Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->AHL20(2)           --------->YAB1          <<<<<<<<<ARR1          <---------ATHB12                                  --------->DAG2          <<<<<<<<<ARR2                                    ---------->DOF2     <-----------GT1                                     <---------------AGL15     --------->YAB1                                      --------------->AGL15    <---------YAB1              --------->AtLEC2        <-----------------AGL2       <---------------AGL15  <--------HAHB4 <---------AHL20(2)                     =============================================  --------->ATHB51      <---------------AtSPL8          <-----------------AGL3      <----------------  <---------ICU4 --------->AHL20(1)               --------->AHL20(2)                <---------------- <---------YAB1  <---------AHL20(1)    <---------AHL20(1)<---------HSFB2a(2)       --------->YAB1 --------->ICU4  --------->ARR11(3)   --------->YAB1    ----------------->AGL2    <---------YAB1   ttcattattacaatcataaaatattgtaagtaccatgctaacatattttcaaaaaaattctaaaagtggaattttgggatttttatgacaattttggaaa  905700                                        <---------ARR14(2)                                        --------->ARR14(2)                                     --------->HSFB2a(2)                                  <---------ARR14(2)                              <------ZmHOX2a(2)                               ---------->DOF2                             <---------ARR14(2)                       --------->YAB1                             --------->ARR14(2)                      <---------YAB1                     --------->YAB1  <---------HSFB2a(2)          <---------AHL20(2) =MADS_MADS         >>>>>>>>>MYB98--------->ARR14(2)  <---------AHL20(2)   <----------DOF2 -AG            ----------->GT1------>ZmHOX2a(2) <---------TOE2(3)--------->AHL20(2)              --- -AGL1  <-----------GT1 --------->MYB52(1)------>ZmHOX2a(2)       <---------YAB1       <---------ICU4   acagaacaattttcggtttagtaacataacagatcggttctggatcggtttaagaattaatgggccatattattatacttttaagcccattaatacagag  905800                                --------->ANAC58       --------->YAB1                      --------->ARR11(3)       --------->RAP2.6(3)                      <---------ARR11(3)      --------->MYB52(1)                                    <                      <-----------ARR10       <-----------GT1                                      <-                 ------------>CBF         <----------DOF2 <--------ATHB1                         <---          --------->ANAC46      --------->ANAC46 ------->GAMYB        <---------HSFB2a(2)        <--- ------->DOF2 <-------GAMYB     --------->ANAC58--------->ANAC46      --------->HSFB2a(2)       <----   caaagcccatttacgtcgttgcaatatctcactcactccataagcttttaacggcatgaataattcgattttcgagatggcacagagagagagcgagtat  905900                                                   --------->LBD16                                                  <---------LBD16                                                 <---------LBD16                                             <----------TaMYB80                                            --------->ARR14(2)                                            <---------ARR14(2)                                            <-----------ARR10                                         <---------ANAC58                                         <---------ANAC58                                         <---------ANAC46                                       <---------ATERF1(1)                                       ------>NtERF2                            --------->ANAC46                    ------------>CBF   --------->LBD16                       <---------ZAT14                   ------>NtERF2      --------->ATERF1(2)           ------------>CBF                   --------->LBD16    <---------ATERF1(2)          --------->ANAC58                  --------->ANAC58    --------->DEAR3(1)           --------->ANAC58         <-------GAMYB--------->WOX13(1)<------NtERF2--------->At5g28300     --------->ZAT14 -----------GT1   <<<<<<<<<<E2Fa      <---------DEAR3(1)          --------->LBD16           <-------- --------YAB1     --------->ANAC58   <---------LBD16--------->LBD16--------->ANAC46   --------->YAB1 ------ICU4       --------->ANAC46   --------->ATERF1(1)          <---------LBD16 ----------------->AGL3 -----HAHB4      <---------LBD16    <---------RAP2.3(1)          --------->LBD16--------->ANAC58 -----YAB1    <-----------GT1   <----------DOF2<-----------GT1  <---------LBD16 --------->ANAC58   tattactagagcgttgtttcccgccaattagcaactttcgccggcgtattttcccggtgaaaaattcccgcgcaatctcttcactccataataagcttct  906000                                                                                                    <                                                                                                    -                                                                                                 <---                                                                                                <----                                                                                           ----------                                                                                           <---------                                                                                           ------>NtERF2                                                                                          <---------ETT(1)                                                                                          -----------                                                                                          --------->DEAR3(1)                                                                                          --------->RAP2.3(3)                                                               <-----------GT1            --------->At1g77200                                                           <----------DOF2                --------->DEAR4(1)                               --------->ANAC46            <---------DAG2                 --------->DREB2C(2)                             <-----------GT1           <---------ZAT14                   --------->RAP2.3(1)   --------->WOX13(1)------>NtERF2                     --------->ZAT14             <-----------HVH21< ------------>CBF   --------->DEAR3(1)                 <---------ZAT18           <------NtERF2  ----- -GLK1(2)          --------->ORA47(2)                  --------->ZAT18     <---------MYB52(1)   <----   ctcatcaatctcgctctcttcgccgactgtttcactccccttctctctcactctctgtgcgctttattccactctccgatggctccgtctcgccgacaga  906100                <------MYB83         ------>ZmHOX2a(2)        --------->GLK1(1)        <---------GLK1(1)       <---------ARR14(3)       --------->ARR14(3)       --------->ARR11(3)       --------->ARR14(2)       <---------ARR11(3)       <---------AGP1         <-----------HVH21       <---------ARR14(2)--------->ZAT2     ----------->ARR10   <---------ZAT2                    --------->At4g35610 ---------LBD16 <---------MYB46(3)                     --------->ARR14(2) -------->At4g35610      --------->At4g35610           --------->GLK1(2) ---ZmHOX2a(2)  <------MYB46(1)                        <---------ARR14(2) -----ARR14(2) <---------MYB46(3)                     --------->GLK1(1) ->RAV1(1)     <---------AtMYB61            ========================================================= --HVH21<------ZmHOX2a(2)<---------At4g35610------>ZmHOX2a(1) >HVH21<-----------ARR10--------->ANAC46    <---------------AGL15 ---------At4g35610   --------->MYB46(3)    --------------->AGL15 ---->ARR14(2)<---------MYB52(1)     <-----------GT1  <---------GLK1(1)                      -------- -------HVH21<-------GAMYB  --------->At4g35610<----------DOF2 --------->REM1(1)           ------>ZmHOX2a(1)   tcagcggaagatctccgttggtgaaccagcagcgtcaaatcacctccttctttgggaaatctgcttcatcatcttcttctccgtctccatctccttcacc  906200                                  --------->TOE2(3)                                  ------->GAMYB                                  --------->TOE1(3)                                -------->P   <---------ARR11(3)                               ------->GAMYB<---------CCA1(2)        ------>NtERF2                              --------->MYB46(3)                     --------->LBD16                       <---------CCA1(2)--------->TOE1(3)           --------->DEAR3(1)                     <---------ALFIN1   --------->TOE2(3)          <---------LBD16                    --------->LBD16    --------->ZAT6            --------->ARR14(2)                 -    --------------->AGL15     <---------MYB111(1)        <-----------HVH21                    ------- ===================MADS_MADS <---------MYB111(2)        <-----------TGA1                   ------->TEIL ->REM1(1)--------->YAB1      <---------MYB55(2)        --------->ANAC46           --------->LBD16 --   atctctctccaataagaaaacccccaaatctaacaaccctaaccctaaatctccgtctccgtcaccatctccgcctaagaaaacccccaaattgaaccct  906300                                                                                                    <                                                                                             --------                                                           <---------ZAT14                  ---------                                                        ------>ZmHOX2a(1)                  <---------At4g35610 -------->TOE2(3)            ------>ZmHOX2a(1)        ----------->RAV1(2)                  --------->At4g35610 -->TOE1(3)       <---------ZAT2                  ------>ZmHOX2a(1)                    <-----------HVH21 ------->ZAT6    ------>ZmHOX2a(1)       ------>ZmHOX2a(1) --------->ZAT14             <-----------TGA1   aaccctagttctaatcttcctgctcgtagtcctagccctggtcctgatactccttctcctgtacagtccaagtttaagaagccccttctcgtcatcggac  906400                                             <---------AtMYB61                                             --------->ALFIN1                                             <---------DEAR3(1)                                          --------->ALFIN1                                        <---------bZIP60(2)                                     ----------->HVH21                                 <---------At5g28300                                --------->MYB52(1)<------NtERF2<---------TOE2(3)                            --------->AHL20(2)   <---------MYB46(3)             ------>ZmHOX2a(1)<---------ANAC58  <---------ANAC46            --------->TOE2(3) <---------ANAC58  --------->ALFIN1   --------->AtMYB61  ----------->GT1----------->TGA1 --------->ANAC58 ---------ALFIN1      <---------MYB46(3)<---------ANAC46       <---------TOE1(3) --->HVH21------>NtERF2  <---------ICU4 <---------O2  --------->ANAC58      <----------DOF2    ------ >TOE1(1)--------->DEAR3(1) <---------AHL20(2)<---------MYB46(3)    --------->ATHB12          <------   agacaccttcgcctcctcaatcggtggtaattacttacggtgacgaggtggtggggaagcaagttagggtttattggcctttggataaaaaatggtatga  906500                 >>>>>>>>>>GATA-1                 >>>>>>>>>>GATA-4                 >>>>>>>>>>GATA-2           <---------ANAC46                 >>>>>>>>>>GATA-3           <---------ANAC58                --------->YAB1         <---------MYB46(3)        <---------bZIP60(2)           --------->ALFIN1        <---------ANAC58             <-------MYC2                                                  <-        <---------ANAC46             <-------MYC3                                                  <-     ----------->TGA1                ------->MYC2                                                  <-     ----------->HVH21          --------->ANAC58                                                   <-   <---------ANAC58             --------->ANAC58                                                  <--   <---------ANAC58 --------->DAG2   ------->MYC3 XXXXXXXXXXXXXXXXXXXX>MIR854A-E ---------->DOF2  --- --->ATHB12    <---------YAB1 <--------P    <---------ANAC58              <---------ARR14(2)     ---- ---YAB1<---------ANAC58--------->ALFIN1<-------GAMYB --------->ALFIN1    --------->ARR14(2)  -------   tgggagcgtgacgttttatgataagggtgagggtaagcatgtggttgagtatgaagatggggaagaagagtctttggatttgggaaaggagaagactgag  906600  Previous    Next  AGI:  At4g02070.1    Description:  MSH6 (MUTS HOMOLOG 6-1). Identical to DNA mismatch repair protein MSH6-1 (MSH6-1) [Arabidopsis Thaliana] (GB:O04716); similar to MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) [Arabidopsis thaliana] (TAIR:AT4G25540.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78918.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40103.1); similar to DNA mismatch repair protein [Petunia x hybrida] (GB:AAT67045.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein MutS-homolog MSH6 (InterPro:IPR015536); contains InterPro Range:  from: 906079    to: 912930    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version