Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------------AGL15                                                                        --------------->AGL15                                                                       ----------------->AGL1                                                                    <---------ANAC58                                                 <---------YAB1     <---------ANAC58                                            --------->YAB1      <---------HSFB2a(1)                                         <---------bZIP60(1)    --------->HSFC1(2)                                         --------->GLK1(1)      <---------HSFC1(2)                                         <---------TGA2(1)      --------->HSFB2a(1)  --------->YAB1                    <---------ANAC55(2)   <---------ZAT14 ->ALFIN1                 <<<<<<<<<TAC1  --------->bZIP60(1)  <---------GLK1(2) --RAV1(1)     ----------->HVH21    --------->ANAC55(2)<---------ZAT6  ----------------->AGL2    ----   agtagcataaacagtctatgacataaacactcgaaaatatgtgatatcatcaagatagagttcagaattttcgtccaaaataagaaacaaggctcttaaa  1228500                                                                           <-------TEIL       <------                                                                        <---------MYB46(3)    -------                     --------->ANAC58                                 <---------MYB52(1)--------->HSFB2a(2)             ----------->GT1                                --------->ANAC58  <---------MYB52(1)     <---------YAB1  --------->ANAC58          ------>NtERF2--------->ANAC58--------->MYB52(2)------- ----->YAB1 <---------WOX13(1)--------->MYB52(1)<------NtERF2        <----------DOF2    <---------HSFB2a(2)   catagtcactatagattgaaaaaacgcacagaaaacggtagagaaatggtgccaaattccacaaacaatgcctttggttcgttttttgttttggaaaatc  1228600                            <---------ARR14(2)                            --------->ARR14(2)                           ------>MYB46(1)                           ------>MYB83                          <---------ICU4    ----------->GT1                 <---------YAB1                                 --------->ICU4<---------RAP2.6(3)      --------->ANAC46   <---------MYB59                      --------->YAB1 --------->RAP2.6(2)   --    <-----------GT1 <----------DOF2                          <-------TEIL  --------->At4g35610     <- ---ARR11(3)   --------->YAB1                         <---------ANAC58     <---------At4g35610     == -->ARR11(3)  <---------ATHB12                        <---------ANAC58 --------->ARR11(3)        ---- -->GLK1(2)   <------ZmHOX2a(2)                      --------->At4g35610<------ZmHOX2a(2)        ----   tctattttacgcttcgatcatgctttaccaaatccaattgtgagagtgtataagtagcttacattcataatgagatcagccgaaatggaaattttgaacg  1228700                                          --------->At4g35610                                          <---------At4g35610                                      <-----------HVH21                      ----------------->AGL1             --------->ZAT2          <---------ANAC55(2)             <---------ABI4(2)       <---------ANAC58             --------->ZAT14         --------->ANAC55(2)             <---------ZAT2          --------->O2             <---------ZAT14         --------->TGA1a            -------->P   <------ZmHOX2a(2)           --------->ANAC46          <---------ANAC58          --------->WOX13(1)      <---------ARR14(2)             <---------TGA1a         ==========================HOX2a_HOX2a      --------->ARR14(2)      --------->HSFB2a(2)            <------ZmHOX2a(2)  ------>ZmHOX2a(1) -------->DOF2<---------ALFIN1<---------HSFB2a(2)       --------->CCA1(2)   <---------ARR14(2)     -- --------DOF5.7(2) <---------MYB52(1)<---------O2--------->ATHB12--------->MYB46(3)        --------->ARR11(3) ==============================================bZIP_DOF<---------ARR14(2)   --------->ARR11(3)    <-- ----->DOF5.7(2)  =============================MYC_MYB --------->ARR14(2)   --------->ARR14(2)   <--- ----->At5g28300  <-------GAMYB      ====================================MYC_MYB--------->LBD16 -----   gtaacgcgattccacagcaccgttgccaaaatcgagaagacgtgagccgaattagtggatacgatcaaccaataagacgatcctgagttgaattatctcc  1228800           --------->ZAT6   ----------->HVH21 <---------ANAC58 <---------ANAC46                           --------->MYB52(2) <---------ANAC55(2)                      <---------MYB52(1) --------->O2                             --------->DOF5.7(2) <---------ANAC58                        --------->TOE1(3)              <---------TOE2(3)        ---- <---------O2                            --------->TOE2(3)    <---------ARR14(2)   ================== ----------->DYT1                       ----------->GT1       --------->ARR14(2)   ------>ZmHOX2a(2) -------MYB52(1)               ----------->GT1             --------->YAB1        <---------ARR14(2) --------HVH21              <---------DEAR3(1)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        ---- ---->ANAC46           <---------ICU4  <---------TOE2(3) --------->MYB52(1)      --------->ARR14(2)   gtcgcgtgaaggaacactcagataatcagggcgatgtaataaacgttaattacaagaacaatcggaacctcactatggttttggatcggagactgggaaa  1228900                                                                                          <----------DOF2                                                                                          ------>ZmHOX2a(1)                                                                                  ------>ZmHOX2a(2)                                                                                  ===============HOX2a_HOX2a                                                                                 <------ZmHOX2a(2)                                                                                 ================HOX2a_HOX2a                                                                                 --------->ARR14(1)                                                                                 --------->CCA1(2)                                                                                --------->ARR11(3)                                                                                <---------ARR14(2)                                                                                <---------ARR11(3)                 <---------ANAC46                                               --------->AGP1                 <---------ANAC58                                               --------->ARR14(2)---            ============================HOX2a_HOX2a                ------>ZmHOX2a(2)     --------->TOE2(3)            ------>ZmHOX2a(1)               <---------At4g35610    <---------DEAR3(1) <---------ARR14(2)          <---------ZAT18                  <----------DOF2         ==============================HOX2a_HOX2a    <-----------HVH21                  --------->ZAT18            ===============================HOX2a_HOX2a  <------------AtMYB77     <---------SPL7*TSS                     <------ZmHOX2a(2)   --------->GLK1(2) ----->ANAC58    <---------ANAC58      <---------ZAT18           <---------ARR14(2)   --------->ARR14(2) ==================HOX2a_HOX2a   <------ZmHOX2a(2)         <------NtERF2 ---------->TaMYB80   <------ ----->ANAC58 <----------DOF2<---------TOE1(2)    ---------->DOF2--------->ARR14(2)   <---------ARR11(1)   cgaaactgtcagtcctctttcgtggccatcgttcgatcaagtgtgcttctgcgaaagaggcagagacgatcggcgaatataagatccgaatcctttaaac  1229000                                  --------->ATHB12                                  <---------ICU4                                 <---------YAB1                                 --------->ICU4                               --------->YAB1                               <---------ICU4                 --------->DEAR3(1)                    -                            --------->TOE2(3)   <---------DAG2------->GAMYB                        --                            --------->YAB1      <----------DOF2        ---------->DOF2             <-                   <---------MYB52(1)   <-----------GT1      --------->DEAR3(2)               <------ -------->HVH21    --------->ALFIN1    <-----------GT1  --------->ANAC46      ----------->RAV1(1)<--- -----GT1 <------------CBF <---------YAB1  <----------DOF2   --------->MYB46(3)            --------->HSFB2a(2)   ccgaccgtttgaaattgaaccgttgggctacgataatgattttaactttcctttttctactcaaccggcccattaaagcccaacatatgccttccaaaat  1229100                                    ------>MYB83                                    ------>MYB46(1)                               <-----------GT1                         <-------TEIL                                                             <--                        <------ZmHOX2a(2)                                                         ---                       --------->AGP1                                                            ---- -------->TOE2(3)      --------->ARR11(3)                                                      ------ ------->ANAC55(2)     <---------ARR11(3)                                                      <----- --------ANAC55(2)     --------->ARR14(2)                                                     ------- ---ICU4               <---------ARR14(2)            <---------YAB1   --------->YAB1  --------->YAB1 --------GT1       ---------->DOF2  --------->MYB52(1)--------->YAB1 --------->AHL20(2)     ---------   tacgttatagtttaggcccataaaagatccattaaaccaaatggaacaacaaattatcaaaacaaaatccattaaaaattaacatgaaacatagtcataa  1229200                                                   --------->YAB1       <-------MYC3                                <---------ICU4       ------->MYC2                       ------>ZmHOX2a(2)       <-------MYC2                      <------ZmHOX2a(2)    <---------ALFIN1                    <---------AGP1 -------ICU4                            --------->AGP1 ------>YAB1                            --------->ARR11(3)               --------->TOE1(3) ----->ICU4                             <---------ARR11(3)            --------->ZAT14 --->YAB1                               --------->ARR14(2)   <---------ANAC58 ----ICU4  ------->TEIL                 <---------ARR14(2)   <---------ANAC58  --------->TOE2(3)   -- -->ICU4--------->AtLEC2               <---------CCA1(2) <----------DOF2 --------->TOE2(3)        <-- >YAB1 ------->MYC3               <---------ZAT14 <---------ATHB12    <---------ZAT14 <----------ID1   tcatcaccacatgcacatagtttttggtttttttagtttacagatcttacaaatcataactttgtttgccagtaaacttaacttcaatgggactaacatt  1229300                                                                                        ------->TEIL                         -------->P                                              <---------ARR14(2)          ====================================HOX2a_HOX2a                        --------->ARR11(3)          ------>ZmHOX2a(2)                                                      <---------ARR11(3)         <------ZmHOX2a(2)             --------->LBD16                           --------->ARR14(3)         =====================================HOX2a_HOX2a                        --------->ARR14(2)        --------->ARR11(3)             ------>ZmHOX2a(1)                  <------ZmHOX2a(1)        <---------AGP1   ------>MYB83 <---------LBD16<---------LBD16    <---------TOE2(3) --------->AtMYB61        <---------ARR11(3)<---------ALFIN1<---------ARR14(2)         <----------DOF2   <-----------GT1 -------->ID1            ------>MYB46(1)  <---------GLK1(2)   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <--- ---------GT1          --------->AtMYB61  --------->ARR14(2)  --------->ANAC46   <---------ARR14(3)   tttcccaatagatctcatgttgagaccaacaccttctcttcctggattcgccttctctggataaacaccatctttaggatgaagatattgaacctcaccg  1229400  Previous    Next  AGI:  At4g02760.1    Description:  F-box family protein. Identical to F-box protein At4g02760 [Arabidopsis Thaliana] (GB:Q9SY03); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02740.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61447.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22534.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 1223962    to: 1228941    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02770.1    Description:  PSAD-1 (photosystem I subunit D-1). Identical to Photosystem I reaction center subunit II-1, chloroplast precursor (psaD1) [Arabidopsis Thaliana] (GB:Q9S7H1;GB:Q8L9B6); similar to PSAD-2 (photosystem I subunit D-2) [Arabidopsis thaliana] (TAIR:AT1G03130.1); similar to PSI reaction center subunit II [Citrus sinensis] (GB:BAF80479.1); contains InterPro domain Photosystem I protein PsaD; (InterPro:IPR003685) Range:  from: 1229111    to: 1229945    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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