->RAP2.6(3)          <-----------HVH21------>MYB83     --------->At4g35610       <---------ATHB12 --MYB46(3)   --------->ARR11(3) --------->WOX13(1)   <---------YAB1          --------->ANAC58 <<<LFY   ---------->DOF2 <-------TEIL      --------->MYB46(3)  ------>ZmHOX2a(1)         --------->ICU4   tcagacggctcttaaaggtctctctagcttcatgtcaaccatctaaaccaaccaccattaatgttcctctgcccattttcaagaaattagaaatcatttt  1466500                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                  <------NtERF2                 ------>NtERF2                                      --------->AtMYB61             ------>ZmHOX2a(2) <---------CCA1(2)                ---------->DOF2     <---------ARR11(3)    <---------ARR11(3)         <-------TEIL --------->MYB46(3)     --------->ARR11(3)    --------->ARR11(3)        --------->CCA1(2)               ----------->HVH21   tctctaagttcttgatcgtcgccatgaacgatcttatctcaagctcattcaagagatacacagacttaaaccaccaggtccaactcgatgacatcgagtc  1466600                                                --------->ETT(2)                                  --------->ARR11(3)      ---------->DOF2               --------->YAB1                         --------->TOE2(3)      <---------ETT(2)              <---------ETT(2)                       -------->P <---------ARR11(3)  <---------ZAT6          --------->ETT(2)                   --------->ANAC46        <---------GLK1(1)                <-----------HVH21                   --------->ANAC58       <---------ARR14(2)             --------->At4g35610                   --------->ANAC58       --------->ARR14(2)             <---------At4g35610                 <-----------RAV1(2) <----------DOF2  ----------->GT1 ---------->DOF2  <-------TEIL   tcaaaatgtttctcttgattcaggcaacctcgatgagttctttggatatgtcgagagtgttaaagaagacatgaaagctgtcgacgagattcataagcgt  1466700                                                         <---------ANAC58                        <---                                                         <---------ANAC58                        ----                                                         <---------ANAC46                       <----                                                        <-------TEIL                            <----                                                     --------->HSFC1(2)                         -----                                                     <---------HSFC1(2)                         <----                                            <---------ANAC46                           <---------ARR11(3)                                            <---------ANAC58                           --------->ARR11(3)                                <---------YAB1       <---------HSFB2a(1)     <---------ZAT6     <----                         --------------->AtSPL8      --------->HSFB2a(1)    >>>>>>>>>TAC1       <----           <---------ATHB12  <-------TEIL   <---------ANAC58          <---------ARR14(2)        -----    <---------ARR11(3)   --------------->AtSPL3--------->REM1(2)      --------->ARR14(2)        =====   ctccaagatgctaatgaagagtccaagaccgtacatgattccaaggccgtgaagaagcttcgtgctcgtatggattcgagtgttacagaggtcttgaaac  1466800  Previous    Next  AGI:  At4g03320.1    Description:  TIC20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV); P-P-bond-hydrolysis-driven protein transmembrane transporter. similar to TIC20, P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G04940.1); similar to unknown [Populus trichocarpa] (GB:ABK93337.1); contains InterPro domain Chloroplast protein import component Tic20; (InterPro:IPR005691) Range:  from: 1464466    to: 1466164    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g03330.1    Description:  SYP123 (syntaxin 123); SNAP receptor. Identical to Syntaxin-123 (SYP123) [Arabidopsis Thaliana] (GB:Q9ZQZ8); similar to SYP124 (syntaxin 124), SNAP receptor [Arabidopsis thaliana] (TAIR:AT1G61290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24123.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 1466335    to: 1467749    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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