Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ARR11(3)                --------->ARR11(3)               <---------GLK1(1)        --------->ANAC58   <---------HSFB2a(2)   --------->HSFB2a(2)                                                    <---------ALFIN1  ------>ZmHOX2a(2)                                                   --------->At4g35610 <------ZmHOX2a(2)                                                    <---------At4g35610 ---------ARR14(2)                                                  --------->MYB46(3) -------->ARR11(3)                                                --------->MYB52(1) -------->ARR14(2)  ----------->RAV1(2)                           ----------->RAV1(1)          ------ ->ARR14(2)    --------->GLK1(1)                               --------->ANAC58                ------ --ARR14(2) --------->ANAC46                                   --------->ANAC58           --------->ANAC58 ---DOF2--------->ANAC58 <-------GAMYB                    --------->At4g35610             --------->ANAC58 ------AGL1 --------->ANAC58                   <<<<<<<<<TBF1   --------->ANAC46       --------->DEAR3(1) ------AGL2 --------->ANAC58          --------->ANAC46    <---------At4g35610      <---------ALFIN1 ------AG--------->TOE1(2)<--------P<---------ALFIN1     --------->DEAR3(1)        <xxxxxxxxxxxxxxxxx   gggatctggaacccaagaaatcttctgggttgattcttccactcccttcttcttcatcacagccgaagcaacagctccacttcttccaccgctcgaaacg  1046600                  --------->LBD16                 --------->RAP2.6(2)                <---------RAP2.6(2)             --------->ATERF1(1)             --------->ALFIN1            <-----------HVH21           <---------O2           --------->O2           <---------ANAC46           =============================MYC_MYB           --------->DEAR3(1)          --------->ATERF1(1)          <------NtERF2         ------>NtERF2         --------->ABI4(1)        <---------DEAR3(1)        --------->DEAR3(1)        --------->RAP2.3(2)        --------->RRTF1(3)        --------->RAP2.3(3)        --------->RRTF1(2)       --------->ORA47(2)       --------->ERF1             <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->DEAR3(2)       <-------GAMYB       --------->DEAR4(2)  --------->ANAC58       --------->RRTF1(1)  --------->bZIP60(2)       <------NtERF2  --------->ARR14(2)       --------->ATERF1(1) --------->O2       --------->RAP2.6(1) <---------O2       --------->RAP2.3(1) <---------TGA1a                 ----------->GT1      <---------ATERF1(1)  --------->TGA1a              <---------MYB52(1)      <---------RAP2.3(1)  =============MYC_MYB     ------>NtERF2      ------>NtERF2   <---------ARR14(2)        --------->ANAC46      <---------RRTF1(1) <---------ALFIN1       --------->ANAC58                   --------->ANAC58 --->ANAC58<---------TGA1a --------->ANAC46     --------->ANAC58                   --------->ANAC58 --->ANAC58--------->TGA1a --------->ANAC58   --------->MYB52(1)  --------->MYB52(1)      --------->MYB52(1) xxxxsmallRNA(fl3)<------NtERF2<---------MYB46(3)  <---------ALFIN1                --------->ANAC46 -   ctcccttgcgccgccgtggccgcataaccacgtctgttatcacacaaaaaacgacaccgtttagaaaaaaacagagcataactacaagaaaaaaacagag  1046700                                                                                   --------->TOE2(3)                                                                                   --------->TOE1(3)                                                                                 <---------TOE2(3)                                                                           <---------ARR11(3)                                                                           --------->ARR11(3)                                                                        <-------TEIL                                                                       --------->ARR14(1)                                                                       --------->CCA1(2)                                                                      --------->ARR11(1)                                                               ---------->DOF2   <---------TOE1(3)                               --------->LBD16               --------->ANAC58--------->YAB1                              --------->HSFB2a(2)            --------->ANAC58------>ZmHOX2a(2)                              <---------HSFB2a(2)          --------->CCA1(2)<------ZmHOX2a(2)     ---  ----------->GT1            <---------LBD16          --------->ANAC46--------->ARR14(2)          --- --------->DAG2             --------->MYB52(1)     <---------ZAT14    <---------ARR14(2)          --- --------->DOF2             -------->P             --------->ZAT18  ----------->ARR10   <---------ZAT6   cataaagtagaaaacagaacaatagagacttaccggaagatagcattggagagttcacgagagacgaaagcagatacgatcttaacgttagagatagaac  1046800                                                                           <------NtERF2                                                                           <-----------RAV1(2)                                                                          ------>NtERF2                                                                          <---------At4g35610                                                                          --------->LBD16                                                                          <------NtERF2                                                                          --------->At4g35610                                                                         --------->DEAR3(1)                                                                         --------->RRTF1(2)                                                                         --------->RAP2.3(2)                                                                        --------->RAP2.6(1)                                                                        --------->RAP2.3(1)                                                                        --------->RRTF1(1)                                                                        --------->ATERF1(1)                                                                        <------NtERF2                                                                       --------->ABI4(1)                                                                       ------>NtERF2                                                                       <---------ATERF1(1)                                                                      --------->ATERF1(2)                                                                      --------->RAP2.3(2)                                                                      --------->RAP2.3(3)                                                                      --------->ANAC46                                                                      <---------ATERF1(2)                                                                      <---------DEAR3(1)                                                                      --------->DEAR3(1)                                                                     <------NtERF2                                                                     --------->ATERF1(1)                                                                     --------->RAP2.6(1)                                                                     --------->ORA47(2)                                                                     --------->RAP2.3(1)                                                                     --------->ERF1                                                                     --------->RRTF1(1)                                                                     --------->DEAR4(2)                                                                    <---------RAP2.3(1)                                                                    <---------ATERF1(1)          <---                                                                    <---------RRTF1(1)        -------                                                                    ------>NtERF2         <---------ARR14(2)                               ----------->GT1                     <---------DEAR3(1)  --------->CCA1(2)                           ---------->DOF2                       <-----------HVH21    <---------ARR11(3)                          XXXXXXXXXXXXXXXXXXXXX>MIR2936   <---------At4g35610    <------ZmHOX2a(1) ------>ANAC46        <---------ANAC46                  <---------CCA1(2)----------->RAV1(1)  <------ ------>ANAC58        <---------ANAC58            <---------YAB1<-----------RAV1(1)   --------->ARR11(3) ------>ANAC58        <---------ANAC58      <----------DOF2     =======================RAV--------->ARR14(2)   gagccattttcgaagtaagtggtttcttgaaaagagagaaaacagactttttattcttgtagcttcttgtcgccgccgcagaaggagagatatatccgag  1046900                  <------NtERF2                 ------>NtERF2                 --------->LBD16        <---------YAB1     --------->ICU4 ---ZmHOX2a(1)   --------->RAP2.6(2)   <------MYB46(1) -->LBD16      <---------LBD16         <------MYB83--------->ZAT14  <----------DOF2              *TSS ---LBD16--------->YAB1          ---------->DOF2<XXXXXXXXXXXXXXXXXXXXXMIR2936           --------->CCA1(2)   gaatgagataattatactgcggcaacgagattgaagaaagttggtatcgtctgtgttctctctctcaaggctttcgaaaatggtttgaagagatgagaag  1047000                                                                                                   <-                                                                                                  <--               <------MYB46(1)                             ----------->HVH21                     <---               <------MYB83                          <---------TOE2(3)                        -------               ----------->GT1                     ---------->DOF2          <---------At4g35610 <----            <------ZmHOX2a(1)                      --------->MYB52(1)       --------->At4g35610<-----       <------ZmHOX2a(1)  <------ZmHOX2a(1)   <------ZmHOX2a(1)      <------------CBF     --------->MYB52(1) <------ZmHOX2a(1) <-----------TBP           ----------->GT1      --------->LBD16     --------->YAB1   agaggaagaggagaggaaggtttatataggagagagtgaaggaagagaggaaataaaggaagtgactccgaaattgtcttctcacttctcataaacggct  1047100                                           <---------DAG2                                           <----------DOF2                                          <---------ANAC58                                          <---------ANAC58       --------->ICU4                                      <----------DOF2     ---------->DOF2                               --------->ATHB51          --------->AHL20(2) ----------HVH21               <---------ICU4            <---------AHL20(2) -------ANAC46                 <--------HAHB4           <---------YAB1 ---NtERF2  <----------DOF2   <---------ATHB12       <---------AHL20(2) -->At4g35610                 --------->ICU4         --------->AHL20(2)                 --------->AHL20(2) -----ATERF1(1)            ----------------->AGL2    <---------YAB1       <---------DAG2<---------AHL20(2) ----DEAR3(1)              ----------------->AGL3--------->AHL20(2)       <----------DOF2          --   gcgtcaattctggcctttgagtcttttgacccataattagctttgctttttttatataattaaagtcaaaattggactttttttttttgtttaaatatag  1047200                                                                  <---------AHL20(2)                                                                 --------->AHL20(2)                                                                 <---------AHL20(2)     --------->AHL20(2)                                       <--------ATHB1     <---------AHL20(2)                                       --------->ATHB12 --------->ARR11(3)              <---------TOE2(3)           --------->ICU4 <---------ARR11(3)            <---------AHL20(2)            <---------ATHB12                  <----- --------->ARR10         ----------->GT1             --------->AHL20(2)             <----------DOF2   ttagattttaaatgtgtgatttacaaggggaaattaatgttttatgtcaaacaaaaaaaatcaatgatttatttgaaaaatgcaaactttcagagttatt  1047300                                                          --------->AHL20(2)                                               --------->AHL20(2)                                               <---------AHL20(2)                     --------->AHL20(1)    <---------AHL20(2)                     <---------AHL20(1)--------->AHL20(2) <---------AHL20(2)                  --------->AHL20(2)  <---------YAB1     --------->AHL20(2)    <---------ARR11(3)      --------------->AtSPL8 --------->HSFB2a(2)      <---------AHL20(2)    <---------AHL20(1)    <-----------GT1  --------->AHL20(2)            ----------->GT1    --------->AHL20(1)  <---------AHL20(2)--------->AHL20(2)            --------->DAG2 ----YAB1         --------->YAB1  <----------DOF2  <---------HSFB2a(2) ---------->DOF2   atccaatatttttagttgaataatattttttctgttctttattatttaattttttagaaaaaaatttgtttcaaaaagttaatttttaaaaagtttttat  1047400                                             --------->ATHB51                                             <--------ATHB1                                        <-               --------->ATHB12              --------->ATHB12                                      --               --------->ATHB51              <---------ICU4                                        --              <---------YAB1                 -------->HAHB4                  --------->AHL20(2)    <-              --------->ICU4                --------->AHL20(2)   <---------TOE2(3)              -----     <---------AHL20(2)                     <---------AHL20(2)   <---------TOE1(3)--------->AHL20(2)<     --------->ATHB12                       <---------ATHB51    ---------->DOF2  --------->AHL20(2)<-    <---------AHL20(2)               <---------YAB1      <---------YAB1    <---------AHL20(2)  ------    --------->AHL20(2)               <---------TOE2(3)<---------YAB1   <---------YAB1          <----- --------->AHL20(2)                  <---------TOE1(3)<---------AHL20(2)   --------->AHL20(2) ------- --------->ATHB51  --------->YAB1<----------DOF2--------->AHL20(2)----------->GT1<---------AHL20(2)--   gcattatttattagttattattgataatttgtaaactttaagataaataattgaatattattagtttaaagttataaaaaaatataaattacaaaaatta  1047500  Previous    Next  AGI:  At4g02380.1    Description:  SAG21 (SENESCENCE-ASSOCIATED GENE 21). similar to late embryogenesis abundant 3 family protein / LEA3 family protein [Arabidopsis thaliana] (TAIR:AT1G02820.1); similar to protein induced upon tuberization [Solanum demissum] (GB:CAA66948.1); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926) Range:  from: 1046204    to: 1046997    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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