Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ARR11(3)        --------->YAB1                                   ------>NtERF2      --------->ARR14(2)                                ------->GAMYB         <---------ARR14(2)                          <---------ANAC55(2)         <---------AGP1                          --------->ANAC46      ----------->HVH21                     <---------AtLEC2 <---------ARR11(3)------>ZmHOX2a(2) <---------DAG2             <--------P   <---------ANAC58    <---------At4g35610   --------->DAG2                 --            <---------MYB52(1) --------->MYB46(3)   ------>ZmHOX2a(2)   ------->TEIL              ---           <---------DEAR3(2)  --------->DEAR3(1) <XXXXXXXXXXXXXXXXXXXXMIR842      --------->GLK1(2)         <---------LBD16  --------->ANAC55(2) --------->At4g35610  ---------->DOF2 --------->ARR14(2) -LBD16--------->ANAC46   <---------ANAC58    <---------ZAT2   <---------YAB1      <---------ARR14(2)   aggggattaacgccggtaagtttgcattgcgcaacgacgacatcttggagctgatcgatctggctatgaaaaagcaccttctgcgaatccaatagctcca  1128200                                                          --------->ANAC58                                                          --------->ANAC58                                                         <------NtERF2                                                         <---------------------WRI1                                                        <---------ATERF1(1)                                                        --------->MYB52(1)                                                        ------>NtERF2                                                       --------->At1g77200                                                       --------->DEAR3(1)                                                       --------->DREB2C(2)                                                       --------->RAP2.3(3)                                                       ----------->HVH21                                                      <------NtERF2                                                      --------->ERF1                                                      --------->RAP2.3(1)                                                      --------->RRTF1(1)                                                      --------->ATERF1(1)                                                      --------->DEAR3(2)                                                      --------->ORA47(2)                                                     <---------ATERF1(1)                                                     --------->At4g35610             --------->At4g35610                     <---------At4g35610             <---------At4g35610                     ------>NtERF2             --------->ZAT2                          <------NtERF2             <---------ZAT2                         --------->RAP2.6(2)        --------->ANAC46          --------->DEAR3(1)                        --------->ATERF1(2)        <---------ANAC55(2)         --------->ANAC46                           <---------ATERF1(2)        --------->ANAC58       <---------ALFIN1                             --------->DEAR3(1)         --------->ANAC58      <---------ZAT14           ------>ZmHOX2a(1)   <---------DEAR3(1)      --------->ARR14(2) -------->DOF2       --------->GLK1(1)             <---------RAP2.6(2)      <---------ARR14(2) ------>AHL20(2)  --------->LBD16 --------------------->WRI1              --------->AtMYB61         <   ttaaagactccaccgagctcccgatttctatctcctccttgaacgcgtccatggccgccgacggaaaactcgaagaccaatacgcaaaccgaattcaaaa  1128300                                                                                          -----------                                                                                        <---------GLK1(2)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                              --------->TOE2(3)                                                                              <---------MYB46(2)                                                                             --------->ANAC55(2)                                                                  --------->YAB1------>MYB83                                                         --------->AHL20(2)  <---------ANAC55(2)                           <------ZmHOX2a(1)          ----------->GT1        <-----------------AGL1      --------->LBD16  --------->TOE2(2)             ----------->GT1------->TEIL------>MYB46(1)  ----    <-----------RAV1(2)--------->TOE1(2)            <---------------------WRI1<---------MYB59   ----- -------TEIL--------->AHL20(2)               --------->ALFIN1    <---------ATHB12   <---------LBD16 -   tgtgcatcagggaattaaactgaaacgtaggactcagtgattcgaatgtgttgaaacgataaattcaatgaacatggttacctaatttcggattgtcaaa  1128400                                                                                          <------NtERF2    --------->GLK1(2)                                                            ----------->TBP   <---------ARR14(2)        ----------->GT1                                     <---------YAB1   <---------GLK1(2)         --------->ANAC58                   --------------->AGL15     <---------At4g35610   --------->ARR14(2)        --------->ANAC58                   <---------------AGL15 --------->ANAC46 >GT1     <--------P *TSS <------ZmHOX2a(1)       ----------->GT1    ---------->DOF2  --------->ANAC58 ----->DAG2  <---------TOE1(3)        --------->DAG2         <-----------GT1   --------->AHL20(2) ----->DOF2  <---------TOE2(3)       ---------->DOF2--------->AHL20(2) ----------->GT1--------->ANAC58 ---------------->AGL1  <---------TOE2(3)       ---------->DOF2 <----------DOF2--------->YAB1      <-   aagccgattcgggttagggtttgagtaaggaaggcaaaataaaggggcataaaagtaaataagttactttacaaagaaaaattataaaacgcagcgtctt  1128500               ----------->GT1              --------->DAG2            ---------->DOF2      ------>ZmHOX2a(2)     <------ZmHOX2a(2)                                                         <---------AHL20(2)     <<<<<<<<<GATA-1                                                          --------->AHL20(2)     <---------GLK1(1)                                                        <---------AHL20(2)     <<<<<<<<<GATA-3                                                       <---------ICU4     <<<<<<<<<GATA-2                              --------->AHL20(1)      <---------AHL20(2)     <<<<<<<<<GATA-4      <---------AHL20(2)      <---------AHL20(2)      <---------ATHB51    <---------AGP1 --------->ANAC58     <---------YAB1                    --------->ICU4    <---------ARR14(2)    --------->AHL20(1)      --------->AHL20(2)      --------->AHL20(2)    --------->ARR14(2)    <---------AHL20(1)      <---------ARR11(3)    --------->YAB1    --------->ARR11(3)    --------->AHL20(2)      <---------AHL20(1)  --------->AHL20(2)    <---------ARR11(3)   <---------AHL20(2)       --------->ARR11(3) --------->YAB1                 -   <---------CCA1(2)     --------->AHL20(2)<---------YAB1           --------->AHL20(2)            --- --------REM1(1)   --------->ANAC58    --------->AHL20(2)       --------->AHL20(2)           --------   gatgtagatctctgaaaaggtaagaaattaaatttgtttaatattatactaatatattagttgacataaaataaaaataattaaatctataagacctgaa  1128600                                               <---------ZAT18                                              --------->DEAR3(1)                                            <---------At5g28300                                           <-----------GT1                                       <----------DOF2                                    <---------ARR11(3)                                    --------->ARR11(3)                                   --------->RVE1(1)                                   <---------CCA1(1)                                   --------->CCA1(1)                                   <---------RVE1(1)                                   --------->GLK1(1)                                   <---------GLK1(1)                                  <---------ARR11(3)                                              ---                                  --------->ARR11(3)  <---------YAB1    <----------DOF2         <---- -------->YAB1                --------->LBD16--------->MYB46(3)   <---------CCA1(2)       <---------DAG2 ------>AHL20(2)              ------>ZmHOX2a(1)------>NtERF2    <---------O2              <----------DOF2 --->GT1              *TSS  ----------->RAV1(2)--------->ABI4(1)--------->O2         <-----------GT1   aataatagaatagaagagaacgagtttgtttcctgagatatcttttcaccgcccttctcataggtctcgtctctctttctctctattttacgcttttttc  1128700                                                                  --------->ARR14(2)                                                                --------->DEAR3(1)                                                         <-----------ARR10                                                        --------->ZAT2                                                        <---------At4g35610                                                     <---------ZAT2   ------>ZmHOX2a(1)                                                     --------->ZAT2<------ZmHOX2a(2)                                                     <---------At4g35610           --------->GLK1(2)     --------->GLK1(2)                               --------->At4g35610           <---------ARR14(2)    <---------GLK1(2)                            ============================HOX2a_HOX2a     <------- --->ZmHOX2a(1)    <---------GLK1(2)             ------>ZmHOX2a(2)<---------ARR14(2)        --------- -----LBD16      <---------YAB1         <----------DOF2 --------->At4g35610   <---------LBD16<-------   ctgaacgattcttagggttttgattctctctctctctcgcttctttttcgatcgcagcagctctcgccgatcctgtgtaatcgggaatcggtaatcgtca  1128800                    ------>NtERF2                   --------->ANAC58                   --------->ANAC58                  --------->ATERF1(1)                  <------NtERF2                 ------>NtERF2                 <---------ATERF1(1)                --------->DEAR3(1)                ----------->HVH21                <---------DEAR3(1)              <------ZmHOX2a(2)             <---------DEAR3(1)                --------->ARR11(3)            <-------TEIL                       <---------AGP1            --------->SPL7            <---------TOE2(3)                           <---------TOE1(2)           --------->ALFIN1           <---------TOE1(3)    <-----------GT1       <---------ANAC58         <---------ANAC58          <---------YAB1          --------->ZAT6        <---------ANAC58        <---------------AtSPL3   --------->ATHB12------>ZmHOX2a(2)        --------->ARR14(2)      ---        <---------------AtSPL8   <---------ICU4<---------ARR14(3)         <---------ARR14(2)     ----    <---------MYB52(1)          <---------YAB1 <---------ARR11(3)         <---------GLK1(2)      ---- ----HVH21<---------SPL7        --------->ICU4 <---------ARR14(2)      --------->ETT(1)          ---- >YAB1 <---------ANAC46 <----------DOF2        --------->ARR14(3)      <---------ANAC46          ---- ----TGA1<---------ANAC58    <---------YAB1    --------->ARR14(2)   <-----------RAV1(1)         -----   gggtctgtttggggtacggcgacgcgattttctgattattagggtttaagatctcgaggtatcactatttctgtcggattctcgcttgttttgttccata  1128900                                                                                          <------NtERF2                                                                                        <---------DEAR3(1)                          <---------ANAC58                                           <---------ANAC58                          <---------ANAC58                                           <---------ANAC46                         --------->ATHB12                                            --------->O2         <---------AHL20(2)<---------WOX13(1)                                        <---------O2  <-------GAMYB         <---------YAB1                                               <---------ANAC58  <---------At4g35610  <---------MYB52(1)                                            <---------bZIP60(1) -------->RAV1(1)     <-------GAMYB                                                  --------->bZIP60(1) ------->HVH21       <-----------RAV1(1)                                             <---------TGA1a ----->ANAC46   --------->YAB1                                                  <---------ZAT6 ----->ANAC58  <---------YAB1            <---------TOE1(2)       <---------PCF2<---------TOE1(3)    < ----->ANAC58 <-----------GT1       <----------DOF2         <-----------RAV1(1)<---------TOE2(3)<---- ---->SPL7   <-----------GT1<---------MYB46(3)  <---------AHL20(2)  ------>ZmHOX2a(2)--------->TGA1a<   cgacagttgatttttttatcattctgttgattgttcgtctttctaggtttttatttgaatttttgtgggatcgagattgttagggttacgtcggagtctc  1129000                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                  <---------YAB1       <---------ARR14(2)                                       <---------At4g35610          <-------       --------->ARR14(2)                                <---------ARR14(2)               --------->GLK1(2)    <---------ANAC46                                     <---------KAN4(2)           <---------ZAT18    <---------ANAC58                                     --------->ARR14(2)          --------->ZAT18    <---------ANAC58   <---------ANAC58            --------->HSFB2a(2) XXXXXXXXXXXXXXXXXXXX>MIR2112-3P ---------ANAC58       <---------ANAC55(1)  <---------WOX13(1) <---------YAB1       <---------ANAC58 -----LBD16            <---------ANAC58   --------->ATHB12 --------->KAN4(2)        <---------ANAC58 ---------ANAC58       <---------ANAC46 <---------WOX13(1)<----------TaMYB80 ------>ZmHOX2a(1)   tggattgcgtttctactgtgtaatttcgtgtttatctcatggattgattgtttctcgagtatattctgatgcttatgtcctcgtttgcgcacaatctgat  1129100  Previous    Next  AGI:  At4g02560.1    Description:  LD (LUMINIDEPENDENS); transcription factor. Identical to Homeobox protein LUMINIDEPENDENS (LD) [Arabidopsis Thaliana] (GB:Q58T20;GB:Q9C5Z9); similar to unnamed protein product [Vitis vinifera] (GB:CAO22394.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 1123490    to: 1128421    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02570.1    Description:  ATCUL1 (CULLIN 1). Identical to Cullin-1 (CUL1) [Arabidopsis Thaliana] (GB:Q94AH6;GB:O22770;GB:Q56W31); similar to CUL2 (cullin 2), ubiquitin protein ligase binding [Arabidopsis thaliana] (TAIR:AT1G02980.1); similar to cullin-like protein1 [Pisum sativum] (GB:BAC10548.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70971.1); similar to cullin 1-like protein C [Petunia inflata] (GB:ABB77428.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Cullin homology; (InterPro:IPR016158); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain C Range:  from: 1128622    to: 1133696    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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