Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <-------TEIL                                              --------->LBD16                                             <---------ANAC58              <------ZmHOX2a(1)                                             <---------ANAC58 <---------ICU4                                             <---------ANAC55(2)          --------->ANAC46                                             <---------ANAC46 --------->YAB1                                            --------------->AtSPL3      <---------LBD16                                        ------>ZmHOX2a(1)    <---------ATHB12                                    --------->GLK1(2)      --------->YAB1--------->LBD16 <-----------HVH21        --------->TOE2(3)          <---------GLK1(2)    <----------DOF2 <---------HSFB2a(2)      <---------ARR11(3)  <----------DOF2   --------------->AtSPL8      --------->HSFB2a(2)   tcaggcattatctcaaacaattccctcgctttcccaagattcctgttccgtacataccctttaatcatcacattccaggaaactaaatctcgttcaggca  1223100                                                                            <---------GLK1(1)                                                                            --------->GLK1(1)                                                                        --------->ANAC46                                                                   --------->ANAC46                                                              <---------MYB52(1)<---------ALFIN1               --------->LBD16                               <-------GAMYB <---------ARR14(2)              --------->HSFB2a(2)                           <---------------AGL15              <---------HSFB2a(2)                           --------------->AGL15              <---------ANAC46                              ----------->GT1--------->ARR14(2)              <---------LBD16                              ----------------->AGL1              <---------ANAC58                         --------->YAB1   --------->ANAC58              <---------ANAC58               <-----------GT1=========================================             <---------LBD16       <---------MYB52(1) <---------ATHB12  --------->ANAC58    <--------            --------->MYB52(1) <---------At5g28300  --------->GLK1(1) --------->MYB52(1)    <--------   tttcatcgaacaacttccgggcgagttcaaactcaccgtttctcaaataaccagaaatcataccgttataagaaacggaactccacctaggcatgcgttt  1223200                                           <---------ANAC46                                       <---------At4g35610                                       <---------ZAT2                                       --------->At4g35610                               --------->ANAC58                               --------->ANAC58     ---------->DOF2      <---------HSFB2a(2)                        <---------ARR14(2)            <-    --------->ANAC58      --------->HSFB2a(2)                        --------->ARR14(2)            <-    --------->ANAC46 <---------At4g35610 --------------->AGL15 <----------DOF2                    ---    --------->ANAC58------->TEIL      ------->TEIL        <---------ALFIN1                <------ZmHOX2a(1) ========================================================MADS_MADS  <---------CCA1(2)   <---------TOE1(3) -ANAC58      --------->MYB52(2)  ------->TEIL       --------->HSFB2a(1)        <---------ALFIN1  <-- -ANAC58    <----------DOF2   <---------ZAT18        <---------HSFB2a(1) --------->LBD16<---------TOE2(3)   gaagacacgaagcgcttcgttgcatcttccagtacgcatgtagctgcttatagcaacgttccactcttttatatccgagtctccacatttaaggagaggt  1223300                                                                      <---------MYB46(3)                                                                    <-------GAMYB                                                                   <---------ANAC58            --------->HSFB2a(2)                                    <---------ANAC58            <---------HSFB2a(2)                                   --------->ZAT18           <-----------------AGL2                            <---------ANAC46        <----------DOF2                                  <---------ZAT14        <---------GLK1(1)                                --------->ZAT14  <---------DEAR3(1)                                     <---------ABI4(2) -----MYB46(1)                --------->At4g35610     --------->At4g35610 -----MYB83<---------LBD16    <---------At4g35610     <---------At4g35610                        <--- ------>MYB59  <---------ARR14(2)               --------->ICU4 --------->ALFIN1              -------- -------AtMYB61--------->ARR14(2)          ----------->GT1<---------ALFIN1  ------->TEIL  <-------TEIL   ttggtctgcgatttctggatttgggtttgtgtagctctcttcaacgagtgaaaattagctgcaccgtgtgcgttgttgcatcttcgtttaagtccattca  1223400                           ------>NtERF2                           --------->LBD16                    --------->ZAT2                    <---------At4g35610                    <---------ZAT2                    --------->At4g35610                <----------CDC5                                                                   <--               --------->At4g35610    --------->ANAC58                                ------>ZmHOX2a(2)               --------->ZAT2         --------->ANAC58                              <---------ARR14(2)               <---------At4g35610    --------->ANAC46                              --------->ARR14(2)            <---------ZAT2 <------NtERF2                                            <---------ARR11(3)            <---------At4g35610    --------->ZAT18                                  --------->ARR11(3)            --------->At4g35610 ---------->DOF2                                    <------ZmHOX2a(1)        <---------REM1(1) --------->DEAR3(1)                                   ---------->DOF2   >>>> ------TOE2(3) <---------ZAT2 ---------->DOF2                            <------------CBF   <-------- ->AtLEC2  ------->TEIL<---------DEAR3(1)             ----------------->AGL1<-----------HVH21--------   aggatgtgtaatgtagctgctgagctcgccgcgaaagagcacgaaacttgtttatttccattactgaaatgaaaacattgtcaaaggatcgtctccgtgg  1223500                                                                                  ------------>CBF                                                                          <---------YAB1                                                                         <---------ARR11(3)                                                                         --------->ARR11(3)      ---------->DOF2                     <---------GLK1(2)             --------->YAB1 -------GLK1(1)                           --------->ARR11(3)           --------->ICU4 >>>>>>GATA-1                          <---------------------WRI1      <---------ATHB12<---------ARR11(3) -ANAC46                 ------------>CBF <---------ARR11(3)       ------------>CBF    --------->ARR11(3) ->LBD16        --------->YAB1     --------->GLK1(2)       ------------>CBF --------->WOX13(1)   atttcacagaaagttttatcacaaacaaacaatgcataatctgagattttctcaaggtcgtatcaatttctcaatgatcattcagtcaatatctcgactg  1223600                                  <---------ANAC55(2)                                <---------AHL20(2)                            <---------YAB1                     ------>ZmHOX2a(2)                     <---------MYB59                    <------ZmHOX2a(2)                   <-----------ARR10                   <---------AGP1 --------->ANAC55(2)                   --------->ARR11(3)                   <---------ARR11(3)                                                              <-                   --------->ARR14(2)                                                          <-----                  <------ZmHOX2a(1)                                                       <---------ARR11(3)             <---------REM1(1)  --------->AHL20(2)                                        --------->ARR11(3)          --------->ICU4  --------->YAB1             <---------ZAT6   <-----------RAV1(1)--------->RVE1(1)        --------->YAB1    ----------->GT1          ------>MYB83 <-----------TBP   <---------ZAT6 ----        ---------->DOF2 <------------CBF           ------>MYB46(1)<---------AHL20(2)     --------->CCA1(1)     --------->YAB1<---------ARR14(2)   ----------->GT1    --------->ZAT6         ----------->GT1----   taaggcataataaagatgaaggatctaattgtaattacttaagagttaaaacctactgtaaacactatatatatgttgtacttagagttaaatatctaat  1223700                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                    --------->AHL20(2)                                                                    <---------YAB1                                                                    <---------AHL20(2)                                                                   --------->AHL20(1)          ----------->GT1                                      --------->YAB1 --------->AHL20(1)          <---------ZAT6     <----------DOF2         --------->YAB1--------->AHL20(2)   <---------AHL20(2)    <---------O2               <---------YAB1 <---------AHL20(1)   --------->AHL20(2)    --------->O2              <---------AHL20(2)   --------->AHL20(2) --------YAB1     --------->ARR11(3)               --------->AHL20(2)   <---------AHL20(2) -------CBF       <---------ARR11(3)              --------->YAB1  --------->YAB1          <---------- ----->YAB1      --------->RVE1(1)        <------------CBF    --------->AHL20(2)    <-----------HVH21 ------->GT1     --------->CCA1(1)       --------->ATHB12 ------------>CBF    <---------AHL20(1)    -   tgtaattacttagagttaaatatctcgacgtctttaaaattattcattgtaattttaataaacaataaatataattaaaaaatatttgtcacggtcgctc  1223800                                            ----------->RAV1(1)                                            ------>NtERF2                                           --------->LBD16                                     --------->GLK1(2)                                    --------->ARR14(2)                                    <---------GLK1(2)                           <---------MYB46(3)                           <---------HSFB2a(1)                           --------->HSFB2a(1)                          --------->ARR14(2)                           --------->HSFC1(2)                           <---------ARR14(2)                     ---------->DOF2<---------ARR14(2)                  --------->GLK1(2)                    --------->AHL20(2)     <---------ETT(1)         <------ZmHOX2a(1) <---------ANAC58             ---------->DOF2        <---------ARR11(3)             ----------->GT1    <---------ANAC58      ----------->TGA1<---------TOE2(3)    --------->ANAC46     <--------P            <---------ANAC46 -HVH21  <---------YAB1    <---------HSFC1(2)             <-----------GT1    <---------MYB52(1) ---------->HVH21   <---------AHL20(2)     ----------->HVH21  --------->ANAC46<---------MYB46(3)   atttgacagtgacgataaagaattaaagatggttccaagattctcccgacacaagaggttttacaggtaaggagaatcggttgtttttgcgtcttagaaa  1223900                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                               ------                                                                                              -------                                                                                             <-------                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx            --------->YAB1                --------->MYB55(2)                      <---------AHL20(1)           <---------YAB1                 <---------MYB46(3)                      <---------AHL20(2)         --------->YAB1                   <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------ICU4                   <---------DEAR3(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->ATHB12              <---------RAP2.3(1)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <--------ATHB1               <---------RAP2.3(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ICU4           <---------MYB46(3)                   <------ZmHOX2a(2) <---------At5g28300        <---------ATHB12    <------MYB46(1)<-------GAMYB            <------ZmHOX2a(1)  <-----------GT1        <---------YAB1      <------MYB83 <---------DEAR3(1)       <---------TOE1(2) <xxxxxxxxxxxxxxxx  --------->ANAC58        <--------P <---------At5g28300   --------->MYB46(3)     --------->AHL20(2)<  --------->ANAC58       <-------GAMYB<---------RAP2.6(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxx   cgggaagccaatgattataacttgtagggttggaatggttacggcggttgaggcgaacaaaaccatcgaaggatcagaccacattttatttaccattcat  1224000  Previous    Next  AGI:  At4g02750.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G56690.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09410.1); similar to hypothetical protein OsI_029864 [Oryza sativa (indica cultivar-group)] (GB:EAZ08632.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE80149.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68171.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1221116    to: 1223461    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02760.1    Description:  F-box family protein. Identical to F-box protein At4g02760 [Arabidopsis Thaliana] (GB:Q9SY03); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02740.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61447.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22534.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 1223962    to: 1228941    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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