Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <<<<<<<<<<GT-3b                                     --------->AHL20(1)                                     <---------AHL20(1)                                 <---------AHL20(2)                      <---------AHL20(2)                                --------->AHL20(1)                      --------->AHL20(1)                                --------->AHL20(2)                      --------->AHL20(2)                                <---------AHL20(2)                      <---------AHL20(2)         <---------YAB1     <---------AHL20(2)                      --------->AHL20(2)   --------->AHL20(2)       --------->AHL20(2)                      <---------AHL20(2) --------DOF2             <----------DOF2                           <---------AHL20(1) -------DAG2     ----------->GT1<---------AHL20(1)    <<<<<<<<<<<<<<<<<LFY                    ------- ------GT1  <---------YAB1--------->TOE2(3) <----------DOF2        --------->AHL20(2)     <-------TEIL   ctttttaaaatatgatttttggtaaaaactttaatttaatatttttctttggaaaataacattgggctattaaatttaatagtggtgaaagattcaatgc  1439700                     --------->ARR11(3)                     <---------ARR11(3)                     --------->ARR14(2)         --------->YAB1                  <------ZmHOX2a(1)          --------->YAB1            --------->CCA1(2)     --------->ANAC55(2)            --------->GLK1(1)     <---------ANAC55(2)            <---------GLK1(1)     <---------ANAC55(1)           --------->ARR14(2)     <---------ANAC58                             <---------AHL20(2)         --------->LBD16          <---------ANAC58                            --------->AHL20(2)       <------NtERF2 <---------ARR14(2)     <---------AHL20(2)                <---------AHL20(2)       <---------At4g35610      <-----------GT1 <---------ICU4                <---------AHL20(1)       <---------LBD16    --------->YAB1    --------->AHL20(2)          <---------TOE2(3)      ------>NtERF2----------->ARR10 ------->TEIL ----------->GT1    <---------ATHB12         <------    <---------ABI4(2)<---------GLK1(2) <---------MYB59     --------->ATHB12   --------->AHL20(1) <--- -->AtLEC2 <---------ARR14(2)<---------ICU4--------->AHL20(2)      --------->WOX13(1)     <---------LBD16   aagaatggcaccggatatgaggagattttcatatttacgtgcctaattaataatgtgaaactgattagccaattaagaaataaaatttgtattggggatt  1439800                                                                 ----------->HVH21                                                                ------->MYC2                                                                <-------MYC2                                                                ------->PIF5                                                                <-------MYC4                                                                ------->MYC4                                                                <-------PIF5                                                                ------->MYC3                                                                <-------PIF4                                                                ------->PIF4                                                                <-------MYC3                                                               --------->ANAC58                                                               --------->ANAC58                                                               --------->TGA1a                                                               <---------TGA1a                                                               <---------ANAC55(2)                                                               --------->ANAC55(2)                                                             <------------OsbHLH66                                                           --------->ANAC58                                                       --------->ANAC46                                                       --------->ANAC58                                                      ------->MYC3        <---------ANAC58                     <---------KAN4(2)                <-------MYC2    <---------ANAC58                    --------->YAB1        ===============================bZIP_DOF             <---------ICU4               ---------->DOF2  --------->ANAC58            --------->AHL20(2)         --------->ANAC58--------->ANAC58   <---------AtLEC2            <---------ATHB51           --------->ANAC58--------->AtLEC2   <---------ANAC58            --------->ICU4           ====================================bZIP_DOF                 ---        <---------AHL20(2)   ============================================bZIP_DOF            --------        --------->AHL20(2)   ---------->DOF2          ------->MYC2    <---------ANAC58       -------- ---ARR14(2)<---------AHL20(2)--------->DAG2       <---------ALFIN1 <---------YAB1           -------- ------AHL20(2)   <---------TOE2(3)  ---------->DOF2  <-------MYC3  --------->ICU4    <---------GLK1(2)   ttttttttgtttaaataattaagaataaacaaaaagagagaaagcaaagagacacacatgcaagcacgtgatgagtgcatgtctcgcagagtctcacgcc  1439900                                                         ------>ZmHOX2a(1)                                                      ---------->ID1                               ------>ZmHOX2a(1)  <----------DOF2 ------->TEIL           --------->WRKY38(1)       <---------DAG2 ------>AtLEC2          --------->WRKY12         <---------DAG2                                     - ->ANAC58              <---------MYB52(1)     <-----------GT1                                       < ->ANAC46              --------->DOF5.7(2)  <----------DOF2             --------->AHL20(2)     <----- ->ANAC58 --------->YAB1--------->WRKY45   --------------->AtSPL8       <---------ATHB51 <---------TOE2(3)   atgcacatttcatcatatcaacttcgttgactccttctcagtatgtctttacctttttcctcttatcaattcaaattattcaatacatgttgatgtttta  1440000                                                                                 <------------CBF                                                   <------MYB83                <XXXXXXXXXXXXXXXXXXXXMIR171B/C                                       <---------ALFIN1                        <---------AHL20(2)            --------->YAB1          --------->PCF2 <------MYB46(1)         ----------->GT1           --------->ICU4        ---------->DOF2   ----------->GT1         --------->YAB1         <----------DOF2        <---------ATHB12<------------CBF         <------------CBF -------->AHL20(2)         <-----------------AGL1<---------WOX13(1)    <---------YAB1 ---------AHL20(2)        --------->At4g35610  --------->ATHB12       ------------>CBF ----AHL20(2)         <-----------GT1 ----------------->AGL3         <-----------GT1   atttaaatgggctataatgaagtttatcagcccaataaggcccacttatagattggtttattttttaaaatttacaattgttatattggcccgttttaag  1440100                                                                           <----------DOF2                                                                           <---------ANAC58                                                                           <---------DAG2                                                                           <---------ANAC58                                                                       ------->MYC3                                                                       ------->MYC2                                                                       <-------MYC2                                                                       ------->PIF4                                                                       ------->PIF5                                                                       <-------PIF5                                                                       <-------PIF4                                                                       <-------MYC3                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                      <------NtERF2                                                                      --------->ATERF1(1)                                                                     ------>NtERF2                                                                    <---------ANAC58                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                   <------NtERF2                              --------->ARR14(2)                 <---------DEAR3(1)                   --------->ANAC58                              --------->ALFIN1           --------->bZIP60(1)<---------ARR11(3)                <---------ANAC58                   <-           <---------bZIP60(1)--------->GLK1(2)          <---------At4g35610                       --      <---------ICU4  --------->GLK1(1)       *TSS<---------ANAC46<---------ATERF1(1)         -------    <---------TOE2(3) <---------GLK1(1)   <-----------RAV1(1)   <---------ANAC58              <------   --------->YAB1  --------->ANAC58 ---------->DOF2      --------->At4g35610  --------->ARR14(2)  <--   cccattaagaatcacatcatcaagaaatccaaaatctgaaaagtatgtggctatgtggaagcagaggctggcgcgtgccttatctgcttctctctctcca  1440200                                                  --------->DAG2                                    ------>ZmHOX2a(1)                          <---------TGA1a        ---------->DOF2                          <---------O2      ----------->RAV1(1)                          --------->O2     --------->ANAC46                                   -------      <---------CCA1(2)   ==================================bZIP_DOF         --------->ARR14(2)  ---- --------ZAT18            --------->TGA1a--------->ANAC46                    <---------ARR14(2) ----- ------->ZAT14          <---------ALFIN1 <---------ALFIN1                 <---------ANAC58    <------ -->ZAT14             ========================HOX2a_HOX2a                 <---------ANAC58<----------DOF2 ---ZAT14             =====================HOX2a_HOX2a               <----------DOF2 ---------->DOF2 -------AtMYB61       ------>ZmHOX2a(2)------>ZmHOX2a(1)     --------->AtMYB61  <---------RAP2.6(2)   gtggtctcaaatctctctgtgtgatcccacttgtcatcctcctccacaacataaagcttgagaccataaccctttagcgttttcggctaaagctttcgct  1440300                          <----------DOF2                   ------>ZmHOX2a(1)                <------NtERF2              <---------RAP2.6(2)                        --------->TOE1(2)     --------->REM1(1) <<<<<<<<<NAM          <-------TEIL<---------SPL7 -->At4g35610 <---------ANAC58           <---------TOE2(2)                                 <------ZmHOX2a(1) -->NtERF2    <---------ANAC58           <---------TOE1(2)                          <---------ANAC46 ---->WRKY38(1)<---------SPL7           <-----------RAV1(2)      ----------->GT1  --------------->AGL15 ---At4g35610 <---------ANAC46 ----------->RAV1(2)      ------>ZmHOX2a(2)     --------->GLK1(1)   gactactacaacaatggcgtcctcatccctttcccctgctactcaggttcactcttgatcgttcgaatcgaaacaatcgggtctcttcgtataggaattt  1440400                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                               <---------ANAC58                                                                             <---------MYB46(3)                                                                            <--------P                                                                           <---------ANAC58                                                                           <-------GAMYB                                                                           <---------ANAC58                                                                           <---------ANAC46                                                                          <------MYB83                                          >>>>>>>ZML2                     <------MYB46(1)                                          --------->HSFB2a(2)           --------->ALFIN1                                     <------MYB46(1)                  <---------TGA1a                                     <------MYB83                     ===============MYC_MYB                                 --------->ZAT2                       =============MYC_MYB                                 <---------ZAT2                       <---------O2                                 --------->At4g35610                  --------->O2                                 <---------At4g35610              <-----------HVH21                                 <------NtERF2        ==========================bZIP_DOF             <------MYB46(1)  <------NtERF2           <----------DOF2 --------->TGA1a --------->ANAC58             <------MYB83<---------AtMYB61<---------HSFB2a(2)    <---------bZIP60(1)  --------->ANAC58            --------->MYB59   --------->ATERF1(1)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->MYB52(1)   gggtttttgaaagtttggtttttttttttggtggcagcttggttctagcagaagtgctttgatggcgatgtcaagtgggttgtttgtgaagccaacgaag  1440500                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                                  <---------ARR11(3)                                                                                  --------->ARR11(1)                                                                               --------->HSFB2a(2)                                                                               <---------------AGL15                                                                               <---------HSFB2a(2)                                                                               --------------->AGL15                                                                              <-----------------AGL3                                                                              ----------------->AGL3                                                                              <-----------------AGL2                                                                              ----------------->AGL2                                                                              ----------------->AGL1                                                                              <-----------------AGL1                                                                              <-----------------AG                                                                  <---------ZAT2  --------->ARR11(3)                                                                  --------->ZAT2--------->LBD16                                                       <---------ANAC46    --------->GLK1(1)                                              <-----------HVH21   --------->At4g35610          <-----           ----------->GT1                 <---------ANAC58       <---------At4g35610    ---------->DOF2   --------->YAB1         --------->ATHB12 <---------ANAC58     <---------HSFB2a(2)--------->CCA1(2) ------->TEIL     ---------->DOF2        --------->ARR11(3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   atgaatcatcaaatggttagaaaagagaagattggattgagaatttcttgtcaagcgtcgagtattccagcagacagagttccagatatggaaaagagga  1440600  Previous    Next  AGI:  At4g03280.1    Description:  PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C). Identical to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (petC) [Arabidopsis Thaliana] (GB:Q9ZR03;GB:Q94EI4;GB:Q9FYB6); similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13430.1); similar to Cytochrome b6-f complex iron-sulfur subunit 2, chloroplast precursor (Rieske iron-sulfur protein 2) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 2) (ISP 2) (RISP 2) (GB:Q02585); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains Range:  from: 1440146    to: 1441863    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version