Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->ANAC55(2)                                                                                        --------->ANAC46                                                                                        <---------ANAC55(2)                                                                                        --------->ANAC58                                                                                        xxxxxxxxxxxxx                                                                                        --------->ANAC58                                                                                       <---------LBD16                                                                                      --------->MYB52(1)                                                                                    <---------HSFC1(2)                                                                                ----------->GT1 -------AHL20(2)                                                              <---------ANAC46 -------YAB1                                           --------->AHL20(2)    <---------LBD16     <--- ----->AHL20(2) <---------DAG2                <---------YAB1               ----------->HVH21     <--- ------AHL20(2) <----------DOF2  --------->ANAC46 ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ttaattcaagttgaatcactttttgacgagattatgcgaaatcaagttttgatggaaaaaaatatggaattgtgtttttgacgggaaactacggaatcac  1258200                                                                 <---------ATHB51                                                                 --------->ICU4                                                           <------NtERF2                                                           ----------->GT1                                                          --------->LBD16                                                         <---------ANAC46                                                         <---------ANAC58                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                         >>>>>>>>>>E2Fa     <---------ANAC55(2)                                                         <---------ANAC58   --------->ANAC55(2)                                                        <<<<<<<<<E2Fd       <---------ANAC55(1)                                                        <---------LBD16     <---------ANAC46                                                        <<<<<<<<<E2Fc       <---------ANAC58                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   xxxxxxxxxxxxxxxx>smallRNA(s)            ----------->GT1                     --------->ANAC55(2)         <---------ANAC58         --------->GLK1(2)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ------->TEIL --------- -------DOF2<---------ANAC46    ----------->GT1 <---------ANAC55(2)        <-----------------------TaNAC69(2) ------DAG2 <---------ANAC55(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------TOE2(3)<----------ID1 <   tttttgacgagattatgtgaaatcaagttttgactggaaaatttggaatcacgtttttggcgggaaaattatggaattacgtatttagcgaaaaatgtga  1258300                                                                                                -----                                                                                               <-----                                                                                          <---------ICU4              <------ZmHOX2a(1)                     <---------ZAT14                      <---------ATHB12             ----------->GT1                <---------ZAT18                       --------->DAG2<----  <---------ANAC55(2)                       <---------ZAT14       <-----------RAV1(1)    --------->ICU4  --------->ANAC55(2)                       --------->ZAT18       --------->ALFIN1<---------TOE2(3) -->GT1----------->HVH21               <---------ZAT14        ---------->DOF2<---------YAB1    <----- -----------GT1           <---------YAB1    --------->ZAT14 --------->MYB46(3)--------->YAB1   ------   aatcacgttttgacgaggaaaattagttcttatttgttgtgaacagtgaactagtgaagttaaccaaagtgttgcagttttgataaggctaatgactact  1258400             <---------AHL20(2)             <---------YAB1        --------->ATHB12                       --------------->AtSPL8       --------->ICU4                          <---------------AtSPL3 ---------->AGL15                          <----------DOF2                             --------->ANAC58 ------------AGL3                       --------->ARR11(3)                       <------NtERF2 -----------AGL15                       <---------ARR11(3)               <------------CBF       ----- ------------AGL2                   ---------->DOF2                     <<<<<<<<<RAP2.2--------->ANAC58 ----------->AGL3                 <---------YAB1        <----------DOF2<---------TOE2(3)     --------   aattttagaatgatttttattgactgagagaaaattttgaaagttcttttatgtactgcttttattttggttttagattgggccgagacaaggcccaaca  1258500                                                                                              -------                                                                    *TSS                      <------MYB46(1)                                                         <---------ZAT2                       <------                                                         --------->At4g35610                  <------MYB83     --------->At4g35610                                 <---------At4g35610                  <------ ----->DOF2     --------->ANAC58        --------->At4g35610     --------->ZAT14             <--------P --->RAV1(1)    --------->ANAC58        <---------At4g35610     <---------ZAT14    --------->YAB1<---   aagaaatagctcaaacacactcacttagcaaattactcaaacagcagagagagagagagagctcagtaaactaaacaaaaatgaataaaaacatgttggt  1258600                                                       <------NtERF2                                                       --------->LBD16                                                       ------>NtERF2                                                      --------->RAP2.6(2)                                                      --------->DEAR3(1)                                                     <------NtERF2                                                     --------->ATERF1(1)                                                     --------->RAP2.3(1)                                                    ------>NtERF2                                                    --------->ABI4(1)                                                    <---------ATERF1(1)                                                    <---------RAP2.3(1)                                                   <---------DEAR3(1)                                                   --------->RAP2.6(2)                                                   --------->RRTF1(3)                                                   --------->ANAC46                                                   --------->RAP2.3(2)                                                   --------->RRTF1(2)                                                   --------->RAP2.3(3)                                                   <---------ALFIN1                                                   --------->DEAR3(1)                                                   <---------ATERF1(2)                                                   --------->ATERF1(2)                                                  --------->DEAR4(2)                                                  --------->RAP2.6(1)                                                  --------->ATERF1(1)                                                  --------->RAP2.3(1)                                                  --------->RRTF1(1)                                                  --------->ORA47(2)                                                 --------->At4g35610                                                 <---------At4g35610                                                 <---------DEAR4(2)                                                 <---------DREB2C(1)                                                 ------>NtERF2                                                 <---------RAP2.3(1)                                                --------->RRTF1(3)                                                --------->RRTF1(2)                                                <---------ALFIN1                                                --------->RAP2.3(3)                                                --------->ANAC46                                                --------->RAP2.3(2)                                                --------->DEAR3(1)                                                --------->RAP2.6(2)                                                <---------DEAR3(1)                                               --------->RRTF1(1)                                               --------->DEAR4(2)                                               --------->RAP2.6(1)                                               --------->ATERF1(1)                                               <------NtERF2                                               --------->RAP2.3(1)                                               --------->ORA47(2)                                               --------->ERF1                                              --------->At4g35610                                              <---------DREB2C(1)                                              <---------DEAR4(2)                                              --------->ABI4(1)                                              <---------At4g35610                                              ------>NtERF2                                              <---------RAP2.3(1)                                              <---------ATERF1(1)                                             --------->ANAC46                                             <---------ALFIN1                                             --------->RAP2.6(2)             <---------ALFIN1                                             --------->RRTF1(3)             <------NtERF2                                             <---------ATERF1(2)            --------->ATERF1(1)                                             --------->DEAR3(1)            ------>NtERF2                                             --------->ATERF1(2)           <---------ATERF1(1)                                             --------->RAP2.3(2)           <---------RAP2.3(1)                                             --------->RRTF1(2)           --------->ANAC58                                             --------->RAP2.3(3)          --------->ANAC46                                            --------->ERF1                <---------bZIP60(1)                                            --------->DEAR4(2)            --------->ATERF1(2)                                            --------->RRTF1(1)            --------->bZIP60(1)                                            --------->RAP2.6(1)           --------->ANAC58                                            --------->ATERF1(1)           --------->O2                                            --------->ORA47(2)            <---------ATERF1(2)                                            --------->RAP2.3(1)           <---------DEAR3(1)                                           --------->ABI4(1)              --------->bZIP60(2)                                           --------->LBD16               --------->ATERF1(1)                                           ------>NtERF2 ------>NtERF2  <---------ATERF1(1)                                           <---------ATERF1(1)          ------>NtERF2                                           --------->At4g35610         ----------->HVH21                                           <---------At4g35610         --------->DEAR3(1)           --------->AtMYB61              --------->DEAR3(1)     <---------ARR14(2)         ------>NtERF2                    --------->ANAC46     --------->ZAT14        --------->LBD16                  <---------LBD16----------->HVH21<------NtERF2      <---------LBD16              <----------DOF2--------->ERF1 <---------REM1(2) --------->ALFIN1    ------>NtERF2                 <---------DAG2<---------ATERF1(2)    <---------DEAR3(1)  ---------->CDC5                 <----------DOF2<---------ATERF1(1)--------->ANAC58 -->MYB55(2)   ------->GAMYB    ------>NtERF2<---------DEAR3(1)<---------ZAT18------>NtERF2       <-- ---DEAR3(2) ------>MYB46(1)   --------->DEAR3(1)--------->ABI4(1)  --------->ANAC46              <-- ---MYB46(3) -------->P        --------->DREB2C(2)<------NtERF2<---------ETT(2)   --------->LBD16 --- ------ZAT18 ------>MYB83    <---------At5g28300--------->ATERF1(2) --------->ANAC58  <---------REM1(1)   tcgctctgcccggccaaccctagcctccattcaccgccttttctccgccgccgccgccgcgactgtggacacggcgacggcacccgtggtgaagcctcgc  1258700                                             <-------GAMYB                                            --------->MYB55(2)                                            --------->MYB111(1)                                            --------->MYB111(2)                                    --                                            --------->MYB46(2)                                     --          --------->DAG2                    --------->MYB52(2)                                     --         ---------->DOF2                    <---------MYB46(3)                                   ----       <------ZmHOX2a(1)                   <---------MYB55(1)                                 -------    <------ZmHOX2a(1)      ----------->RAV1(1)       <---------------------WRI1               -------  --------->ALFIN1  --------->GLK1(2)--------->ARR11(1)            <------ZmHOX2a(1)          ------- -------At4g35610   --------->ARR14(2)    <---------MYB52(1) --------->ANAC58              <---------ARR14(2) ----NtERF2     <------ZmHOX2a(1)---------->DOF2    <------ZmHOX2a(1)                      --------->ARR14(2) ------>At4g35610   <---------ARR14(2)--------->MYB52(1)     --------->ANAC58           <---------ANAC46   agcggaggaggaaaaggaggagaatcggccaacaaaaaagaaacggtagttggaggaagagacactctaggagggagattactaagccttgtgtatacga  1258800                    --------->ANAC46                    --------------->AGL15         <---------MYB52(1)        <-------GAMYB       --------->DEAR3(1)      <------NtERF2<-----------------AGL3     <---------ZAT18--------->TOE2(3)     ------>NtERF2 <-----------------AGL2    --------->DEAR3(1)   <------NtERF2   ----------------->AGL3   --------->At4g35610   <---------ABI4(2)<---------------AGL15   <---------At4g35610                                 <---------ARR14(2)                         ---  <---------ATERF1(1)--------->LBD16                   --------->ARR14(2)                         --- ------->ANAC58    <-----------------AGL1         --------->ANAC58                           <------ZmHOX2a(2) ------->ANAC46    ----------------->AGL1         --------->ANAC58                          <-------- ------->ANAC58    ----------------->AG          --------->SPL7                  <---------ARR11(3) ------>DOF2       <-----------------AG         <---------MYB52(1)               --------->ARR11(3) -->ANAC46         ----------------->AGL2      <---------SPL7------->TEIL --------->TOE2(3) --------- -->ANAC58   <-----------GT1                  <---------ANAC58        <---------CCA1(2)  <---------TOE1(2) -->ANAC58<---------MYB46(3) ---------->DOF2  <---------ANAC58      --------->YAB1   <-------TEIL ---   aacgcagcgccgttgttactatccgtaaatggaaagaagaaggccattccgttcgcaaatacgaacttaatcgtatcgttagagagcttcgtaagatcaa  1258900                      <---------ANAC58                      ----------->GT1         --------->ANAC58         --------->ANAC46         --------->ANAC58 ------>ANAC58        <---------ANAC46 ------>ANAC46        <---------ANAC58 -ARR11(3)           <-------TEIL                                                           <-------- >ARR11(3)       <---------TOE2(3)                                     ----------->GT1      <-------- ------>ANAC58   <---------TOE1(3)                  ----------->GT1   --------->ALFIN1      <--------   acgctataaacacgctcttgaggttcgtgaaatttctctcaattttgaattcgattgtgaaaactctgcgaagtggtaaaatgtttttttttttgtgtgt  1259000                                                  <---------At4g35610                                                  ----------->GT1                   <---------MYB46(3)             --------->At4g35610      --------->CCA1(2)                         <-----------RAV1(2)                         <--------     <---------ARR11(3)                       --------->ANAC58                            --------->LBD16     <---------ARR14(2)                       --------->ANAC46                           <---------ANAC46     --------->ARR14(2)                   --------->CCA1(2)                              <---------ANAC58     --------->ARR11(3)                  <----------ID1                                  <---------ANAC58   ----------->ARR10<-------GAMYB--------->ARR11(3)                                   --------->ARR14(2) --------->REM1(2) <------MYB83  <---------ARR11(3)                                   <---------ARR14(2) -ANAC46           <------MYB46(1)--------->CCA1(2)                              >>>>>>>>>RAP2.2 -ANAC58          <---------AtMYB61  ---------->DOF2   --------->ICU4          <---------ARR11(3) -ANAC58    <---------AtLEC2 <------ZmHOX2a(1)--------->ANAC58                 --------->ARR11(3)   gtgtgtagatatgtgaatggatggttgtacaggaagatataaagctacaagcaggtgattatgctgtacatttggatttgatatctaaaatccgtggttt  1259100  Previous    Next  AGI:  At4g02820.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G02150.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64701.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62249.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1258568    to: 1260665    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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