Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->YAB1                                                                                      --------->ICU4                                                                                     <---------TOE1(2)                                                                             ------>ZmHOX2a(2)                                                                            --------->GLK1(1)                                                                            <------ZmHOX2a(2)                                                                            <---------GLK1(1)                                                                           --------->ARR14(2)                                                                           <---------AGP1                                                                           --------->ARR11(3)                                                                           <-----------ARR10                                                                           <---------ARR14(2)                                                                          <---------ARR14(1)                                                                          <---------CCA1(2)                                                                        ------>ZmHOX2a(2)                 <----------DOF2          --------->At4g35610          <------ZmHOX2a(2)             <------MYB83         --------->REM1(1)                   <---------ARR14(2) <---------YAB1            --------->MYB59   --------->At4g35610                     --------->ARR14(2) --------->ICU4 ---->TOE2(3)<------MYB46(1)  <---------At4g35610             <---------ALFIN1  <-----------HVH21   tcaaattcaacaatttggtctttttcagtttcagcttcaacatcagacgactctgtttcttcacacacttccgatcggatctcgtcgcatgatgatgagt  1395200                                                     ---------->DOF2                                                  ------>NtERF2                                                 --------->ANAC46                                             <---------At4g35610                                             ----------->RAV1(2)                   --------->ANAC58                                         <---------YAB1              ----------->GT1          --------->ARR14(2)          <------ZmHOX2a(2)         ----------->HVH21  --------->ANAC58          <---------ARR14(2)         --------->ARR11(3)       <---------ANAC46  ------>ZmHOX2a(1)    <---------SPL7                   <---------ARR11(3)---------->DOF2   <---------YAB1           <--   tatggctgtccgaattcagagaagaggttttgatcaagagatcatgcttctgcgccaaagagcgatgtgaacggtataattcctcgagcaattcaatgag  1395300                 <---------AHL20(2)               --------->REM1(1)           --------->ANAC55(2)                  ------>ZmHOX2a(1)               --------->GLK1(1)      --------->KAN4(2)                  <---------GLK1(2)             --------->ANAC58   <---------ANAC46       <---------ANAC58 <---------HSFB2a(1)         --------->ANAC58   <---------ANAC58       <---------ANAC58 --------->HSFB2a(1)       --------->YAB1   <---------ANAC58  <---------ICU4   --------->ANAC58              <---------ATHB12       <---------  ---------->ID1 --------->AHL20(2)   --------->ANAC58            --------->WOX13(1) <----------DOF2 --------DOF2   --------->ICU4        <---------TOE2(3)     --------->TOE2(3)   <---------GLK1(1)   ctttggcttattctcgtaattaatctttgctcgtttcatcaaggaatctccttcatcttcaacctcatcaatcacgctcagcatttcctttgtctttgaa  1395400                             ------>MYB83                             ------>MYB46(1)                           ------->GAMYB                           <---------MYB59                         --------->ANAC58                        ------->GAMYB                       <---------MYB111(2)                       <---------MYB55(2)                       --------->MYB46(3)                         ----------->GT1                    --------->REM1(1)                   <---------ZAT6              <---------TOE2(3)                        <---------TOE1(3)                           --            <---------AHL20(2)                         <---------TOE2(3)  ----------->GT1         --- -DOF2 <---------MYB52(1)--------->ANAC58   <----------DOF2   --------->ARR11(3)                 <---   tcaagctctgttattttatgttacaacaaccaaattagtaagagagcttttgcgattagggttagaacttgaaaaaacgtagaaagataagtttttgagt  1395500                                                              <---------ALFIN1                                                        ------>MYB46(1)                                                        ------>MYB83                                                        --------->ARR14(2)                                                      --------->MYB46(3)                                                      --------->AtMYB61                 --------->ANAC58           <---------YAB1    --------->AtMYB61                 --------->ANAC58         <---------ANAC46   --------->MYB46(3)  <---------MYB55(2) --------------->AGL1                     ----------->GT1  --------->ANAC46      --------->MYB46(3) ----->P<---------ZAT14                --------->ALFIN1--------->WOX13(1)       --------->ANAC58 --------GT1<---------ZAT6   <------ZmHOX2a(1)        <---------ALFIN1          --------->ANAC58   taccagagagagtagagttaagccaaggcgaggaatttgatgtgttgtgatttgcaccaatccaccaccattttgatgtctcacccatcgtcttcacttg  1395600                                                                         ------>ZmHOX2a(1)                                                                  ------------>CBF                                                                 ------->TEIL                                                              <---------ANAC55(1)                                                              <---------O2                                                              <---------ANAC58                                                              <---------ANAC46                        <-----------GT1                       --------->ANAC55(2)                  --------->ARR11(3)                          <---------ANAC55(2)                  <---------GLK1(2)                           <---------bZIP60(2)          ------>MYB46(1)          <---------ICU4             <---------ANAC58          ------>MYB83  >>>>>>>>>WRKY18                      ----------->STF1        <---------MYB111(2)        <---------AHL20(2)       <---------TGA2(2)       <----------DOF2<-        <---------MYB111(1)    --------->AHL20(2)          ----------->TGA1    <-----------------AGL1        <---------MYB46(2)     <---------AHL20(2)          ----------->HVH21   <-----------GT1   ----        <---------MYB59----------->HVH21          --------->GLK1(1) --------->WOX13(1)  ---------->ID1      ------->TEIL<---------ARR11(3)  --------->AtLEC2    <-----------HVH21<----------DOF2       <---   taattttgcacctacttcaagatttttgacagtttaattaatgcaaatagagatttcaagggtgacgtatcaatcctcttttctctctttggcctctctc  1395700                 <---------ANAC58                 <---------ANAC46                 <---------ANAC58         ---------->DOF2                                                  --------->ZAT6    ----------->GT1                      --------->MYB52(2)             --------->YAB1      <--------   <---------TOE2(3)                   <--------P                      <---------YAB1      <---------AHL20(2)   <---------TOE1(3)                   <---------MYB52(1)   ------>ZmHOX2a(1)              --------->AHL20(2) ---------DOF2--------->ALFIN1       <---------MYB46(3)    --------->TOE2(3)         --------->YAB1 ----------->AGL15                <------------CBF---------->DOF2   <---------AHL20(2)     <--------- ------------AGL15 --------->ALFIN1<---------MYB52(1)      --------->TOE1(3)        <---------YAB1   tctttatggtttaaaggtggtgtgttagagcatgtccattggttagtttcttaaaaggaatccttaacattttataatactaaattttgataattttata  1395800                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                           --------->YAB1                                                                                 <---------YAB1<-----                                                                                --------->ARR11(3)                                                                                <---------ARR11(3)                                                                                <---------AHL20(1)    <------------CBF                                                            --------->AHL20(1)    >>>>>>>>>ARR1                                                             --------->ARR11(3)    >>>>>>>>>ARR1                                  --------->AHL20(2)         <---------ARR11(3)    >>>>>>>>>ARR2                             --------->GLK1(2)               <---------AHL20(1)    >>>>>>>>>ARR2                       ----------->GT1                       --------->AHL20(1)<----   <------ZmHOX2a(1)               ------------>CBF<---------AHL20(2)      --------->AHL20(2)--------  <---------YAB1 <---------ICU4   <<<<<<<<<<<<<<<<<LFY                     <---------AHL20(2)<------- <---------TOE2(3) ------>ZmHOX2a(1)   <---------ATHB12                 --------->AHL20(2)<---------YAB1 -AHL20(2)     ------->TEIL  <-----------GT1 <---------GLK1(2)         --------->AHL20(2) <---------AHL20(2) --TBP<---------MYB46(3)     <---------AHL20(2)  <----------DOF2     --------->YAB1       --------->AHL20(2)   gtttaggattgttgatgaatccttacagtttttaatgtccaatggtagaatctttaaatgagtttttttaaaaataaaaaaatatttttgatataattat  1395900                  <---------ICU4                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --->AHL20(1)    --------->ICU4                           <----------DOF2          <---------ICU4 --->AHL20(2)  <--------ATHB1                    --------->RAP2.6(2)             --------->ARR11(3) ----AHL20(2)  -------->HAHB4         ---------->DOF2---------->DOF2             <---------ARR11(3) ---ICU4       --------->YAB1       <---------YAB1--------->At4g35610        --------->At5g28300 -->YAB1       <---------ICU4  <---------ICU4  <---------At4g35610          ----------->GT1 ----AHL20(1) <---------ATHB51--------->ICU4   --------->At4g35610       <---------ANAC46 -----YAB1    --------->ICU4--------->YAB1     <---------ZAT2            <---------bZIP60(2) ->ICU4  --------->TOE2(3) --------->AHL20(2)  --------->ZAT2       <---------At4g35610 --YAB1<-----------GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------At4g35610           ------   aatttgatataacttaataattcttacaaataaaaattatcaaagcttcagcagccaaagctttttttgctgatgatgtggtaaatctttgctaaaacag  1396000                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                        <---------ANAC46                        <---------ANAC58                        <---------ANAC58                     <---------RAP2.6(2)                   <---------MYB46(3)                  <---------AtMYB61                                                      ------>ZmHOX2a(1)             <<<<<<<<<<<<<<<<<LFY                                                       --------->TOE2(3)            --------->ETT(2)                   ---------->DOF2             --------->At4g35610           --------->HSFB2a(2)               --------->ANAC58             <-----------ARR10        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC58             --------->GLK1(2)        xxxxxxxxxxxxxxxx>smallRNA(s)         --------->ANAC46             <---------ARR14(2)---------       <----------DOF2 <------NtERF2  <---------HSFC1(2)                  --------->ARR14(2)<-------- ----->GT1 <---------HSFB2a(2)        --------->HSFC1(2) <----------DOF2 <---------GLK1(2)  ---------   tttaaaatgctttctcgacattggtggcttcaagagcagatgtttccaagaaagagagactttctgtcttagctagaatctgaccatcttcctcagctat  1396100  Previous    Next  AGI:  At4g03153.1    Description:  kinase interacting family protein. similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03470.2); similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22418.1); contains InterPro domain KIP1-like (InterPro:IPR011684) Range:  from: 1394845    to: 1395588    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g03156.1    Description:  small GTPase-related. similar to AtRABA2d (Arabidopsis Rab GTPase homolog A2d), GTP binding [Arabidopsis thaliana] (TAIR:AT5G59150.1); contains InterPro domain Ras (InterPro:IPR013753) Range:  from: 1396002    to: 1396784    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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