Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->LBD16                                                                                          --------->ANAC46                                                                                          --------->LBD16                                                                                          <---------HSFB2a(2)                                                                                          --------->HSFB2a(2)                                                                                         <---------HSFB2a(2)                                                     -------->HAHB4                      <---------LBD16                           --------->TOE2(3)         <---------ICU4                      --------->HSFB2a(2)                    --------->YAB1                  --------->ICU4                  <----------DOF2                   <---------AHL20(2)               <---------YAB1                 <---------DAG2             <---------ANAC58                     --------->YAB1                 ------>NtERF2             <---------ANAC46                  --------->YAB1               <---------ANAC58          <---------MYB52(1)                 --------->LBD16                <---------ANAC58     --------->MYB52(1) <-----------GT1  --------->TCP16(1)               <---------AHL20(2) ------DOF2  <---------ANAC58            ------->TEIL--------->YAB1   <---------RVE1(1) <---------LBD16   tttgacaaaacggttgcgtttttaataaacctttgaaaaaatggacccagaataataatcggtttttgtctgatattttcttgcgccttttcccggaaaa  1122200                                                                                       ------------>CBF                                                                                      --------->ANAC58                                                                                   <---------ARR14(2)                                                   <---------bZIP60(1)     --------->LBD16                                                   --------->bZIP60(1)    --------->ANAC58                                              --------->ANAC46            --------->ANAC58                                              <---------O2                --------->ANAC46       <---                        <----------DOF2       --------->O2         --------->WRKY18(1)--------->ANAC58                       <---------ANAC58    <---------ETT(2)       <-----------HVH21<---------GLK1(2)                       <---------ANAC58    <---------WRKY12  --------->MYB52(1)    --------->ARR14(2)                       *TSS                <---------WRKY38(1)   ----------->GT1   <---------ARR11(3)             <<<<<<<<<TBF1  <XXXXXXXXXXXXXXXXXXXXXMIR833-3P  <-----------GT1     ----------->ARR10   tttctctgaaacttcttcttctctggctttttttgttcgtctcggtctacgtggcatcatgtataacgggtcaaacccgaaactagatactcaatgggcc  1122300                                                    --------->GLK1(2)                                                   <---------GLK1(2)                                              ------>MYB46(1)                                              ------>MYB83                                              -------->P                                            --------->MYB46(3)                                            --------->DEAR3(1)                                            <---------MYB59                                            ----------->HVH21                                           --------->DEAR3(2)                                 -------                                         <---------PCF5                          ------>ZmHOX2a(1)  <                                    <---------DOF5.7(2)                          >>>>>>>>>>>>>>>>>LFY                                    --------->MYB52(1)           --------->TOE2(3)            <------    <---------TOE2(3)              <---------WRKY38(1)          <---------ANAC55(2)           ------- ---NtERF2     ---------->DOF2     <---------WRKY12--------->ARR14(2)      --------->ZAT2    <-------   gagtttgatgtaattcacaaagcccaaactcatcgggttaacgggaccgacccgattctttcgaaaacgtaaaccctagcttcctccattgtcttatata  1122400                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  <--   ----------->RAV1(2)                                                                            <--   <------NtERF2                              --------->KAN4(2)                                   <--  ------>NtERF2                              <---------KAN4(1)                                    <-- <---------ATERF1(2)                         --------->KAN4(1)                                    <-- --------->ATERF1(2)                  --------->ATHB12                                           <--- --------->DEAR3(1)                   -------->HAHB4                                           <----- -->ARR11(3)                         --------->ICU4                                          <------- ---------RAP2.6(2)    <---------ATHB12      <---------ICU4                                  <------- ---AHL20(1)         --------->WOX13(1)  ------>ZmHOX2a(2)     <----------DOF2             <--------- -->AHL20(1)  <---------DAG2         <---------YAB1         <---------ARR11(3)         <----------DOF2 --CCA1(2)    <----------DOF2        <---------ATHB12---------->DOF2           <-----------GT1<------   ttgccgcctgtgattacttttctcaatcaactcattctaatgatcgattattccacaaagtagttctttcatgtttcggtttttctcttcttttttcgtt  1122500      <------MYB46(1) --------->ATHB12 --------WOX13(1) ------------->AGL15 --------------AGL15 -------ANAC58 ---------------AG -------ANAC58 -------ANAC46 ---------------AGL3 ---------------AGL2 ------MYB46(3) ----MYB52(1)                              --------->CCA1(2) --ANAC58                                 <---------ARR14(2)                         <---------TOE1(3) --ANAC58              <---------DAG2     --------->ARR11(3)              <---------RAP2.6(2) --GT1<------MYB83 ------------>CBF       <---------ARR11(3)             --------->RAP2.6(3) <------- -GAMYB       <---------MYB46(3)          --------->ARR14(2)  ------------>CBF       <---------TOE2(3)   gcttgatttggttcgatggttttcaatttttgattttctctgaagatttgaatccatttttgttttcaattcgatttcggctagattagggtttagagtg  1122600                                                                    ----------->RAV1(2)                                                                   ------>ZmHOX2a(1)                                                                 <---------HSFB2a(1)                                                                 <---------HSFC1(2)                                                                 ------>ZmHOX2a(2)                                                                 --------->HSFC1(2)                                                                 --------->HSFB2a(1)                                                                xxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->AHL20(2)                                   <------ZmHOX2a(2)        --------->ATHB12                                        xxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->YAB1                                            --------->ARR14(2)    --------->ICU4                                             ------->TEIL   *TSS<---------YAB1        <---------YAB1            <<<<<<<<<<<<<<<<<LFY  xxxxxxxxxxxxxxxx>smallRNA(si3)                      <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------YAB1>>>>>>>>>>>>>>>>>LFY  <---------ZAT14   <-----  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------------->AGL15<---------ATHB12<-----------HVH21  ------ --ZAT6--------->ICU4     <---------AHL20(2)  ----------->GT1  <---------ARR14(2)   <----------DOF2   aaggcagtgatgattaaaaactacctattttatgagtaattctctgattagaaaatttaccaatggatccttctgagccttcactgcttatttgtattca  1122700                                                                                                    <                                                                                                 <---                                                                                                 ----                                                                                                 ----                            <------MYB46(1)                                    --------->YAB1  ------                      <---------TOE2(3)                                       <---------YAB1   <-----                      <---------TOE1(3)    <---------YAB1                   --------->YAB1  <--------             --------->LBD16<------MYB83   <---------TOE1(3)              xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->HSFB2a(2)    <---------At5g28300                    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------HSFB2a(2)   <-----------GT1 ----------->TGA1        xxxxxxxxxxxxxxxx>smallRNA(si3) ------GT1 <---------LBD16 <---------AtMYB61  <---------WOX13(1)          xxxxxxxxxxxxxxxx>smallRNA(le3) --->YAB1 <---------LBD16  --------->MYB59 <---------TOE2(3)---------->DOF2--------->ICU4  <---------LBD16   caattcagttttctcgggaaaattagggtttggtttttactgtttaagattgatgacgatgagaaagagccgatggaatgatgataacgatttttcggat  1122800      <---------AHL20(2)     --------->AHL20(1)     <---------AHL20(1)     --------->AHL20(2)     <---------AHL20(2)  <---------AHL20(2)  --------->AHL20(2) --------->AHL20(2) <---------AHL20(2) ---------AHL20(2)                                                                   <-----------GT1 ------ARR11(3)                                                                    <---------AHL20(2) ----->AHL20(1)                                                                    --------->AHL20(2) ----->ARR11(3)   --------->AtMYB61                   <----------DOF2             --------->YAB1 --->ARR14(2) --------->WRKY38(1)              <---------WOX13(1)           --------->TOE2(3)       < ----ARR14(2) <---------ETT(2)               --------->ATHB12             <---------YAB1   <--------- -ANAC46      --------->ETT(2)        --------->At4g35610              <---------MYB52(1)  <---------   atattaatttattctgtcgaccaaaactcagactacaattatctgactaattggctctttctctcattaatctgttattcttaattttaatcttctgttt  1122900           <---------ICU4           --------->YAB1          --------->ICU4   ------>ZmHOX2a(2)  <---------GLK1(1)  --------->GLK1(1) <---------ARR11(3)                                                                   --------->DEAR3(1) <---------AGP1                                                                     <---------At5g28300 --------->ARR11(3)                                                             --------->WOX13(1) ---------CCA1(2)        --------->ATHB12                               --------->ZAT14 --------AGL3          <---------WOX13(1)                               <---------ZAT14 --------AGL2<---------YAB1                            <---------YAB1   --------->ZAT18   ttggatctcttaattatgttttttgaatgatttggctaatacaagtttgaacgacttatgaacgatttatgaagagcactgtctatcaccgtcttaattt  1123000                      <---------bZIP60(2)                      <---------ANAC46                   ----------->TGA1                   ----------->HVH21                                                       <---------YAB1                 <------MYB46(1)                                                           <---------ATHB12                 <------MYB83            --------->YAB1                                   ------>MYB83                 <---------ANAC58 >>>>>>>>>GATA-4                               <---------YAB1                 <---------ANAC58 >>>>>>>>>GATA-1                             --------->AHL20(2)                <---------DEAR3(1)>>>>>>>>>GATA-3                            --------->AHL20(2)                --------->MYB46(2)<---------ARR14(2)              ---------->DOF2    <-----------GT1    <---------At4g35610           >>>>>>>>>GATA-2       <---------YAB1       <---------AHL20(2)     -    --------->At4g35610      <---------ANAC46    <---------At5g28300       --------->YAB1 ------>MYB46(1)   agagactgcttacttagttcggtgacgagtaatgtggattcaataaacattcacagttatgaaattagaaaagacataaataatttttgacctatcattt  1123100  Previous    Next  AGI:  At4g02550.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64592.1) Range:  from: 1120421    to: 1122223    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02555.1    Description:  snoRNA. snoRNA Range:  from: 1122603    to: 1122678    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version