Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                         ---------->DOF2                                                --------->ARR14(3)                       --------------->AGL15                     --------->ANAC46       <---------ARR11(3)                       <---------------AGL15                    <---------At5g28300     --------->ARR14(2)                     --------->At4g35610                   <---------CCA1(1)            <-----------ARR10                   <---------WOX13(1)                      <---------RVE1(1)            <---------ARR14(3)                 <---------ICU4                           --------->ARR11(3)            <---------ARR14(2)                 -------->HAHB4                           <---------ARR14(2)--------->ANAC58                 --------->ATHB12                         <---------ARR11(3)--------->ANAC58                <---------ATHB12            ----------->HVH21   --------->RAP2.6(3)     --------->ARR11(3) -----MYB46(3)  --------->ICU4            <---------At4g35610   <---------LBD16        <------ZmHOX2a(1) ---DOF2        <---------YAB1            --------->At4g35610  <-----------GT1       <---------TOE1(2)   gttcagtcgtattcagaaatgattgctgaaagaaggaaacgagtagctgatggttttgaagatatttacggcaaaaacaagccttcataggatcttctca  1207300                                            <---------ANAC58                                            <---------ANAC46                   <---------ANAC58         <---------ANAC58                   <---------ANAC46       <---------ANAC46                  --------->MYB52(2)     <---------MYB52(1)                <---------MYB52(1)      <-------GAMYB      ------->GAMYB             <-------TEIL   --------->ARR11(3)             --------->YAB1        <-----------GT1     <---------ARR11(3)          <-----------GT1     <---------ICU4<---------ANAC58    <-----------RAV1(1)--------->MYB46(3) --------->TOE2(3)   atgttcaaaattacattcgtttcttgcataaatcttcccttctgttgtgtgtataatataaccatcatctatggatttatctcaatttcattcacagatg  1207400               --------->ATHB12          <---------ARR11(3)    <---------TOE2(3)          --------->ARR11(3)------>ZmHOX2a(1) --------->AHL20(2)                                    -     <---------ANAC55(2)  --------->ZAT18     <---------AHL20(2)                 <-----------GT1 <---    <-------TEIL <---------GLK1(1)     <---------ZAT18             <-----------GT1               ----   tttggatacataaatcttgatttcagagtcctctaatgtagtgggcattaaaatcgaattgaaccgattatacaaaccgaaattaacccaaatataccga  1207500                        --------->DAG2                -------->P                ------>MYB83                             --------->LBD16                ------>MYB46(1)                       ------->TEIL              --------->AtMYB61                       --------->MYB52(1)             --------->MYB46(3)                      --------->MYB52(1)             <---------MYB52(2)                    <---------MYB52(2)    <---------YAB1     ---------->DOF2           --------->MYB52(1)  <---------ICU4--------->MYB52(1)               ------>MYB83 -------->TOE2(3) ------->GAMYB                  ------>MYB46(1) ------ARR14(2)--------->MYB52(1)              --------->AtMYB61                 <----------ID1     < ----->ARR14(2)--------->MYB55(1)           <-----------GT1 ----------------->AGL3                 --   aacctcattactgaaaccaaccgaataaagtgccttcgaactaaataaaccaaacgaaccggaccaattttagttcaacaaaatcgacaaattcaaatcg  1207600                                                                                          <---------AHL20(2)                                                                                        <-----------TBP                                                                                    ----------->GT1                                                                                ------->GAMYB                                                                               --------->ANAC46                                                                              --------->At4g35610          --------->DEAR3(1)                                                 --------->MYB52(1)    --------->DEAR3(2)         --------->CCA1(2)                            <---------WRKY45  --------->MYB52(1)      <----------ID1                                    <---------WRKY38(1)  ------>MYB46(1)    --------->AtMYB61                                      <---------WRKY12     ----  ------>MYB83 <---------ARR14(2)            ----------->GT1               --------->WRKY18(1)  ----- ---------MYB59--------->ARR14(2)--------->ICU4      ----------->GT1      <-----------HVH21   ------- ------->DEAR3(2)--------->MYB46(3)  <------ZmHOX2a(1)              <-----------HVH21  ------->TEIL   aaccgaaccgagccgaagaaccaccaatacgagaaatgaggaatgaagggtaaaaatgtaattcccaagaggtcatggtcaacggaatgtatatatatgt  1207700                                                                                 ----------->HVH21                                                                                <---------MYB52(2)                                                                               --------->ANAC55(1)                                                                               --------->ANAC55(2)                                                                               <---------ANAC55(2)                                                                               --------->ANAC46                                                                               --------->ANAC58                                                --------->CCA1(2)              --------->ANAC58                                           --------->O2                  ------->GAMYB                                           ======================================MYC_MYB            <------------CBF               <---------TGA1a              <---------ANAC55(2)           --------->ATHB12     <---------At4g35610                     --------->ANAC55(2)   -------          <-------TEIL    <---------ALFIN1 --------->TGA1a              --------->ANAC58      <------ <-----------HVH21       *TSS   --------->At4g35610                     --------->ANAC58    <-------- --------->At5g28300  --------->At4g35610  <---------O2            <---------MYB46(3)------->GAMYB ----->MYB52(1)    <------ZmHOX2a(2)    --------->TOE1(2)         <---------AtMYB61>>>>>>>>>MYB98 ------>HVH21     <---------ARR11(3) <---------ARR14(2)           --------->ALFIN1--------->MYB52(1) -->ANAC55(2)     --------->ARR11(3) --------->ARR14(2)  ------>NtERF2--------->MYB52(1)    ---------   aacggtgagagattcattgagatcatctccactctgctaaatccgacgagagacgacgatgccaagcggtggtaacggaacaagtaacggagtcgctaac  1207800                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                       --------->ATERF1(1)                                                                                       <------NtERF2                                                                                      <---------ATERF1(1)                                                                                      ------>NtERF2                                                                                      <---------ERF1                                                                                      <---------ORA47(2)                                                                                      <---------DEAR4(2)                                                                                      <---------RAP2.3(1)                                                                                     <---------DEAR3(1)                                                                                     <---------RAP2.3(2)                                                                                     --------->DEAR3(1)                                                                                     <---------RRTF1(3)                                                                                     <---------RAP2.3(3)                                                                                     <---------ANAC46                 <---------TOE1(2)                                                  <---------ABI4(1)            ---------->DOF2                                                        <---------ATERF1(1)            <---------DOF5.7(2)                            --------->At4g35610    ===================           --------->ARR14(2)                 --------->ANAC58                    --------->ANAC58          <-----------HVH21     --------->HSFB2a(1)        ----------->RAV1(2)    --------->ANAC46 <---------ARR14(2)     --------->MYB52(1)    --------->ANAC46                    --------->O2 --------->GLK1(1) <------ZmHOX2a(1)          --------->ANAC58                    --------->TGA1a --->DOF2 --------->DOF5.7(2) <---------DOF5.7(2)          <---------At4g35610    --------->ANAC58 ---DOF5.7(2)  --------->TOE1(2)<---------HSFB2a(1)     <---------MYB52(1)        <---------TGA1a <-- -MYB52(2)<---------MYB52(1) <---------ARR14(2)        <-----------HVH21        <---------ALFIN1  <-- >DOF5.7(2)----------->HVH21 --------->ARR14(2)        <-----------TGA1     <-----------HVH21     <--   gcgaattccaccggtaacgcaggaacaagcggaaacgttccgatatataagccataccgtcacctgaaaaccctagaaggtcacacggcggcgatctctt  1207900                                                                         ------->GAMYB                                                                        <------------MYB.PH3(2)                                                                        <---------MYB52(2)                                                                        --------->MYB46(3)                                                                      ----------->RAV1(1)                                                                    <---------At4g35610                                                                    --------->At4g35610                  <------NtERF2                                    --------->ANAC58             ----------->HVH21             <---------ETT(2)        --------->ANAC58             --------->MYB46(3)          --------->LBD16        <-----------HVH21    <---------GLK1(2)                   <---------ANAC58    ------>ZmHOX2a(1) =====================MYC_MYB           <---------ANAC46  ------>ZmHOX2a(2) -------ANAC46   ------>NtERF2          <---------ANAC58--------->ARR11(3)                    <------ -------ANAC58 --------->RAP2.6(3) --------->At4g35610  <---------ARR11(3)                  <-------- -------ANAC58------->GAMYB        <---------At4g35610  --------->ARR14(2)               --------->YAB1   gcgtcaaattctccaacgacggcaatcttctcgcttccgcttccgtagacaaaaccatgatcctctggtcagcaacaaactactctctcattcatcgtta  1208000                                                                                                    <                                                                                                    -                                                                                                    <                                                                             --------->ANAC58      <-                                                                             --------->ANAC58      <-                                                                            <---------ZAT18        --                                       <---------YAB1                      <-----------GT1   --------                                <------MYB46(1)                           <---------SPL7     --------                                <------MYB83                            <---------------AtSPL8     --                             <---------ANAC58                           <---------------AtSPL3     <-                             <---------ANAC58                         --------->ATHB12    -----------                        <------ZmHOX2a(2)                            <---------YAB1  ------->TEIL <--                       --------->AGP1<---------At4g35610             --------->ICU4  --------->GLK1(2)        --------->ZAT14<---------ARR14(2)                          <---------At4g35610 --------->TOE1(2) ---MYB52(1)<---------ZAT6  <---------STY1(2)                   <---------At4g35610  <---------ARR14(2) -ICU4  <---------ZAT14--------->ARR14(2)<---------GLK1(2)   <---------At4g35610     --------->ARR14(2)   cgaaggtcactctagtggtatctccgatctagcttggtcttctgattcgcattacacttgctctgcttctgatgattgtacgcttcgaatctgggacgct  1208100     ------>ZmHOX2a(1) ------>ZmHOX2a(2) ---------GLK1(1) -------->GLK1(1) ------ZmHOX2a(2)                                                                              ------ --------AGP1                                                                                  <----- --------ARR11(3)                                                                             ------- ------->ARR11(3)                                                                >>>>>>>>>ARR2<------ ->ANAC58    <---------ARR11(3)   <---------SPL7                               <---------AHL20(2) ->ANAC58  ------->TEIL           --------->TOE1(2)                    ==============================HOX2a_HOX2a ------->ARR14(2)              <-----------HVH21                       ------>ZmHOX2a(1)      ------>ZmHOX2a(2) --------ARR14(2)  <---------TOE1(3)        <---------ANAC58        ------>ZmHOX2a(1)       --------- >HVH21 <---------YAB1 <-------TEIL         <---------ANAC58        =================================HOX2a_HOX2a -------CCA1(2)    <---------TOE2(3)    ------->TEIL        <-----------GT1    <---------YAB1 <------   agatctccttatgaatgtcttaaggttcttagaggtcatacgaatttcgtcttctgtgttaatttcaatcctccttcgaatttgattgtgtctggatcgt  1208200  Previous    Next  AGI:  At4g02725.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO22536.1) Range:  from: 1206004    to: 1207436    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g02730.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61446.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit (InterPro:IPR001632); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 1207725    to: 1209287    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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