Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                          <xxxxxxxxxx                                                                                         ============                                                                                         ============                                                                                       <---------ALFIN1                             <---------ARR14(2)                                       --------->LBD16                             --------->ARR14(2)                                      --------->ANAC58                        --------->ANAC58                 <---------MYB52(1)          --------->LBD16                        --------->ANAC58                <---------SPL7               --------->ANAC58                       --------->SPL7         <-----------GT1             =========================bZIP_DOF                       <-------TEIL        <---------GLK1(1)      --------->ANAC58   --------->ANAC46                       ------->TEIL        --------->GLK1(1)      --------->ANAC58  <---------HSFB2a(2)                     --------->TOE2(2)    --------->ARR11(3)   --------->ALFIN1     --------->HSFB2a(2)                     <---------SPL7  --------->AtLEC2 <---------TOE1(2)   <----------DOF2--------->TGA1a ------>RAV1(1)      --------->TOE1(2)    <---------ARR11(3)  <-----------HVH21     <---------LBD16 <   acatttgagagtatgaagaacaacgtacgcgaattggccatggagatatcacttccttcgttcgggtcgagccatacttttctcttcccgcacttgagta  980600                 --------->HSFB2a(2)               ----------->RAV1(2)            <---------HSFC1(2)            --------->HSFC1(2)           --------->ANAC58  ------->GAMYB      <---------ANAC58      --------->ANAC58      <---------ANAC58      --------->ANAC58                                                        -   --------->ARR14(2)  <----------DOF2                                                              <   <---------ARR14(2)<---------At4g35610                                                    ---------  <------ZmHOX2a(1)  --------->At4g35610                                                    <-------- -----ZAT14--------->ANAC58 --------->ANAC46                                              <----------DOF2 xxxxxxxxxxxxxxxxsmallRNA(fl3)          <-----------GT1               *TSS             <---------AHL20(1) =================================bZIP_DOF                         <---------ZAT6      --------->ARR11(3) ====================================MYC_MYB                       ----------->GT1     <---------ARR11(3) ---------TOE2(3)<---------HSFB2a(2)   <-----------GT1     <---------ANAC46       ------------>CBF --   ctgaggatgcgagacgcttctggagcttcaacgaaaccattttagcctctccctgattttggcgaagaagagttaatcgaagaagacaatatctttatat  980700           <---------ZAT6                                                                         <-- <---------RVE1(1)                <---------ATHB12                                                <-- <---------CCA1(1)               ------>MYB83                                                     <-- -------->ARR11(3)     --------->LBD16                                                           <--- ---------ARR11(3)    --------->HSFB2a(2)   <------------CBF                                     ---- >AHL20(2) ----------->GT1       ------>MYB46(1)        --------->At4g35610                   ------- ---TBP   <---------TOE1(3)   ------------>CBF     <----------DOF2<---------YAB1              <------ ------->YAB1         <---------HSFB2a(2) <---------YAB1<---------At4g35610           --------->AHL20(2)   atgatattttctagggttactcttccacaaaaaccaatcgttttctaattgggctttctgctaagcccattataggcctagttttgaatttaacacagat  980800            <---------ANAC55(2)            <---------ANAC58            <---------ANAC46     <-------MYC3     ------->MYC3    --------->ANAC46 <---------REM1(2)                                ------------>CBF -------ANAC58                                  <---------ZAT14 -------ANAC46                                  --------->ZAT18                          <---------ANAC58 -------ANAC58         --------->ANAC58         <---------ZAT18                      <----------DOF2 ----TEIL   <---------ANAC58          --------->ANAC55(2)                      <-----------GT1 ----------->AtSPL3    --------->ANAC58  <------------CBF                 --------->ATHB51 <XXXXXXXXX -->At4g35610<---------SPL7           <---------ANAC55(2)  <-----------GT1<---------ICU4 <---------ANAC46 ---At4g35610--------->LBD16         <-----------------------TaNAC69(2)--------->TOE2(3) <---------ANAC58   gcgtacacgttgttccgtaggcatcaaggcatctatagaaacgtattgagttcacaatgtttcaccctcatttccataatttttcttctttgtgtgttct  980900                                                                                       --------->ANAC58                                                                                       --------->ANAC46                                                                                       --------->ANAC55(2)                                                                                       <---------ANAC55(2)                                                                                       --------->ANAC58                                                                                       --------->O2                                                                                       <---------bZIP60(1)                                                                                       --------->bZIP60(1)                                                                                       ----------->GT1                                                                                   <-----------TGA1                                                                                   <-----------HVH21                              ----------------->AGL1   --------->ANAC58       <<<<<<<<<TBF1                  --------->TOE2(3)<---------ATHB12    --------->ANAC58    <<<<<<<<<TBF1    <---------LBD16       <---------ANAC58           ---------->DOF2    <<<<<<<<<TBF1  --------->ANAC55(1) XXXXXXXXXXXXMIR2936      <---------ANAC58     --------->YAB1    <----------DOF2  --------->ANAC46   ctctctctcggaagaaaaaaccctagtttcttgccgaatcaaggcaaaatcacgatgaagcaatcttctttttcttcttcttcttcgtcacgtaattcaa  981000                                                                                                    -                                                                                                  ---                                                                                                  <--                                                                                                <XXXX                                                                                                <XXXX                                                                                                -----                                                                          <-----------TGA1     ------                                                                          <-----------HVH21   <------                                             <----------DOF2             <---------ANAC58   ---------                                          <---------ARR11(3)             <---------ANAC58  ----------                                          --------->ARR11(3)       <---------ANAC58       <----------                                   --------->At4g35610             <---------ANAC46  <---------ANAC55(2)        --------->MYB52(1)       --------->DAG2                   <---------TOE2(3)  --------->ANAC55(2)      --------->MYB46(3)        ---------->DOF2   <---------GLK1(2)<---------ANAC58 <---------LBD16 <   ctagtttaacaaacagactcaaaaccatcttcaaaaaagctgaagagctttcgattctctgtgctattgacgtttgcgtcatctattacggaccagacgg  981100 -------->At4g35610 ------>ZAT14 -------ZAT14                                                     ---------->DOF2 XXXXXXXXXXXXXXXXMIR398B/C                             ---------->DOF2 XXXXXXXXXXXXXXXXMIR398A                            --------->CCA1(2) ---->At5g28300                                    <---------ARR11(3) ----->GT1                                      --------->HSFB2a(2)   --------->ANAC58 ---DEAR3(1)                                    <---------HSFB2a(2)   --------->ANAC58 >MYB52(1)                                  <---------ANAC58   --------->RAP2.6(2)              ----- ->HVH21                                    <---------ANAC46   ----------->RAV1(1)              <---- -RAV1(2)                         ---------->DOF2  --------->ARR11(3) --------->ANAC46     <---------ICU4 ---------At4g35610<------ZmHOX2a(1)        <---------ANAC58  --------->ZAT18           --------->YAB1   tgaactgagaacatggcctaaggagagaaatacagtgaaagacatggcttcgagatataaagaggccacaaaacgcaagaagagtctcaatcttcatgac  981200                     <------ZmHOX2a(1)                    <----------ID1                   --------->ANAC58              <----------ID1             ------------------------>ANAC81         <------ZmHOX2a(1)       ------------------------>ANAC81                                                              -   --------->HSFB2a(2)        ---------->DOF2                                            --------->ARR14(2)   <---------HSFB2a(2)  ---------->DOF2                        ---------->DOF2           <---------ARR14(2) ---->bZIP60(1)    --------->ANAC58                     --------->ARR14(2) <---------ANAC46  ------>ZmHOX2a(1) -----bZIP60(1)<------ZmHOX2a(1)       ----------->HVH21<---------ARR14(2) <---------ANAC55(2)   <---   ttcatcgagaaggagaaggacaaggacaaagacaaagacaaatgacaaggggaagacgaattcgaaaaagaagaattatgtgaagaattggtatcctgac  981300   <---------ICU4   <--------HAHB4   --------->YAB1                                                             <---------ANAC46  <---------YAB1  --------->MYB46(3)      ------>ZmHOX2a(1)           ---------->DOF2 -------->YAB1------>ZmHOX2a(1)          --------->TOE2(3)          --------->ANAC58                - -------DOF2 --------->ANAC46      <-------TEIL                     --------->ANAC58               <-   tttgatcattactctcctcaacaactctctcaattgattcattccttagaacggactctttctactctgcaagaaaggcttcgtattgttgagtcgcaga  981400                                                         ----------->RAV1(1)                                                      =======================HOX2a_HOX2a                                                     <---------ARR14(2)                                                     <---------ARR11(3)                                          <---------ARR14(2)                                          <-----------ARR10                                          ------->TEIL<------ZmHOX2a(2)                  ------------                                          --------->ARR14(2)                        <---------ANAC46                                          <---------ARR11(1)           --------->ANAC46  <-----------                                         <---------CCA1(2)             --------->ANAC58  ------------                                 --------->ZAT6      --------->AGP1   ------>ZmHOX2a(1)<---------ARR14(2) ---------->RAV1(1)   <---------At4g35610<---------ARR14(1)<---------ALFIN1      --------->ANAC46 ---------ID1      <-------TEIL<-----------GT1       --------->ARR14(2)--------->ANAC58--------->ARR14(2)   aacaacaaaacaaaaacttggtgcatcagagtttaacaccatcgtatctgaaccagatccaacacttgaatcctagcaacttctcgccgtatatgtacaa  981500  Previous    Next  AGI:  At4g02230.1    Description:  60S ribosomal protein L19 (RPL19C). Identical to 60S ribosomal protein L19-3 (RPL19C) [Arabidopsis Thaliana] (GB:P49693;GB:O81422;GB:Q9M114); similar to EMB2386 (EMBRYO DEFECTIVE 2386), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G02780.1); similar to unknown [Populus trichocarpa] (GB:ABK93939.1); contains InterPro domain Ribosomal protein L19/L19e; (InterPro:IPR000196); contains InterPro domain Ribosomal protein L19/L19e, domain 1; (InterPro:IPR015972); contains InterPro domain Ribosomal protein L19/L19e, domain 3; (InterPro:IPR015974) Range:  from: 979170    to: 980670    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02235.1    Description:  AGL51; transcription factor. similar to AGL78, transcription factor [Arabidopsis thaliana] (TAIR:AT5G65330.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 980955    to: 981711    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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