Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     ----------->GT1   <------MYB46(1)                 --------->LBD16   <------MYB83                    <---------HSFB2a(2)                         --------->At4g35610  --------->MYB59                  --------->HSFB2a(2)                  --------->YAB1 ------>ATHB12     --------->TOE2(3)                                  ------>MYB83 -ANAC58    --------->YAB1     <---------ARR14(2)                   --------->TOE1(2) -ANAC58 --------->WOX13(1)    --------->ARR14(2)      ---------->DOF2------>MYB46(1) -ANAC46--------->MYB46(3)     ------->TEIL       --------->WOX13(1)--------->TOE2(2)   tgatttggtaacaatcagaaaccatagaccatgaatccgagaagaacatagtcaatccaaagctactaaacctacgataacatctgaacaagtccaaact  980300                                                                                              ------>MYB83                                                                                            ---------                                                                                            ---------                                       --------->REM1(1)                               <-----------TGA1                                       <---------ALFIN1                                <-----------HVH21                                     ----------->RAV1(1)                        --------->WOX13(1)                               --------->YAB1                                 <---------ATHB12------>MYB46(1)             <---------GLK1(2)<-------TEIL                    --------->At4g35610     --------->ANAC46        <-----------GT1     <---------GLK1(2)                 <---------At4g35610     --------->bZIP60(2)   aaacaaaattttacagaatttcaaaaatcagattcatagcaacaccatttccaagctcaacttcatcagactgaattcaaatcattcaacgtcacctacg  980400                                         --------->HSFC1(2)               <----------DOF2           <---------HSFC1(2)          ----------->HVH21               ------>ZmHOX2a(1)        --------->ANAC58           --------->ANAC58           <---------ARR14(2)           --------->ANAC58           --------->ANAC58   <---------At4g35610         <---------YAB1                  --------->ANAC58   --------->At4g35610         --------->ICU4                  --------->ANAC58  --------->ANAC58           <--------HAHB4             --------->AtMYB61  --------->ANAC58          <---------YAB1             ----------------->AGL2  ----------->GT1 >TOE1(2)  <---------ARR11(3)<---------ICU4         --------->DEAR3(1)       ---------->DOF2 >TOE2(2)  --------->ARR14(2)--------->YAB1      ------>ZmHOX2a(2) --------->ANAC46             -----   aagtaagctacagtatcctttttttctactatcattatcaacaagcttcgatcgcagaccaaaacaagcacgagaccgagaaagttaaatctgatcaaca  980500                                                                                                <----                                                                                          <xxxxxxxxxx                                                                                         ============                                                                                         --------->TGA1a                                                                                       <---------ALFIN1                             --------->ARR14(2)                                       --------->LBD16                             <---------ARR14(2)                                      --------->LBD16                        --------->ANAC58                 <---------MYB52(1)          --------->ANAC58                        --------->ANAC58                <---------SPL7               --------->ANAC46                       <-------TEIL           <-----------GT1             =========================bZIP_DOF                       ------->TEIL        <---------GLK1(1)      --------->ANAC58   --------->ANAC58                       --------->SPL7      --------->GLK1(1)      --------->ANAC58  <---------HSFB2a(2)                     --------->TOE1(2)    --------->ARR11(3)   --------->ALFIN1     --------->HSFB2a(2)                     --------->TOE2(2)    <---------ARR11(3)  <-----------HVH21     <---------LBD16 < ------>RAV1(1)      <---------SPL7  --------->AtLEC2 <---------TOE1(2)   <----------DOF2============   acatttgagagtatgaagaacaacgtacgcgaattggccatggagatatcacttccttcgttcgggtcgagccatacttttctcttcccgcacttgagta  980600                 <---------HSFB2a(2)               ----------->RAV1(2)            --------->HSFC1(2)            <---------HSFC1(2)           --------->ANAC58  ------->GAMYB      <---------ANAC58      --------->ANAC58      <---------ANAC58      --------->ANAC46                                                        -   --------->ARR14(2)  <----------DOF2                                                              <   <---------ARR14(2)--------->At4g35610                                                    ---------  <------ZmHOX2a(1)  <---------At4g35610                                                    <-------- -----ZAT14--------->ANAC58 --------->ANAC58                                              <----------DOF2 xxxxxxxxxxxxxxxxsmallRNA(fl3)          <-----------GT1               *TSS             <---------AHL20(1) ====================================MYC_MYB                       ----------->GT1     <---------ARR11(3) ---------TOE2(3)--------->HSFB2a(2)   <-----------GT1             <---------ZAT6      --------->ARR11(3) =================================bZIP_DOF                 <---------ANAC46       ------------>CBF --   ctgaggatgcgagacgcttctggagcttcaacgaaaccattttagcctctccctgattttggcgaagaagagttaatcgaagaagacaatatctttatat  980700           <---------ZAT6                                                                         <-- <---------CCA1(1)                <---------ATHB12                                                <-- <---------RVE1(1)               ------>MYB46(1)                                                  <-- -------->ARR11(3)     --------->LBD16                                                           <--- ---------ARR11(3)    <---------HSFB2a(2)   <------------CBF                                     ---- >AHL20(2) ----------->GT1       ------>MYB83           <---------At4g35610                   ------- ---TBP   <---------TOE1(3)   ------------>CBF     <----------DOF2<---------YAB1              <------ ------->YAB1         --------->HSFB2a(2) <---------YAB1--------->At4g35610           --------->AHL20(2)   atgatattttctagggttactcttccacaaaaaccaatcgttttctaattgggctttctgctaagcccattataggcctagttttgaatttaacacagat  980800            <---------ANAC58            <---------ANAC55(2)            <---------ANAC46     ------->MYC3     <-------MYC3    --------->ANAC46 <---------REM1(2)                                ------------>CBF -------ANAC46                                  --------->ZAT18 -------ANAC58                                  <---------ZAT18                          <---------ANAC46 -------ANAC58         --------->ANAC58         <---------ZAT14                      <----------DOF2 ----TEIL   <---------ANAC58          <---------ANAC55(2)                      <-----------GT1 ----------->AtSPL3    --------->ANAC58  <------------CBF                 <---------ICU4 <---------ANAC58 -->At4g35610<---------SPL7           --------->ANAC55(2)  <-----------GT1--------->ATHB51 <XXXXXXXXX ---At4g35610--------->LBD16         <-----------------------TaNAC69(2)--------->TOE2(3) <---------ANAC58   gcgtacacgttgttccgtaggcatcaaggcatctatagaaacgtattgagttcacaatgtttcaccctcatttccataatttttcttctttgtgtgttct  980900                                                                                       <---------bZIP60(1)                                                                                       --------->O2                                                                                       --------->ANAC55(1)                                                                                       --------->ANAC55(2)                                                                                       --------->ANAC58                                                                                       --------->ANAC46                                                                                       <---------ANAC55(2)                                                                                       --------->bZIP60(1)                                                                                       ----------->GT1                                                                                   <-----------TGA1                                                                                   <-----------HVH21                              ----------------->AGL1   --------->ANAC58       <<<<<<<<<TBF1                  --------->TOE2(3)<---------ATHB12    --------->ANAC58    <<<<<<<<<TBF1    <---------LBD16       <---------ANAC58           ---------->DOF2    <<<<<<<<<TBF1  --------->ANAC58 XXXXXXXXXXXXMIR2936      <---------ANAC58     --------->YAB1    <----------DOF2  --------->ANAC46   ctctctctcggaagaaaaaaccctagtttcttgccgaatcaaggcaaaatcacgatgaagcaatcttctttttcttcttcttcttcgtcacgtaattcaa  981000                                                                                                    <                                                                                                  <--                                                                                                  ---                                                                                                <XXXX                                                                                                <XXXX                                                                                                -----                                                                          <-----------TGA1     ------                                                                          <-----------HVH21   <------                                             <----------DOF2             <---------ANAC58   ---------                                          --------->ARR11(3)             <---------ANAC58  ----------                                          <---------ARR11(3)       <---------ANAC58       <----------                                   --------->At4g35610             <---------ANAC58  <---------ANAC55(2)        --------->MYB52(1)       --------->DAG2                   <---------TOE2(3)  --------->ANAC55(2)      --------->MYB46(3)        ---------->DOF2   <---------GLK1(2)<---------ANAC46 <---------LBD16 -   ctagtttaacaaacagactcaaaaccatcttcaaaaaagctgaagagctttcgattctctgtgctattgacgtttgcgtcatctattacggaccagacgg  981100 ---------At4g35610 -------ZAT14 ------>ZAT14                                                     ---------->DOF2 XXXXXXXXXXXXXXXXMIR398A                               ---------->DOF2 XXXXXXXXXXXXXXXXMIR398B/C                          --------->CCA1(2) ---->At5g28300                                    --------->ARR11(3) ----->GT1                                      --------->HSFB2a(2)   --------->ANAC58 ---DEAR3(1)                                    <---------HSFB2a(2)   --------->ANAC58 >MYB52(1)                                  <---------ANAC46   ----------->RAV1(1)              <---- ->HVH21                                    <---------ANAC58   --------->RAP2.6(2)              ----- -RAV1(2)                         ---------->DOF2  <---------ARR11(3) --------->ANAC46     <---------ICU4 -------->At4g35610<------ZmHOX2a(1)        <---------ANAC58  --------->ZAT18           --------->YAB1   tgaactgagaacatggcctaaggagagaaatacagtgaaagacatggcttcgagatataaagaggccacaaaacgcaagaagagtctcaatcttcatgac  981200  Previous    Next  AGI:  At4g02230.1    Description:  60S ribosomal protein L19 (RPL19C). Identical to 60S ribosomal protein L19-3 (RPL19C) [Arabidopsis Thaliana] (GB:P49693;GB:O81422;GB:Q9M114); similar to EMB2386 (EMBRYO DEFECTIVE 2386), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G02780.1); similar to unknown [Populus trichocarpa] (GB:ABK93939.1); contains InterPro domain Ribosomal protein L19/L19e; (InterPro:IPR000196); contains InterPro domain Ribosomal protein L19/L19e, domain 1; (InterPro:IPR015972); contains InterPro domain Ribosomal protein L19/L19e, domain 3; (InterPro:IPR015974) Range:  from: 979170    to: 980670    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g02235.1    Description:  AGL51; transcription factor. similar to AGL78, transcription factor [Arabidopsis thaliana] (TAIR:AT5G65330.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 980955    to: 981711    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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