Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------At4g35610                                                                   <---------ZAT2                                                                   --------->ZAT2                                                         <<<<<<<<<TAC1              --------->ANAC58                           <------------AtMYB77              <---------At4g35610              --------->ANAC46                          ------>MYB83                       --------->At4g35610              --------->ANAC58                          ------>MYB46(1)         --------->YAB1         <-----------ARR10                             --------->MYB52(1)      <---------At4g35610   --------->MYB46(3)                                --------->MYB46(3)        --------->At4g35610 -------->MYB46(3)                                  ------->TEIL   --------->At4g35610--------->YAB1< -->GLK1(2)------>ZmHOX2a(2)             <---------AtMYB61------->GAMYB      --------->REM1(1)      <   caacaactactgatctaagcaagtgtaatggagaccagaagttttggtgggatgaaccaactgtctctgagcttagccttcatcagaatcatcagcttat  1417100                         --------->YAB1                 <---------MYB52(1)             --------->YAB1--------->ICU4             ------>ZmHOX2a(1)            <-----------HVH21            <---------ATHB12<---------ICU4          <---------ANAC58         <XXXXXXXXXXXXXXXXXXXXMIR419       <---------At4g35610 <---------YAB1           <---------ANAC46<---------ANAC58 ---------ANAC58        <---------YAB1              <---------ANAC58<---------ANAC58 ---------ANAC58 <---------YAB1               <---------TOE1(2)------>ZmHOX2a(1)   <-----------TGA1   ttgggttcgagctaatcatatgatttatgattattgttttgatgctactaggtttcctgttactcctcttgagtgccaacatcatcgtcatttgtagttt  1417200                                         <---------ARR14(2)                                         --------->ARR14(2)                                       ----------->GT1                         --------->WOX13(1)                                       <---------MYB46(3)                  --------->YAB1                                     ------->MYC3                         <---------AHL20(2)                       <------ZmHOX2a(2)<-------GAMYB        <----------DOF2 ------------>CBF               <---------AHL20(2)    <-------MYC3   <---------YAB1    --------->AHL20(2)              --------->YAB1       <-------MYC3   --------->YAB1 <---------TOE2(3)           --------->YAB1          ------->MYC3<----------DOF2<---------AHL20(2)       <------------CBF   agagattagtcaagaataaaaatggatcaagagaacacatgtggttactctttgatgattctgttttaatgtataaataatcaatcttctattgattttg  1417300                                                                     <---------DOF5.7(2)                                                                   <---------MYB52(1)                                                                   --------->DOF5.7(2)                                                                  --------->TOE2(3)                                                                  --------->TOE1(3)                                --------->ANAC46         ------->GAMYB                        <------                           <---------ARR14(2)            <---------ZAT18                     <-------                           --------->ARR14(2)           --------->ANAC58                    ---------                     <-----------GT1                    --------->ANAC58        <---------TOE1(3)                <---------ARR14(2)       <---------TOE2(3) ------->TEIL         <---------TOE2(3)                --------->ARR14(2)    <---------AHL20(2)--------->ANAC46   <----------DOF2 <---------YAB1   gtgaagtttttaagttcggattttaactgaatatgcgaaatttatggaaacaaactcaacgcacttatcgttaatgacttttaagggtttgttttgattg  1417400                                                                                         --------->ANAC58                                                                                  ----------->GT1                                                                                <------ZmHOX2a(2)                                                                                --------->CCA1(2)                                                                               <---------ARR14(3)                                                                               --------->ARR11(3)                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                 ------------>CBF------>ZmHOX2a(2)                      --------->TOE1(3)                         <<<<<<<<<<<<<<<<<LFY----------->HVH21                      --------->TOE2(3)                         <-----------GT1--------->AGP1                    ------->TEIL                            <----------DOF2    <---------ARR11(3)               <-----------GT1                          --------->ARR11(3)     --------->ARR14(3) ---WOX13(1)<---------ICU4                              <---------ARR11(3)     <---------AGP1     >>> -----CBF--------->TOE2(3)           ----------->GT1  <---------YAB1         ----------->ARR10 >>>>>> >ATHB12 --------->TOE1(3) <------ZmHOX2a(1)          <---------TOE2(3) <----------ID1   --------->ANAC58   aatgtttcaaaccctaattacgaaccttaggaaacaaaatagcaaaaaactcgattaagatacttttaacaatggagacaagatctgtgaaacggaagaa  1417500                                                           <---------GLK1(2)                                                      ------>MYB83                                                      ------>MYB46(1)                                                    ------->GAMYB                                                    --------->AtMYB61        --------->GLK1(2)                                                   --------->MYB46(3)       --------->ARR14(2)    ---------->DOF2           --------->YAB1      -------->P                <---------ARR14(2)     -- >>>>>>>>>TBF1 --------->ANAC58                <---------At4g35610          <---------GLK1(2)------>ZmHOX2a(1) >>>>>>TBF1    --------->ANAC58                --------->At4g35610    --------->YAB1    <---------ANAC58 >>>TBF1   >>>>>>>>>TBF1     <---------YAB1   --------->ANAC46       <---------ATHB12   <---------ANAC58   gaagaagaaagaagaagaagcaaattggtttatcagagtagatagaatcagcaacctccctgattctctaaatcatcagattcttctcttgcttcctctt  1417600                 <---------ANAC58                --------->At4g35610                <---------At4g35610          <----------DOF2            --------->ZAT2              ------>ZmHOX2a(2)            <---------STY1(2)          <------ZmHOX2a(2)            --------->STY1(2)          --------->GLK1(1)                                            -           --------->ANAC46            <---------GLK1(1)               <-----------GT1        <------           --------->ANAC58           <---------ARR14(3)          --------->ATHB12            -------           --------->ANAC58           --------->ARR11(3)       ------>ZmHOX2a(2)              -------      <---------At4g35610             <---------ARR11(3)     <---------ARR11(3)        ------>ZmHOX2a(2)      --------->At4g35610             <---------ARR14(2)     --------->ARR11(3)       <------ZmHOX2a(2)     ----------->RAV1(1)              --------->ARR14(2) <---------ANAC58            --------->ARR11(3)   --------->At4g35610<----------DOF2--------->GLK1(1)   ----------->RAV1(2)         <---------ARR11(3) ------->ARR14(2)<---------ANAC58    <---------GLK1(1)   <---------ANAC58           ------->GAMYB ---   aaatctgcagcacaagctagcttactttcgaaacgatggagatctctctttctctcattgcctgatcttgatttcacctccatcaacgatctcaagaatc  1417700                                                                       <------ZmHOX2a(2)         <--- <---------ARR11(3)                                                   --------->ARR11(3)     <------- --------->ARR11(3)                                              --------->YAB1             <-------- -------->GLK1(1)                                                --------->TOE2(3)          <-------- ---ARR14(2)                     <----------DOF2                <<<<<<<<<ARR2              --------->ANAC46 -->GLK1(2)                     <---------ANAC58             --------->MYB46(3)      <---------ANAC58 -->ARR14(2)                    <---------ANAC58           ----------->RAV1(1)       <---------ANAC58 ------>LBD16             ---------->DOF2         <---------ICU4<<<<<<<<<ARR1 -----------------------   cgaaatctttctcttctaactccatttacaaagtgctttctcttcgtagtcatcgtgactccaacaatcttagatcacttcgttttcgcgttcccgtcac  1417800                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                  <---------AGP1                                                  <---------ARR14(2)                                                  --------->ARR11(3)                                                  <---------ARR14(3)                                                  --------->ARR14(3) -------DOF2                <---------At4g35610   <-----------ARR10 --MYB52(1)       --------->ATHB12                <---------ARR11(3) ---TGA1       <---------ANAC58                   --------->ARR14(2)                 <-----------GT1 ---HVH21      <---------ANAC58              <-------TEIL                         <----------DOF2<--- >TaNAC69(2)   --------->TOE2(3)<---------MYB52(1)--------->AGP1                  --------->TOE2(3)   tttcacaagtctcaattccttgattcgtttagctgttactcatcaggttcaagatcttgacattgaagtcactaccaaagactactttaacttccctcgt  1417900                                                                                  ------->PIF5                                                                                  <-------PIF5                                                                              --------->At4g35610                                                     <<<<<<<<<MYB2          <---------ICU4   --------                                                --------->TOE2(3)          --------->At4g35610 ------                                              ------>MYB46(1)            --------->YAB1      <-------                                           --------->MYB46(3)            <---------ICU4  --------->GLK1(1)                            ----------->HVH21 -------->P              --------->REM1(1) <---------HSFC1(2)     <-----------GT1        ----------->TGA1  ------>MYB83            --------->YAB1    --------->HSFC1(2) ------TOE1(2)    --------->AHL20(2)      --------->At4g35610       ------>ZmHOX2a(1)<------ZmHOX2a(1)   tggattgtgacctctcaaaatttaagagctctgacgcttaaatcagccaaccttggttttcgattacctccttcatcatcagcacgaggaggtttccaaa  1418000  Previous    Next  AGI:  At4g03210.1    Description:  XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9); hydrolase, acting on glycosyl bonds. Identical to Xyloglucan endotransglucosylase/hydrolase protein 9 precursor (XTH9) [Arabidopsis Thaliana] (GB:Q8LDW9;GB:Q9ZR10); similar to EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G13870.1); similar to xyloglucan endotransglycosylase/hydrolase [Brassica rapa] (GB:AAV92081.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); contains InterPro domain Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455); contains InterPro domain Xyloglu Range:  from: 1415949    to: 1417327    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g03220.1    Description:  F-box family protein. Identical to Putative F-box/FBD/LRR-repeat protein At4g03220 [Arabidopsis Thaliana] (GB:Q9ZR09); similar to F-box family protein (FBL13) [Arabidopsis thaliana] (TAIR:AT5G53840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24212.1); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 1417472    to: 1419148    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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