Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->GLK1(1)                                                                            <---------GLK1(1)                                                                        <---------ANAC46                         --------->TOE2(3)                             <------MYB83                        --------->YAB1                                 <------MYB46(1)                --------->GLK1(2)                                    <--------P                --------->GLK1(1)--------->ARR11(3)                 <---------ANAC58                --------->ARR14(2)          --------->ARR14(2)      <---------ANAC58        <--------               <---------GLK1(2) <---------ARR11(3)       --------->TOE1(3)--------->ARR14(2)      --            --------->YAB1   ---------->DOF2--------->GLK1(2)      --------->ATHB12--------->MYB46(3)   ----------->GT1     <---------ATHB12     <---------ARR14(2)     <---------MYB46(3) --------->MYB46(3)  <----------ID1<---------ARR14(2)   <---------LBD16      --------->TOE2(3)<---------ARR14(2) -------   caatagggcaaaaatcagaatcccaaacatcaaaagttcttcggagaatttggacacaaaccttgaaattggttggggaaatgccacaaccattgtcaat  1080300                                                          <------NtERF2                                                         ------>NtERF2                                                        <---------DEAR3(1)                                                        <---------ANAC46                                                        --------->DEAR3(1)                                                       --------->RAP2.3(1)                                                      <---------RAP2.3(1)                                                      --------->LBD16                                                      ------>NtERF2                                                      <---------ATERF1(1)                                                     <---------DEAR3(1)                                                     <---------ATERF1(2)                                                     --------->RAP2.3(3)                                                     --------->RAP2.3(2)                                                     --------->ATERF1(2)                                                     --------->DEAR3(1)                                                    <---------LBD16                                                    --------->DEAR4(2)                                                    --------->RRTF1(1)                                                    --------->ERF1                                                    --------->RAP2.3(1)                                                    --------->ORA47(2)                                                    --------->DEAR3(2)                                                    --------->RAP2.6(1)                                                    --------->ATERF1(1)                                                    <------NtERF2                                                   <---------ATERF1(1)                                                   ------>NtERF2                                                   <---------RAP2.6(1)                                                   <---------RRTF1(1)                                                   <---------ERF1                                                   <---------RAP2.3(1)                                                  --------->TCP20                                                  <---------DEAR3(1)                                                  --------->TCP16(1)                                                  <---------RAP2.3(2)                                                  <---------RRTF1(2)                                                  <---------PCF2                                                  <---------ANAC46                                                  <---------RAP2.3(3)                                                 --------->RAP2.3(1)                                                 --------->ATERF1(1)                                                 <---------ABI4(2)                     ------>NtERF2                                                 <------NtERF2                         <---------SPL7                                                <---------ERF1                        <---------ATERF1(2)                                                <---------ATERF1(1)                   <---------RAP2.6(2)                                                <---------RAP2.3(1)                  --------->RAP2.6(3)                             <---------MYB46(3)<---------DEAR3(1)                   <---------WRKY18(1)                             ----------->GT1<-----------RAV1(1)                    --------->WRKY12 ----------->GT1            <---------TOE1(2)  <---------RAP2.3(3)                 ----------->HVH21 -YAB1                      <---------TOE2(2)  --------->ALFIN1             --------->ANAC58 ------->At4g35610      <---------LBD16 --------->ZAT14--------->ATERF1(1)  --------->ANAC58 -->WOX13(1)     --------->DEAR3(1)     <---------ZAT14<------NtERF2  <---------HSFB2a(2)  <------NtERF2   gacctgaaaatagtcttcgccgtagtctcggaggttaatctctatactggtggcgccggcgtcgagactattctcgacaagctccttgacggccgaagag  1080400                         --------->GLK1(2)                        <---------ARR14(2)----------------->AGL3                 --------->LBD16     <---------ANAC55(1)               <---------LBD16       <---------ANAC58             <---------WRKY18(1)     --------->ANAC55(2)            ----------->HVH21        <---------ANAC55(2)    ---------->DOF2                    ------            --------->WRKY12         <---------ANAC58     <---------YAB1                      <------            --------->WRKY38(1)    <-----------GT1  --------->ARR11(3)             ----------->HVH21          <---------ANAC58  ----------->GT1--------------->AGL15                  <------NtERF2------          <---------ANAC58  <---------ANAC46        <---------ARR11(3)          <---------DEAR3(1)     --------->At4g35610--------->ARR14(2)<-----------------AGL3               <------NtERF2---------     <---------At4g35610<---------GLK1(2) <-----------------AGL2              <-----------HVH21<-----   aggtctaagatgacttgaccggaacagattctgtgaattacgtttctgtttataggtcttatcaaaggagagctagtagtcgtcggagacggagaagaat  1080500                                                              <---------LBD16                                                           --------->ZAT14                                                           --------->SPL7                                                           <---------ZAT14                                                         <---------ZAT18                                                         <---------ZAT14                                                         <---------SPL7 --->ARR14(2)                                        <---------ALFIN1 ---GLK1(2)                          ------>ZmHOX2a(1)   --------->ZAT14 --->GLK1(2)                        --------->TOE2(3)--------->AtMYB61 -->ARR10                      ------->TEIL          --------->DEAR3(1) ------ARR10              --------->At4g35610     --------->ANAC46     <---------ANAC46   ctccttgcatttgctaaaccctataaacagatgaatctcctcaatcgaatcaacaccaccgtactctgggactgtgtgtgtgagaagagagagagagagt  1080600                           <------NtERF2                          <---------RAP2.6(3)                              <----------DOF2                          ------>NtERF2                                   <---------ANAC58                          --------->LBD16                                 <---------ANAC46                         <---------ATERF1(2)                             ---------->ID1                         --------->RAP2.6(2)                       --------->HSFC1(2)                         --------->ATERF1(2)            >>>>>>>>>TBF1<----------DOF2                        <---------RAP2.6(2)    --------->ANAC58    <---------HSFC1(2)               -        --------->STY1(1)--------->DEAR3(1)    --------->ANAC58   ------->TEIL      --------->GLK1(1)       <---------MYB52(1)--------->ANAC46 <----------ARF1   <----------ID1<---------ANAC58          <   gagaaaacccttagggtttatgttttgccgccaaaatcgaaggtgagacaaggatgaagaagaagacgaagcttttgcgttttgggagttcgaagagttt  1080700            <---------At4g35610            <---------ZAT2            --------->At4g35610            --------->ZAT2           ------->TEIL          <-----------RAV1(2)      <---------ANAC46                            ---------->DOF2        --------->ANAC58           <---------ANAC58                         --------->CCA1(2)        --------->ANAC58           <---------ANAC58                        <---------ARR11(3)   <----     ----------->HVH21        <---------ANAC58                           <---------TOE2(3)  --------- -------->ZAT6 --------->ZAT18<---------ANAC58            <---------TOE2(3)--------->ARR11(3)  ------ ---------ALFIN1      *TSS    <---------ANAC46  <------------CBF    ------->TEIL            <--------   caacactgggacgcagctgcacaatgcgatttgcgtttcgcgtttgaacaaattgaatttgatgttaatggacttaagatttaaagcccatattagctca  1080800                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                          --------->ANAC55(2)                                                          <---------ANAC55(2)                                                          --------->ANAC55(1)                            ----------->HVH21             --------->ANAC58                            <---------YAB1                --------->ANAC58                         <---------MYB52(1)               --------->O2 --------CBF            <-------GAMYB                     --------->ANAC46 >At4g35610  <---------ARR11(3)                           <---------bZIP60(1) --->ATHB12  <---------AHL20(1)          --------->ANAC46 --------->bZIP60(1)            ----------->GT1 -At4g35610  --------->AHL20(1)  --------->At4g35610  <-----------HVH21      ---------->DOF2    <<<<<   ttgggcttagaccaaaatattctgcccgttatgacagatgtacaagtagccgcttgggtcacgtaatagattttagggctaaagtcaagtagggtttctt  1080900                                                                                --------->DAG2                                                                               ---------->DOF2                                                                            --------->ANAC58                                                                            <---------ANAC55(2)              <---------ANAC58                                              ----------->GT1         <              <---------ANAC58                                      <---------ANAC46             <---     ----------->GT1 ------------>CBF                  ------------>CBF  <---------ARR14(2)<--------- <<<<TBF1 <------------CBF                            >>>>>>>>>>>>>>>>>LFY  --------->ANAC58<------NtERF2   cttcatatgctaaattgcgttccctcaatctcacatagtctctacttcttgactatatccaatggcgattaagtggaaacgtaaagctattcgcgtcgta  1081000             <------MYB83             <------MYB46(1)       <---------LBD16       <-----------RAV1(2)      ------>ZmHOX2a(1)                      --------->ARR11(3)                                     -   ------>ZmHOX2a(1)                         <---------ARR11(3)                                 -----  <---------ALFIN1                           <---------GLK1(2)                             --------->MYB52(1) ---------ATERF1(1) ----------->GT1 <----------DOF2                                      <---------MYB52(2) ------ATERF1(1) --------->ALFIN1  --------->TOE2(3)                              ----------->GT1   - --HVH21  <------ZmHOX2a(1)     <-----------GT1         --------->ATHB12        <---------GLK1(1)  --   gcctcctcctcaggaaggtgagtgggaaattttaaaacctttttgtagattttggaattgatagggtttctaaattctatggatttgtgaaactaacgcc  1081100     ------>ZmHOX2a(1)    --------->TOE1(3)    --------->TOE2(3)   ------>ZmHOX2a(2)                                                                                -  <------ZmHOX2a(2)                                                                                 < <---------ARR14(3)                                                                                <- <---------ARR11(3)                                                                               --- --------->ARR14(2)                                                                           ------- <---------ARR14(2)                                                                          <------- --------->ARR11(3)                                                                      <---------RVE1(1) --------->ARR14(3)                                       --------->ICU4                 <---------CCA1(1) -------->HSFB2a(1)                                      <---------------AGL15          <---------ARR11(3) ---->DEAR3(1)                                           <----------DOF2                <---------ARR14(2) -------->GLK1(1)      ----------->RAV1(1)        --------->ATHB12                      --------->ARR11(3) --------->ARR10     --------->At4g35610         <---------ATHB12              --------->ATHB12 <----   gaagatccttaagctagcctatgagcagcaaatagaagtcagaaaatcccaatgactgcctttattaagaaggcagtgtatggattggaagatatttgat  1081200  Previous    Next  AGI:  At4g02460.1    Description:  DNA mismatch repair protein, putative. similar to ATMLH1 (ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1) [Arabidopsis thaliana] (TAIR:AT4G09140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39991.1); similar to Os02g0592300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047292.1); contains InterPro domain DNA mismatch repair protein, C-terminal; (InterPro:IPR013507); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain MutL, C-terminal, dimerisation (InterPro:IPR014790); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro doma Range:  from: 1076136    to: 1080722    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02465.1    Description:  unknown protein Range:  from: 1080962    to: 1081680    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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