Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------                                                                                              <------                                          ------>ZmHOX2a(2)                                   -------                                        <---------AGP1                           --------->STY1(2)                                        <-----------ARR10                       --------->ANAC46-----                             ------>ZmHOX2a(2)      ---------->ARF1   <---------ZAT14        --------          ----------->GT1  --------->ARR11(3)       ---------->ID1    --------->ZAT14      <---------At4g35610 <------ZmHOX2a(1)         <---------ARR11(3)    <xxxxxxxxxxxxxxxxsmallRNA(s)  ------>ZmHOX2a(1)----- ------MYB52(1)      <--------P        <---------CCA1(2) ---------->DOF2  <----------DOF2<-----------RAV1(2)   ttaggaaacactctgtaaaactggtaagtgatcttgtacttggatctaagccttgtccccaaagctaaacactgctctttcctcgctagcttcagaagat  1229500                                            --------->ARR11(3)                                            <---------AGP1                                            --------->ARR14(2)  <---------HSFB2a(1)                       <---------ARR11(3)             <---------ANAC46  <---------HSFC1(2)           <---------ETT(2)                           <---------TOE2(3)  --------->HSFC1(2)           --------->ETT(1)                     <-------MYC2  --------->HSFB2a(1)         --------->RAP2.6(3)                   <-------PIF5 --------->ARR14(2)         =========================HOX2a_HOX2a    ------->MYC2 <-----------ARR10          ========================HOX2a_HOX2a     ------->PIF5 <---------ARR14(2)      ============================HOX2a_HOX2a    <-------MYC3 ----TEIL                ===========================HOX2a_HOX2a     ------->MYC3 ---->ARR14(1)           ------>ZmHOX2a(1)  --------->AGP1         --------->bZIP60(2) ----ARR14(2)       <---------At4g35610 ---------->DOF2            <---------TGA1a --->ARR14(2)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              --------->TGA1a ----GLK1(2)        <---------ZAT2  <---------At4g35610            --------->ANAC46 --->ARR11(1)    <---------At4g35610--------->At4g35610            --------->O2 -->HSFC1(2)--------->ICU4  ------>ZmHOX2a(1)                --------->GLK1(1) ---HSFB2a(1)   ===================HOX2a_HOX2a      =========================bZIP_DOF            <--- ---HSFC1(2)<---------YAB1----------->RAV1(2)<------ZmHOX2a(2)     <---------O2                  <xxx -->HSFB2a(1)   ------>ZmHOX2a(2)<------NtERF2------>ZmHOX2a(2)    --------->ANAC55(2)           <--- ---->CCA1(2)   ================HOX2a_HOX2a <---------ARR14(2)   <---------ALFIN1            <xxxxxxx --->ARR10--------->YAB1<---------ALFIN1=====================================bZIP_DOF   <---------ALFIN1 ---->GLK1(2)<---------ICU4 <-----------RAV1(1)     <----------DOF2==================================   tcggaccttctctcatgatcgctgctcctcctgtcggcatctcaaagatctgttctttcggtgagttccacgtgataacgtagaactcttccacttgcgc  1229600                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                                <----                                                                             =====================bZIP_DOF                                                                             <---------TGA1a    -----                                                                  <---------ANAC55(1)          <-----                                                                  <---------ANAC46             <-----                               <---------ARR11(3)                 ----------->GT1      <----------DOF2                               --------->ARR14(2)                 <---------ANAC58<---------At4g35610                               --------->ARR11(3)                 <---------ANAC58--------->HSFB2a(1)                   <---------ANAC58                              <------NtERF2    <---------HSFB2a(1)                   <---------ANAC58                             ------>NtERF2--------->ANAC46  <-----                  --------->ABI4(2)                            --------->ALFIN1   <---------ZAT2<----                  <---------MYB46(3)        --------->ALFIN1   <---------DEAR3(1) <---------HSFC1(2)<          <xxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC46    --------->ATERF1(1) --------->At4g35610 <---------ANAC46 --------->HSFC1(2)   <---------DEAR3(1)   <---------DEAR3(1)    --------->HSFC1(2)- -------DOF2--------->MYB52(1) <---------ARR14(2)          <---------LBD16   --------->O2 <---------ANAC46 xxxxxxxxxxxxxxxxxxsmallRNA(se3)<------ZmHOX2a(2)       --------->ZAT2       <---------O2 <---------ANAC58 ------DAG2--------->AtMYB61 ----------->ARR10          --------->At4g35610  --------->TGA1a   <----- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(2)      <---------ZAT2 <---------ARR14(2) <---------ANAC58 =======bZIP_DOF<---------MYB52(1)  ----------->HVH21   <---------At4g35610 <---------LBD16   <------NtERF2   tttacgtagaagaccaccggtgcttccagcgaagatcggagacggtgtgtttgggtctagctgcggtggcgtgaatcccacgggagcttctttcgtggcg  1229700               <---------LBD16               --------->At4g35610               <------NtERF2               --------->ATERF1(1)              <---------DEAR4(2)              <---------RAP2.6(1)              <---------RRTF1(1)              <---------ATERF1(1)              <---------ORA47(2)              <---------RAP2.3(1)              ------>NtERF2             --------->ALFIN1             <---------DEAR3(1)             <---------RRTF1(3)             <---------ATERF1(2)             --------->DEAR3(1)             --------->ATERF1(2)             <---------RAP2.6(2)             <---------RRTF1(2)             <---------RAP2.3(3)             <---------RAP2.3(2)            --------->RAP2.3(1)          <---------RAP2.3(2)          --------->DEAR3(1)         <---------At4g35610         --------->At4g35610      <---------ZAT2      <---------At4g35610      --------->ZAT2      --------->At4g35610     ----------->RAV1(1)                                                            <-------GAMYB   <------NtERF2<---------ANAC46                                                   <---------MYB46(3)   --------->At4g35610                                                             --------->MYB55(2)   <---------At4g35610                                                             --------->MYB111(2) -------->ATERF1(1)                                                               <--------P ---->NtERF2<------NtERF2                                                        <-------GAMYB --------ATERF1(1)<------NtERF2               <---------ANAC58                   <---------ANAC46 -------DEAR3(1)<---------DEAR3(1)            <---------ANAC46                   <---------ANAC58 -------PCF2--------->ATERF1(1)               <---------ANAC58                   <---------ANAC58 ----->ATERF1(1)--------->ALFIN1              <---------RAP2.6(2)               <------MYB83 ---NtERF2<---------DEAR3(1)                 <---------LBD16                    <------MYB46(1) -----RAP2.3(1)<---------At4g35610        <---------ARR14(2)                   <---------MYB46(3) -----ATERF1(1)<---------ABI4(1)       <------NtERF2                           --------->MYB55(2) ---->LBD16 <---------ABI4(1)         <---------LBD16                         <---------MYB55(1) ----ANAC46<---------ATERF1(1)       <---------ANAC46                       <---------DEAR3(2) ----ANAC58<---------RAP2.3(1)       --------->DEAR3(1)                    <---------DEAR3(1) ----ANAC58<---------DEAR4(2)       <------NtERF2<---------ARR14(2)--------->ARR14(2) -----MYB46(3)<---------ERF1      <---------DEAR3(1)   <---------REM1(1)  --------->SPL7 ---------At4g35610    --------->GLK1(2)  --------->ARR14(2)<------ZmHOX2a(1) --------->ALFIN1  ----- -------->At4g35610  <------ZmHOX2a(1)------>NtERF2 <---------AtMYB61   ----------->HVH21    -------- ----DEAR3(1)<---------ANAC46    <---------LBD16 --------->ARR14(2)<---------ARR14(2)       ---------   ggggctgcagcagcggcggcggaggaatctgttttctcggcgcggattgcggttttggtgaaggagagggatttgggacggtgggttgttgagaaaaagt  1229800                           <--------P                         <---------DEAR3(2)                         --------->MYB55(2)                        <---------DEAR3(1)                      <---------RRTF1(1)                      <---------RAP2.3(1)                     --------->At4g35610                     <---------RRTF1(3)                       <---------At4g35610                     <---------ANAC58                    <---------ANAC46                     <---------RRTF1(2)                  <---------ANAC58                     <---------RAP2.3(2)                 <---------ANAC58                     <---------RAP2.6(2)                <------NtERF2                     <---------RAP2.3(3)               ------>NtERF2                     <---------DEAR3(1)                <---------DEAR3(2)                     <---------ANAC58                  <---------RAP2.3(1)                  --------->ALFIN1                    <---------DEAR3(1)                 <-------GAMYB                        <---------RAP2.3(2)                <---------MYB46(3)                   --------->ATERF1(1)               <---------AtMYB61                     <------NtERF2              <------NtERF2<---------MYB55(1)       <---------ATERF1(1)           <------NtERF2<---------ANAC46         ------>ZmHOX2a(2)           --------->ATERF1(1)                  <------ZmHOX2a(2)           <---------LBD16<-------GAMYB        <---------ARR14(2)          ------>NtERF2------>NtERF2           --------->ARR14(2)          <---------RAP2.3(1)<-------GAMYB     --------->ARR11(3)      ----------->HVH21<------NtERF2           <---------ARR11(3)    <---------ANAC58 <---------ANAC46 <------NtERF2<---------LBD16    <---------ANAC58<---------LBD16 <---------ANAC46--------->LBD16                       <----------  --------->GLK1(2)--------->ALFIN1<---------LBD16<---------LBD16                         ----------- ---->ALFIN1 --------->LBD16<---------MYB46(3) --------->ARR14(3)                 <-----------GT1 ->DAG2  --------->ANAC46<---------MYB46(3)    <---------ARR14(3)               <-----------GT1 ->DOF2XXXXXXXXXXXXXXXXXXXXXXX>MIR404--------->LBD16------>NtERF2>>>>>>>>>>>>>>>>>LFY --------->ZAT14   ggagtttcttgacgccggaggttgcggcggttgttatggcggagttgaagatcccggcggcttgagttgccattgttttttttttctctgttctctaatg  1229900                                                                      <-------GAMYB        --------->ATHB12                                             --------->MYB55(2)<---------TOE2(3)       <----------DOF2                                               <-----------RAV1(1)      <---------ANAC58                                               <---------MYB46(3)<---------TOE1(3)      <---------ANAC58                       <------------CBF        --------->MYB111(2)     --------      <---------ANAC46                       *TSS                    --------->MYB52(2)--------->DAG2 -----AGL15                           ----------->GT1             ------------>MYB.PH3(2)    -------- ---->AGL15                       ---------->DOF2          --------->GLK1(2)   <---------ANAC46     <   agcaaattgcttattggtatgttttgatgagaagagaaaagagataatattgcgaaatgagaagctagagtttgttggattaagtggataaggtaaccaa  1230000                                                   ===========================================bZIP_DOF                                                   ==========================bZIP_DOF                                                   ==========================bZIP_DOF                                                   ===========================================bZIP_DOF                                                   <---------bZIP60(2)                                                   --------->bZIP60(1)                                                   --------->TGA1a                                                   <---------bZIP60(1)                                                   --------->O2                                                   <---------O2------>NtERF2                                                   <---------TGA1a                              <----                                                   <---------TGA2(1)                    <----------DOF2              --------->ARR11(3)                   --------->TGA2(1)                  <--------------       --------->MYB46(3)                        <---------TGA2(2)                 <----------DOF2  -       <---------ATHB12                         ----------->HVH21              <----------DOF2------- ->MYB46(3)   <---------ARR11(3)                ----------->TGA1         <---------YAB1<------------- ---->CBF     <---------GLK1(2)               --------->At4g35610 <----------DOF2<------------------- ------ZmHOX2a(1)                     <---------YAB1       <-----------GT1 <---------GLK1(2) <-------   taggattcaaccattagatttttctcttacccatcttattctgatattatctgacgtcgttttgcctcctttgttctgattctttcttttctttttttct  1230100                                                  <---------WRKY18(1)  <----------DOF2                                --------->WRKY12 ------DOF2                                      --------->WRKY38(1) --------->ATHB12 ----------ANAC81                             --------->ATHB12      <---------ATHB12 --------->ID1                               <---------YAB1       ------>MYB83 --->ID1                                 <<<<<<<ZML2              ------>MYB46(1) -----------ANAC81                    <---------HSFB2a(2)       <---------MYB59             --------- -----ANAC81                          --------->HSFB2a(2)    <------ZmHOX2a(1)              <-------- ----GT1   <---------ARR11(3)      --------->GLK1(2)----------------->AGL1   <---------WOX13(1)     <   ttttctttttcaatatcaattcaaattaaggcctgataatctagaacatcattgaccattagaggaccaaatcatttggattgatcatctatatgtgttg  1230200                                                      --------->GLK1(2)                                                      <-----------ARR10                                                     <---------GLK1(2)                                                  <---------HSFB2a(2)                   <---------At4g35610                                                  --------->HSFB2a(2)                --------->SPL7     <---------At4g35610                          --------->HSFC1(1)              <---------ANAC58     --------->At4g35610                    <---------------AGL15                 <---------ANAC58 >ALFIN1                                    <---------DAG2<-----------GT1        <---------------AtSPL8 ---RAV1(1)                                 <----------DOF2                      <---------------AtSPL3 ----------DOF2                   --------->YAB1  <---------HSFC1(1)             --------->MYB59   ggctttgagcttagaagattgaaacttgggcctgaatcaaaattagctttttctagaatcttactacataggccttgttcaattgggtaccgctcataga  1230300                                                               <---------LBD16                           <---------TOE1(2)                  <---------bZIP60(2)                           <---------TOE2(2)     <-----------ARR10          --------------->AGL15                      --------->TOE1(2)          <---------ARR11(1)        --------->ANAC55(2)         --------->GLK1(1)--------->LBD16        --------->ARR14(2)      <---------AHL20(2)      --------->LBD16 <---------SPL7     --------->YAB1       <---------ANAC46 <---------YAB1     --------->HSFB2a(2) <---------TOE1(1)       <---------ARR14(2)      <-----------GT1      <------     <---------HSFB2a(2) <---------TOE2(1)      <---------CCA1(2)    --------->AHL20(2) <---------YAB1    <---------LBD16   <-----------HVH21 <---------YAB1     ----------->HVH21<---------------AGL15   tggtttcccagaattctagctaatcgtccgaggttactacttatcatcccaaatctactgtatgacctggattatttacttattctagttatgttttttc  1230400  Previous    Next  AGI:  At4g02770.1    Description:  PSAD-1 (photosystem I subunit D-1). Identical to Photosystem I reaction center subunit II-1, chloroplast precursor (psaD1) [Arabidopsis Thaliana] (GB:Q9S7H1;GB:Q8L9B6); similar to PSAD-2 (photosystem I subunit D-2) [Arabidopsis thaliana] (TAIR:AT1G03130.1); similar to PSI reaction center subunit II [Citrus sinensis] (GB:BAF80479.1); contains InterPro domain Photosystem I protein PsaD; (InterPro:IPR003685) Range:  from: 1229111    to: 1229945    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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