Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <----------DOF2                                          <---------At4g35610                       --------->GLK1(2)                    ---------->DOF2   <---------WOX13(1) <---                      <---------GLK1(2)         --------->MYB46(3)     <----------DOF2    --------->DAG2 <---------ARR11(3)   --------->ARR14(2)   --------->ANAC55(2)      ------->TEIL   --------->At4g35610 --ARR11(3)           <---------ARR14(2) <---------ANAC46 --------->ANAC46  --------->ATHB12     <--- ->ARR11(3)      --------->MYB52(1)     <-------TEIL    --------->ANAC46   <---------YAB1---------->DOF2   caatatcaacttaaaaaaaaaacagattctttgacaataagtttcatgtaaccaatatacacaaaagaagtacctttgtgattgcagcagttaaagtggt  1298000                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                              <------                                                                                              <------                                                                               --------->YAB1 -------                                                                              <---------ATHB12-------                                                                            --------->WOX13(1)-------                                                                --------->ANAC55(2)           <------    --------->ICU4                                            --------->AHL20(2)              <------ ------ANAC58              ----------->RAV1(1)    ----------->RAV1(1)--------->At4g35610   <--------- ------ANAC58       <---------ATHB12         <---------At5g28300<---------ANAC55(2)  --------->YAB1   cttgccatgatcaacatgcccaatagttccaacatttacatgaggtttactgccacaagagcaattacataagcagagcaatcacaatcagaatcaccaa  1298100                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                =====                                                                                             ========                                                                                             <------ZmHOX2a(1)                                                                                       <---------HSFB2a(2)                                                                                       --------->HSFB2a(2)                                                                                      <---------LBD16 --->P                                                                              ================HOX2a_HOX2a ->MYB83                                                                            ================= ->MYB46(1)                                                                        --------->GLK1(1) --->MYB55(1)                         <---------------AGL15                        <---------GLK1(1) ---MYB46(2)                         <-----------------AGL3                       <---------AGP1<---- ---MYB55(2)                  ---------->DOF2                                     --------->ARR14(2) -->DEAR3(1)              <----------ID1                                          <---------ARR14(2) -->MYB46(3)      ------>ZmHOX2a(2)------------------------>ANAC81    --------->DAG2================= -->AtMYB61      <------ZmHOX2a(2) --------->ANAC58         <----------DOF2       <---------ARR11(3)- ---MYB111(1)   --------->ARR14(2) --------->ANAC58    <---------MYB52(2)         --------->ARR11(3)< ---MYB111(2)   <---------ARR14(2)------------------------>ANAC81    ---------->DOF2------>ZmHOX2a(2) --GT1    <----------DOF2----------->GT1       ---------->DOF2 <---------ANAC46   ------->TEIL-------   ccagttttccaactttccgatctgaagagggaaaaagaagcaaaaaatggaaagaaaactaactttcgagtaaaagtggccatggatctccagaaggagg  1298200    --------->LBD16 ------>HSFC1(2)                                                           --------->AtMYB61 ------>HSFB2a(1)                                                          <---------ALFIN1 -------HSFB2a(1)             <---------ALFIN1                        --------->ANAC58     ------>ZmHOX2a(2) -------HSFC1(2)          --------->At4g35610                         --------->ANAC58    --------->CCA1(2) =============================HOX2a_HOX2a                          ------->GAMYB          <------ZmHOX2a(2) =============================HOX2a_HOX2a                         --------->ANAC58       --------->ARR11(3) ==HOX2a_HOX2a         <------ZmHOX2a(2)                          --------->ANAC58       --------->AGP1 --ZmHOX2a(1) <------ZmHOX2a(1)                                 --------->MYB52(1)       <---------AGP1 ====================HOX2a_HOX2a                              <---------MYB52(2)         <---------ARR14(2) -------->ARR14(2)    --------->ARR11(3)                   <------ZmHOX2a(1)             <---------ARR11(3) ---------ARR14(2)    <---------ARR11(3)        <------ZmHOX2a(2)>>>>>>>>>MYB98          --------->ARR14(2) -->ALFIN1    ================HOX2a_HOX2a       ==================HOX2a_HOX2a          ----------->ARR10   aggttccgaaggtagaggaagagagatcatctccaccgatagaatgagagatcgagtaagaggaagtaacggaagcaccacagcgagagtagatctggga  1298300                                                        <---------ANAC58                                                  --------->ICU4                                              ------>NtERF2                                             --------->RAP2.6(2)                                             --------->ANAC58                                             --------->ANAC58                                             --------->ANAC46                                            --------->SPL7                                          <---------SPL7<---------ANAC58       --------->ANAC58                     <---------STY1(2)    ------->GAMYB <---------ANAC46       --------->ANAC58                     --------->ZAT2      --------->MYB46(3)                    --------->ANAC46          --------->ANAC46               <---------MYB52(2)           --------->DAG2      --------->CCA1(2)     <----------ID1  <---------ZAT2    --------->MYB52(1)           ---------->DOF2    ----------->ARR10   agagaatggaacaaggcgcttcgagctagggtttcgaagaacaacggacgccattttgacttgtacgagagaaaggcgaacacacaaatgagatttgggg  1298400                                                                        --------->LBD16                                                                      <---------LBD16                                                                    <---------ARR14(2)                                                                  --------->MYB46(3)                                                                  --------->DEAR3(1)                                                                  ----------->HVH21                                                               ----------->HVH21                   --                                                               --------->TOE1(2)                   <-                                                              --------->DEAR3(2)                  <--                                                              ------>ZmHOX2a(2)                   <--                                                             <------ZmHOX2a(2)                    <--      ----------->RAV1(2)                                   --------->ARR14(2)         <-----------GT1      <------NtERF2                  <---------ALFIN1       <---------ARR14(2)   --------------->AGL15    *TSS             <---------GLK1(1)            --------->TOE2(3)------>NtERF2 ====================   ttttagtcgcctgagtaacaagggtttctcttgaaacctcgaccctgttttttcttaaacccgatccgacgacccggcttaagcccattttagtattctt  1298500   <------------CBF                                                         --------------->AtSPL8  --------->ATHB12                                                     <---------PCF2  -------->ATHB1                                                      <---------DEAR3(2)  --------->ATHB51                                                   <---------DEAR3(1) <---------YAB1                                                   <---------ANAC58           <------- ------------->AGL15                       <---------AHL20(1)     <---------ANAC55(1)     --------->AHL20(2) --------------AGL15                       --------->AHL20(1)     <---------ANAC58        <---------AHL20(2) -------YAB1                               <---------AHL20(2)     <---------O2            <---------AHL20(1) ---------------AGL2       -------->P      --------->AHL20(2)     <---------ANAC46<---------DAG2 ---------------AGL3       ------>MYB83   <---------AHL20(2)      --------->ANAC55(2) <---------AHL20(2) ==============MADS_MADS   ------>MYB46(1)--------->AHL20(2)    <-----------GT1   <----------DOF2   actattattgggccttagttcaaaacaccaacttgttcaacaaattaaatttttgtttattcgattttacgtgggctcgaagtactttttattttatttt  1298600                                                             --------->AHL20(2)                                                             --------->YAB1                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                     --------->ARR14(2)        --------->DAG2                               <---------ARR14(2)               <-----------GT1 <---------MYB46(3)  <---------CCA1(2)       <---------AHL20(2)             <---------ANAC55(2)     - ----------->GT1     --------->GLK1(1)       --------->AHL20(2)      --------->AHL20(2) --------->ZAT6 --YAB1---------->DOF2                       --------->AHL20(1)<---------YAB1         --------->MYB52(1)   tgtttgttaaaaagctatcaagtatatccaaagtttttaagagcaaataaaatgggatccaaattataaaaaaaaatcacttaaaaattaacagtataga  1298700                    --------->ZAT6        <----------DOF2        =====================================HOX2a_HOX2a        ------>ZmHOX2a(1)      ------>ZmHOX2a(2)                 <---------YAB1    --------->ARR11(3)                 <-------GAMYB   --------->AHL20(2)    <---------ARR11(3)    ----------->GT1             --------->AHL20(2)<-------TEIL  <---------YAB1  <-----------GT1 <---------YAB1  ------->TEIL <---------AtLEC2                    -- -------->CCA1(2) --------->MYB52(1)  ------>ZmHOX2a(2)<---------AHL20(2)                       <----   tgatatgatccttttaaaattaacagtatagataatatgatcgttatagatgaatatttaattttgcataaatatacatatttttgtcaagaacataaat  1298800                                                                                           ----------                                                                                       ---------->DOF2                                                                                       --------->MYB52(1)                                --------------->AtSPL8                          <---------ANAC58                               --------->RAP2.6(3)                 <---------YAB1   =================                             ----------->HVH21                   <---------At4g35610-----------------                 ----------->GT1--------------->AtSPL3       <-----------HVH21  <---------ANAC58    --------->ARR14(2)       ----------->TGA1               --------->ANAC46    ------->GAMYB    <---------ARR14(2)<-----------GT1                     --------->ANAC55(2) <---------At5g28300   - ------->AtLEC2 <---------TOE2(3)                         <---------ANAC55(2)<-----------GT1--------- -----ATHB12    <---------TOE1(3)                       <-----------GT1<-------TEIL -----------------   catgcatatttgaatttgaaggttaaacaatatgacggtactattacaaactgctatattacatgtcatatgattcatataaccgtgcctaaagggttaa  1298900  Previous    Next  AGI:  At4g02930.1    Description:  elongation factor Tu, putative / EF-Tu, putative. Identical to Elongation factor Tu, mitochondrial precursor (TUFA) [Arabidopsis Thaliana] (GB:Q9ZT91;GB:Q39206); similar to AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b), translation elongation factor [Arabidopsis thaliana] (TAIR:AT4G20360.1); similar to translational elongation factor EF-TuM [Zea mays] (GB:AAG32661.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61809.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22472.1); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Translation elongation factor EF1A/in Range:  from: 1295409    to: 1298404    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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