Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                 --------->ARR11(3)         --------->ARR14(2)                      <---------ARR11(3)        <---------GLK1(1)                        --------->ARR14(2)     <---------YAB1                              <-----------ARR10   <---------ICU4                                <---------AGP1                        --------->ANAC58  <---------YAB1                            =============HOX2a_HOX2a           ----------->GT1  --------->ICU4                            <------ZmHOX2a(1)       --------->ANAC58   --------->ANAC58 -------->YAB1               <---------AHL20(2)  --------->AGP1 --------->ANAC58     ---------->DOF2 ---------ICU4              --------->AHL20(2)   <---------ARR14(2) --------->ANAC58<---------ARR14(2) ------->ICU4     <----------DOF2           ==============HOX2a_HOX2a         --------->DAG2 --------ATHB12 <---------ZAT2          ---------->DOF2<---------ATHB12   --------->YAB1  ------->TEIL ---AtSPL8      --------->At4g35610   <---------At4g35610       --------->ANAC58    --------->ARR14(2) -->AtSPL8      <---------At4g35610   --------->At4g35610   --------->ALFIN1 ---------->DOF2---------   aatcattatgaaatctgcagctttgcaaaattttatattcagcaaaggacagatctaatcaagtggaagcaagcactcataaagcaaaaacgcacttatt  1268200                                                                           ----------->GT1                                   <---------YAB1                 <---------ANAC58                             <---------YAB1                       <---------ANAC58                 <-                           <---------ICU4               <-----------RAV1(1)<---------MYB46(3)      <-                    --------->KAN4(2)        ------->MYC3      <---------CCA1(2)                 <--- >ICU4 <---------ARR14(2) <---------MYB52(1) <-------MYC3    <---------AtLEC2                --------   gacaaaacaaatatggtatgtttattccattattcttatgctaagcatgtgatgaattgtgttgcatagcttactagtcgttaaaaatcaaacaaaaatt  1268300                                                             <------MYB83                                                             <------MYB46(1)                                                            --------->MYB46(2)                                                            --------->MYB59               --------->ANAC55(1)                                                            --------->MYB111(2)           --------->ANAC58                                                            --------->MYB111(1)           -----------                                                           <--------P                     --------->ANAC58                                                           <---------MYB55(1)             --------->ANAC55(2)                                                         <------MYB46(1)                  <---------ANAC55(2)                                                         <------MYB83                   <-----------RAV1(2)                                                        --------->MYB111(1)           <------ZmHOX2a(1)                                                        --------->MYB59           ---------->DOF2                                                      --------->ARR14(1)      <---------------AGL15                             --------->MYB52(1)       --------->CCA1(2)       --------------->AGL15                --------->ANAC58                     <---------ARR14(2)      ----------------->AGL1                --------->ANAC58                     --------->ARR14(2)      ----------------->AGL3              --------->ZAT6 <-----------GT1         --------->ARR11(3)      ----------------->AGL2        --------->DAG2    <---------ICU4             <---------ARR11(3)      <-----------------AGL1 -------P<---------------AtSPL8    <---------WOX13(1)--------->ARR11(1)      ======================== --------MYB52(1)         --------->YAB1            <---------HSFB2a(1)  --------->ARR11(3)       <-- ------MYB46(3) --------->ANAC46 --------->ATHB12  ----------->ARR10     <---------ARR11(3)    ------ ->DAG2---------->DOF2   <---------ATHB51    --------->TOE1(2)     --------->TOE2(3) <----------ID1   ggttagtcaaaaaggaacactcaaacaataataactgattgatagtacatgggaagatttggtaggtattcttaaaatctccaaaaaaggacaggtaaca  1268400                  --------->YAB1      --------->HSFB2a(1)      --------->HSFC1(2)      <---------HSFB2a(1)      --------->At4g35610      <---------HSFC1(2)           <---------------AtSPL8 <---------------------WRI1    ---------->DOF2 <---------HSFB2a(2)         <---------HSFB2a(2) --------->HSFB2a(2) <-----------GT1 >GT1 <---------At4g35610    --------->HSFB2a(2)---------->DOF2                    <---------ANAC58 ============================================MADS_MADS                             <---------ANAC46 --------DOF2  --------->YAB1--------------->AGL15               ----------->GT1   <---------ANAC58 --->ZAT6     ----------->GT1<---------------AGL15     ---------->DOF2<---------YAB1              ---   ctttgggaagcttacaaggataataacatttctaaaagaagtactcagagcaaagtagaaaggaaggaagttatactagtacattgcgagaaacaaaaac  1268500                                          <---------TOE2(2)                                          <---------TOE1(2)                               <---------------AtSPL3                                               -           >>>>>>>>>TBF1 <---------At5g28300                            ------>ZmHOX2a(1)          <-   <----------ID1       --------->YAB1<---------ZAT14                  <---------ALFIN1            -- ------->DOF2  <---------KAN4(2)      --------->ZAT14    <---------AtLEC2        ------>ZmHOX2a(1)<--   caaagaagacgaagaagaatatacaattaccatgaagtacttcacaggtttcttcacgagcatggccatagctcctcttcttcctattgaaatctactta  1268600                                                                                            <--------P                                                                                          <------MYB46(1)                                                                                          <------MYB83                                      <---------GLK1(2)                                  --------->MYB59                                 --------->YAB1                                          --------->MYB111(1)                                 --------->ATHB12                                      --------->ARR14(1)                             <---------ATHB51                                          --------->CCA1(2)                             --------->ICU4                                           --------->ARR11(1)                           --------->YAB1                                             <---------ARR11(3)                          <---------AHL20(2)                                  --------->TOE1(2)     <                          --------->AHL20(2)                                --------->ARR11(3)  <----                         --------->AHL20(2)                                 --------->GLK1(2) <------MYB46(1)            *TSS  <-------MYC3   -------->HAHB4                             <---------ARR14(2)<------MYB83           --------->At4g35610  <---------YAB1                        ----------->GT1 --------->ARR11(3) ---------->GT1   ------->MYC3<---------ICU4                       --------->YAB1     --------->ARR14(2) --------HSFB2a(2)------->MYC2--------->YAB1                    <------------CBF      <---------ARR14(2) ------->HSFB2a(2)<-------MYC2-------->HAHB4--------->HSFB2a(2)<---------AHL20(2)    <---------HSFB2a(1) -------LBD16  <---------ALFIN1 --------->ICU4                 --------->ATHB12     ----------->ARR10   tctggaaacaatgtgctccacgttctatttaataatgatagagtctccagaccaaaaacaaacatttattgatagtaaaatctgggaagatttggtaggg  1268700          --------->WOX13(1)      --------->GLK1(1)                                         --------->YAB1                     --      <---------GLK1(1)                                       --------->AtLEC2------->MYC3         <- ----------DOF2                                  <-----------RAV1(1)          <-------MYC3        <-- -----ZAT18      --------->YAB1         ---------->DOF2      --------->WOX13(1)  <-----------HVH21---   aactttggaaatccatcaacaataaatgtattgtctgtgagtgaaagagaactgttggagagtcattcaaaatgaacacacatggtcagaaaacatggac  1268800                                                       ----------->HVH21                                                     ----------->RAV1(2)                                                     --------->ZAT2                                                     <---------At4g35610                ------>ZmHOX2a(1)                    --------->At4g35610            <---------PCF2    --------->ANAC46     <-----------RAV1(2)     <---------ATHB12       --------->ANAC46     <-----------HVH21    <-----------HVH21       <---------ALFIN1    --------->WOX13(1)   ------>ZmHOX2a(1)      --------->AtMYB61   <------ZmHOX2a(2)                                 ----- ------->ARR14(2)         <---------ALFIN1--------->ALFIN1                            --------->ATHB12 --------ARR14(2)   --------->ANAC46    <---------ANAC46  --------->ZAT6             <-------TEIL <-- -------CCA1(2) =====================================HOX2a_HOX2a              ----------->GT1   <---- ------>GLK1(1)--------->TOE1(2)       --------->DAG2<---------ZAT2       ---------->DOF2  <---------YAB1   atatcctatcagtggctcctacgagcgaccacacctcatgtaaggtggatcagtcagctgacactattttgttttgaaaagagtaaattcattgttattc  1268900                                                                <---------ANAC58                                                                <---------ANAC58       <---------ANAC58                                 --------->ANAC58                       ------       <---------ANAC58                       --------->At4g35610                            <-------    <------ZmHOX2a(1)           ----------->GT1 <------ZmHOX2a(2)                   <----------DOF2 ---->YAB1             --------->GLK1(1)      <---------At4g35610               <------------MYB.PH3(1) -------YAB1      --------->At4g35610 --------->AHL20(2)--------->ANAC46       --------->RAP2.6(3) -----ICU4        <---------At4g35610 <---------AHL20(2)--------->ANAC58      --------->MYB52(1)<----   attataggagcttgttttgtagcagaattcaacacagtatataatttcagatcagaccaagacatggccttccatcacagtaacggctttgcctctcagg  1269000                                                              ----------->RAV1(1)                               ------>ZmHOX2a(1)           --------->ANAC58                     -----                              --------->TOE1(3)            --------->ANAC46                     -----       <---------At4g35610    --------->TOE2(3)  --------->HSFB2a(2)                          <------ZmHOX2a(1) --->LBD16                 ------->TEIL          <---------HSFB2a(2)                 --------->WOX13(1) ----RAV1(2)        <---------HSFB2a(2)       ------>ZmHOX2a(1)                    <---------ATHB12 --ZmHOX2a(1)       --------->HSFB2a(2) <---------ALFIN1   --------->ANAC58       <---------ARR11(3)   agaaccctctgcttctccttgtctagatgaatccttatcgttccactcctactcgaagcctaagcaacatttccaaaaactcaaaatcattcactaggaa  1269100  Previous    Next  AGI:  At4g02850.1    Description:  phenazine biosynthesis PhzC/PhzF family protein. similar to phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] (TAIR:AT1G03210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22510.1); contains InterPro domain Phenazine biosynthesis PhzC/PhzF protein; (InterPro:IPR003719) Range:  from: 1266463    to: 1268612    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02860.1    Description:  catalytic. similar to phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] (TAIR:AT1G03210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22510.1); contains InterPro domain Phenazine biosynthesis PhzC/PhzF protein; (InterPro:IPR003719) Range:  from: 1268713    to: 1270525    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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