Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->GLK1(1)                                                              <---------GLK1(1)                                                             --------->ARR14(2)                                                             --------->ARR11(3)                   <--                                                             <---------ARR11(3)                   ---                                                             <---------GLK1(2)                   <---                                                 <---------CCA1(2)        --------->ARR11(3)     ----                                        <---------MYB59      <---------ARR14(2)                  <---          ------->TEIL                  --------->AtMYB61  --------->LBD16<---------ARR11(3)<--------       --------->ANAC46             <---------ETT(2)      <---------HSFB2a(2)         --------->MYB52(1)     --------->MYB52(1)             --------->ETT(2)      --------->HSFB2a(2)       <---------MYB52(2)   cacaaataaacgaagctctataccattttcaaaatcgatcgacctaaactcgtctctcttccagatattcgaagaagagctctgaaactaacttagctaa  1121800                                                                                                   --                                                                                                  ---                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                            =========                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                           ==========                                                      --------->TOE1(3)                   --------->ARR14(2)                                                      --------->TOE2(3)                   <---------ARR14(2)        ---------->DOF2                            <---------CCA1(2)                     <---------At4g35610 -------ICU4                                      <---------ARR14(2)           <---------DEAR3(1)<--- ------>ATHB12         --------->ZAT2             --------->ARR14(2)         --------->MYB52(1)<----- ------ATHB12          <---------At4g35610     <---------ANAC58             ----------->HVH21 ------- ----->ICU4            --------->At4g35610     <---------ANAC55(2)         <---------WOX13(1)<------- ------YAB1 --------->ARR11(3)                 <---------ANAC46  --------->ANAC58  <---------MYB46(3) -At4g35610 <---------ARR11(3)                 <---------ANAC58  --------->ANAC58--------->At5g28300   tgatttttaaaaaagaactcaaatcagctctcagtagtagaaatcaaatgcgtataccttcacagaaacgaaatcagattgacggtgattcagatcgccg  1121900    ------->TEIL   --------->MYB52(1) ------->At4g35610 ------>DEAR3(1) -----ATERF1(1) ---->ABI4(1) ->NtERF2 ---->LBD16 --->DEAR3(1) ----ATERF1(2) --->ATERF1(2) --->RAP2.3(2) --->RAP2.3(3) -->RAP2.3(1) -->ORA47(2) -->ERF1   ----------->GT1                                                   <----------DOF2 -->ATERF1(1)                                                       <------MYB46(1)               --- ================HOX2a_HOX2a                                       <---------AtMYB61     <---------ANAC58 ================HOX2a_HOX2a                                  <---------TOE2(3)          <---------ANAC58 ---NtERF2<------ZmHOX2a(1)  --------->ALFIN1  <------ZmHOX2a(1)   --------->MYB59       <---------ANAC46 ----DEAR3(1)       --------->ALFIN1   ----------------->AGL1 <---------TOE1(3)<---------CCA1(2)<---- -->DEAR4(2)     --------->DAG2     <---------GLK1(1)     <----------DOF2    <---------DAG2     ----- --ATERF1(1)    ---------->DOF2 ----------->RAV1(1)--------->GLK1(2)<------MYB83  --------->TOE2(3)   ccgatgaacggaggagtcaaaagtggtggaagtgcgacatttccgataaggagaagctcgatttagggtttggtttcccctttatcttatttcgtatgga  1122000                           --------->ARR11(3)                           <---------ARR11(3)                          --------->CCA1(1)      --------->ALFIN1    --------->RVE1(1)    <---------ANAC46<---------HSFC1(1)                      --------->GLK1(1)   <------ZmHOX2a(1)<---------HSFB2a(2)                 --------->LBD16                         <---- --->ZmHOX2a(2)     --------->HSFB2a(2)                --------->LBD16  <------NtERF2     <---------ICU4 -----ARR14(2)      --------->HSFC1(1)                --------->HSFB2a(2)                <---------YAB1 ---->ARR14(2) <----------DOF2                        <---------HSFB2a(2)             <---------YAB1   tcggaggagtgtttcttcttttctcgaaatatctctctctctctgagtacttgtttcccgagaaacccagagtcgtcgaagaagttttctcattatcgct  1122100                                                                                           --------->LBD16                                                                                          --------->HSFB2a(2)                                                                                          --------->LBD16                                                                                          --------->ANAC46                                                                                          <---------HSFB2a(2)                                                                                         --------->HSFB2a(2)                                                     -------->HAHB4                      <---------HSFB2a(2)                           --------->TOE2(3)         <---------ICU4                      <---------LBD16                    --------->YAB1                  <---------YAB1                  <----------DOF2                   <---------AHL20(2)               --------->ICU4                 <---------DAG2             <---------ANAC46                     --------->YAB1                 ------>NtERF2             <---------ANAC58                  --------->YAB1               <---------ANAC58          <---------MYB52(1)                 --------->LBD16                <---------ANAC58     --------->MYB52(1) <-----------GT1  --------->TCP16(1)               <---------AHL20(2) ------DOF2  <---------ANAC58            ------->TEIL--------->YAB1   <---------RVE1(1) <---------LBD16   tttgacaaaacggttgcgtttttaataaacctttgaaaaaatggacccagaataataatcggtttttgtctgatattttcttgcgccttttcccggaaaa  1122200                                                                                       ------------>CBF                                                                                      --------->ANAC58                                                                                   <---------GLK1(2)                                                   --------->bZIP60(1)     --------->LBD16                                                   <---------bZIP60(1)    --------->ANAC46                                              <---------O2                --------->ANAC58                                              --------->O2                --------->ANAC58       <---                        <----------DOF2       --------->ANAC46     --------->WRKY18(1)--------->ANAC58                       <---------ANAC58    <---------ETT(2)       <-----------HVH21<---------ARR14(2)                       <---------ANAC58    <---------WRKY12  <-----------GT1       --------->ARR14(2)                       *TSS                <---------WRKY38(1)   ----------->GT1   <---------ARR11(3)             <<<<<<<<<TBF1  <XXXXXXXXXXXXXXXXXXXXXMIR833-3P  --------->MYB52(1)  ----------->ARR10   tttctctgaaacttcttcttctctggctttttttgttcgtctcggtctacgtggcatcatgtataacgggtcaaacccgaaactagatactcaatgggcc  1122300                                                    --------->GLK1(2)                                                   --------->ARR14(2)                                              ------>MYB83                                              -------->P                                              ------>MYB46(1)                                            --------->MYB46(3)                                            <---------MYB59                                            ----------->HVH21                                            --------->DEAR3(1)                                           --------->DEAR3(2)                                 -------                                         <---------PCF5                          ------>ZmHOX2a(1)  <                                    <---------DOF5.7(2)                          >>>>>>>>>>>>>>>>>LFY                                    --------->MYB52(1)           --------->TOE2(3)            <------    <---------TOE2(3)              <---------WRKY38(1)          <---------ANAC55(2)           ------- ---NtERF2     ---------->DOF2     <---------WRKY12<---------GLK1(2)       --------->ZAT2    <-------   gagtttgatgtaattcacaaagcccaaactcatcgggttaacgggaccgacccgattctttcgaaaacgtaaaccctagcttcctccattgtcttatata  1122400                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  <--   <------NtERF2                                                                                  <--   ----------->RAV1(2)                        --------->KAN4(2)                                   <--  ------>NtERF2                              <---------ICU4                                       <-- --------->ATERF1(2)                         <---------KAN4(1)                                    <-- --------->DEAR3(1)                   --------->ATHB12                                           <--- <---------ATERF1(2)                  -------->HAHB4                                           <----- -->ARR11(3)                         <---------ATHB12                                        <------- ---------RAP2.6(2)    <---------ATHB12      --------->KAN4(1)                               <------- ---AHL20(1)         --------->WOX13(1)  ------>ZmHOX2a(2)     <----------DOF2             <--------- -->AHL20(1)  <----------DOF2        <---------YAB1         <---------ARR11(3)         <----------DOF2 --CCA1(2)    <---------DAG2         --------->ICU4  ---------->DOF2           <-----------GT1<------   ttgccgcctgtgattacttttctcaatcaactcattctaatgatcgattattccacaaagtagttctttcatgtttcggtttttctcttcttttttcgtt  1122500      <------MYB46(1) --------->ATHB12 ------------->AGL15 --------WOX13(1) --------------AGL15 -------ANAC58 -------ANAC46 ---------------AGL2 -------ANAC58 ---------------AG ---------------AGL3 ------MYB46(3) ----MYB52(1)                              --------->CCA1(2) --ANAC58                                 <---------ARR14(2)                         <---------TOE2(3) --ANAC58              <---------DAG2     --------->ARR14(2)              <---------RAP2.6(2) --GT1<------MYB83 ------------>CBF       --------->ARR11(3)             --------->RAP2.6(3) <------- -GAMYB       <---------MYB46(3)          <---------ARR11(3)  ------------>CBF       <---------TOE1(3)   gcttgatttggttcgatggttttcaatttttgattttctctgaagatttgaatccatttttgttttcaattcgatttcggctagattagggtttagagtg  1122600                                                                    ----------->RAV1(2)                                                                   ------>ZmHOX2a(1)                                                                 --------->HSFC1(2)                                                                 --------->HSFB2a(1)                                                                 <---------HSFC1(2)                                                                 ------>ZmHOX2a(2)                                                                 <---------HSFB2a(1)                                                                <------ZmHOX2a(2)           --------->AHL20(2)                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ATHB12                                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->YAB1                                            <---------ARR14(2)    --------->ICU4                                             ------->TEIL   *TSS<---------YAB1        <---------YAB1            >>>>>>>>>>>>>>>>>LFY  xxxxxxxxxxxxxxxx>smallRNA(si3)                      <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------YAB1<<<<<<<<<<<<<<<<<LFY  <---------ZAT14   <-----  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------------->AGL15<---------ATHB12<-----------HVH21  ------ --ZAT6--------->ICU4     <---------AHL20(2)  ----------->GT1  --------->ARR14(2)   <----------DOF2   aaggcagtgatgattaaaaactacctattttatgagtaattctctgattagaaaatttaccaatggatccttctgagccttcactgcttatttgtattca  1122700  Previous    Next  AGI:  At4g02550.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64592.1) Range:  from: 1120421    to: 1122223    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02555.1    Description:  snoRNA. snoRNA Range:  from: 1122603    to: 1122678    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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