Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                -----                                                                                          --------->MYB46(3)                                                                                         --------->At4g35610                                                --------->At4g35610                  --------->ARR14(2)                                               --------->ANAC58             --------------->AtSPL8                                               --------->ANAC58             --------------->AtSPL3                                           --------->YAB1                 <-----------ARR10   <------                                        ------>ZmHOX2a(1)                 --------->ARR14(2)  -------                                        =======================HOX2a_HOX2a--------->GLK1(2)  --------                                        <---------------AGL15             <---------ARR11(1)---------                <---------ICU4        ------>ZmHOX2a(2)                   <---------ARR14(2)---------              --------->ANAC58       <------ZmHOX2a(2)                    ------->TEIL  --------->ANAC46              --------->ANAC58      <---------ARR14(2)                <---------At4g35610<---------At4g35610 ----------------------->TaNAC69(2) --------->ARR14(2)  <------ZmHOX2a(2)<---------ARR14(1) -------->P   agtatttaagctatgtaagcatttctaaacaaattttggatcctctaataagctacagatcgatgaaattgcagcgaatctgtaccatatcagcaaccaa  1321100 ->MYB83 ->MYB46(1)                               <---------ZAT6 ---MYB59                          ------>MYB83                  <---------At4g35610             ---- >GAMYB                            ------>MYB46(1)     --------->YAB1           ----------->RAV1(2) ->MYB46(3)                      --------->TOE2(3)    <---------ATHB12          <---------At4g35610 >ANAC58                         <---------MYB59    --------->WOX13(1)   --------->MYB59      <------ZmHOX2a(1) >ANAC58            <---------ALFIN1      ----------->GT1        --------->At4g35610     -------->P   attcactatgaagcattctgaaacacctccataaacctaatttagagttaaaatcaatcacaagttcagcacattttggtccatctgattctaccaggac  1321200                            --------->GLK1(2)                           <---------GLK1(2)                      --------->TOE2(3)                    <---------ARR11(3)             --------->MYB52(1)           <---------MYB52(2)          <---------At4g35610                                                                     <--          --------->ZAT2 ----------->ARR10     >>>>>>>>>GATA-1        --------->YAB1  <-------TEIL<--          --------->At4g35610     --------->ZAT6             --------->ARR14(2)      --------->CCA1(2) ----->TOE1(2)      --------->ARR11(3)   <-------TEIL       <---------GLK1(1) <-----------GT1     <--   atacgatttcacagctaactaagaccttagattctatcactgatacatagataaacaagatgaaatctgcattcacaatataactagatacaatctaatg  1321300                                    ----------->HVH21                                    <----------ID1                                --------->ATHB12  --------->HSFB2a(2)                       ---------                            --------->ATHB12      ------>ZmHOX2a(1)                     --------->ANAC58                          ----------->RAV1(1)     <---------HSFB2a(2)                   --------->ANAC58                          ------->TEIL       --------->GLK1(1)                          <---------ANAC46 -------ANAC58           --------->ANAC46    <---------GLK1(1)                       ----------->HVH21 -------ANAC46         --------->ANAC58      --------->At4g35610               ---------->DOF2 -------ANAC58         --------->ANAC58      <---------At4g35610  <-----------------------TaNAC69(2)-   gcgagtagggatgaaaacaggcgaaacgcaccattgatgggacaaggagctcctagagaagtttcagagaagtagaacagaagaagcgcgacggaaaaga  1321400                                    --------->TOE1(2)                                  <---------------AtSPL8                                  <---------------AtSPL3                                 ---------->DOF2                             ------>MYB83                             ------>MYB46(1)                            ----------->RAV1(1)           --------->At4g35610 ------->GAMYB           --------->HSFC1(2)      <------ZmHOX2a(2)     --------->MYB52(1)         <---------HSFC1(2)     <---------ARR14(2)   --------->MYB46(3)           --------->HSFB2a(1)      <----------DOF2     --------->ARR14(2)   --------->DEAR3(2)           <---------HSFB2a(1)   *TSS ------>NtERF2          --------->ARR14(2)        --------->HSFB2a(2)       ------>ZmHOX2a(1)    ---- ->DOF2------>ZmHOX2a(2)<---------ARR14(2)        <---------HSFB2a(2)    <-----------GT1         <--- -------->DEAR3(1)  --------->At4g35610   <------ZmHOX2a(2)             <-----------GT1     XXXXXXXXX   cgacgacgatcggagatgaagaagcggaaccaacagaaagtacgatcattttctcgatgcttcgacgaactaattttcctctctttagaagtctcagaac  1321500               --------->HSFC1(2)               <---------HSFC1(2)             <---------ARR11(3)                                      --------->YAB1         ---------->DOF2                   <---------AHL20(2)       ----------->TBP      ----------->GT1                     <---------AHL20(1)  --------->ARR14(2)  ---------->DOF2                         --------->AHL20(1)  <---------ARR14(2) ------->GT1 --------->ARR11(3)        <-----------TBP      --------->ANAC46 ------ZAT6  <---------GLK1(2)       <----------DOF2    <-----------GT1 XXXXXXXXXXX>MIR2937            ---------->DOF2       --------->AHL20(2)---------->DOF2       <------   tgttaaaagagtaaagatacttcgaaacagaccccaaagctttatatatttctgaattaaacccgatactataaaaaagagtcagaaaatactatttttc  1321600                                                                                               ------                                                                                               <-----                                         <---------AHL20(2)                                   <------                                        --------->AHL20(2)                                 --------->AHL20(2)                                    --------->AHL20(1)                                     <---------AHL20(2)                                    <---------AHL20(2)                                    <---------AHL20(2)                        ---------->DOF2 <---------AHL20(1)                                --------->AHL20(2)                      --------->CCA1(2) <---------AHL20(2)             <---------YAB1 <---------AHL20(2) -----GT1    <---------ATHB12       --------->AHL20(2)       ---------->DOF2          <---------YAB1   attttcgataatccaatgttgaagataaaaggagggaattaattaattttagaaatattaagagaaagttttgatgatatatagtttttttattaattta  1321700                                                               <------------ATHB5                                                               <--------ATHB1                                                               --------->ATHB51                     <                                                               <---------ICU4                       -                     --------->ANAC55(1)                       --------->YAB1                      <-                     --------->ANAC55(2)                      <---------ATHB51                 ------                     --------->ANAC46                         <---------ATHB12                -------                     <---------ANAC55(2)                      --------->ICU4                 --------                    <-------TEIL                           ----------------->AGL1            --------       ---------->DOF2                  <---------ICU4    <---------ZAT18                    -------- --->AHL20(2)     --------->ARR14(2)   <---------YAB1     --------->ZAT18               <------------ ----AHL20(2)     <---------ARR14(2)   --------->ICU4    ----------->GT1           --------->DAG2  <- ---AHL20(2)   --------->YAB1    <---------TOE2(3)   <---------ZAT14              --------->MYB52(1)<   tatcacatccaaagtaatcatatacgtattggtttaatgtgataatttcagatagtatagggcaataatgggaaatataagaaataagggggagaacgtc  1321800     ----------->GT1 --------ATHB1 -------->ATHB51 --------ATHB12                                            <-----------GT1 ------>CBF                                                *TSS -->TOE2(3)                                           <------ZmHOX2a(1)   ------>ZmHOX2a(1) ->ANAC58                                            ----------->GT1  <---------ALFIN1            <-- ->ANAC58                                    <---------ANAC58       --------->ANAC46              --- --->GT1     <---------ICU4                  <---------ANAC46 --------->TOE2(3)                  <--- ---AtSPL3  <---------ATHB12    ----------->GT1   --------->ICU4 -------->P                      ---- --------ATHB51           ---------->DOF2    <---------ANAC58 --------->TOE1(3)                  <--- ---------ICU4   ------------>CBF     <----------DOF2<----------ID1--------->MYB46(3)           <----   aataattcggataaatcatttcaatggagaaagagagtgactttgttgtgtgatgaggaaaaaaccttacccgctcctctaaaaccctcgtcttctccga  1321900            <---------LBD16          <---------ARR14(2)         <---------At4g35610         --------->At4g35610         --------->ZAT2                                                            <------MYB83         <---------ZAT2                                                           --------->MYB46(2)      ------>ZmHOX2a(1)                                                           --------->MYB59     --------->TOE2(3)          --------->ANAC58                                <---------MYB52(1) -------ARR11(3)                --------->ANAC58                         <---------ANAC58 ------>ARR11(3)            --------->YAB1                               <---------ANAC58 ------GLK1(1)             <---------ATHB12                          <---------ANAC58   <---------TOE1(3) ----->GLK1(1)           --------->WOX13(1)                          <---------ANAC58   <---------TOE2(3) ------CCA1(2)       --------->GLK1(1)       <-----------GT1    <-----------RAV1(1)<------MYB46(1)  < -----MYB52(1)--------->LBD16   --------->ANAC46 ------>ZmHOX2a(1) <---------MYB46(3)   <---------YAB1   tatctttcctcagctccggtgagatttcaatcacacgctggtccaattctccttattccatagtttctgtggtttgcttctagttaggttatggtttttt  1322000  Previous    Next  AGI:  At4g02980.1    Description:  ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1). Identical to Auxin-binding protein 1 precursor (ERABP1) [Arabidopsis Thaliana] (GB:P33487); similar to resistant endoplasmic reticulum auxin-binding protein 1 [Sinapis arvensis] (GB:AAG24497.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Auxin-binding protein; (InterPro:IPR000526); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886) Range:  from: 1319656    to: 1321477    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02990.1    Description:  mitochondrial transcription termination factor family protein / mTERF family protein. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G44020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22461.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 1321859    to: 1324004    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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