Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             XXXXXXXXXXXXXXXXXXXX>MIR403  <---------WRKY18(1)                                                    --------->AHL20(2) --------->WRKY38(1)                                              ---------->DOF2    --------->ANAC46 --------->WRKY45                                               --------->YAB1       --------->ANAC58 --------->WRKY12                                          --------->AHL20(2)        --------->ANAC58 ->YAB1          ---------->DOF2                 ----------->RAV1(1)   <----------DOF2        <------   atgttgaccaagttttgatcaaagtcgaatacagagagactaaatatacaacaacaaaaaaaaaaatcaaaagctttaaattcacacacacaaatttcga  901000                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                                 <-----------GT1                                                                            <------------CBF                                                                          --------->ICU4       ------                                                          <------ZmHOX2a(1)--------->ATHB51    ------                               <---------GLK1(1) --------->ANAC46  <---------At4g35610       <------- ---YAB1             <---------ZAT6 --------->ZAT6     <------ZmHOX2a(1)  <---------YAB1   <---------   tagtagctatggatttaagacaagtgtaagaagaaatcacactagttttcaacgtaaggaggatgatgaagatgacattattgtatccacatttgtcacc  901100                                                                                           xxxxxxxxxx                                                                                          <---------MYB52(1)                                                                                          <--------P                                                                                   <---------ZAT14                                                                              xxxxxxxxxxxxxxxxxxxxxxx                             --------->ARR11(3)                              xxxxxxxxxxxxxxxxxxxxxxxx                           <---------AHL20(2)                               xxxxxxxxxxxxxxx>smallRNA(le3)                          --------->AHL20(2)                                *TSS   ---------->DOF2  <                         <---------YAB1                  --------->ANAC58   xxxxxxxxxxxxxxx>smallRNA(si3)                      <---------AHL20(2)                 ----------->GT1    xxxxxxxxxxxxxxxx>smallRNA(fl3)                      <---------YAB1      <---------AHL20(2)              <---------MYB46(3)       <- --->ANAC58          <---------AHL20(1)   --------->AHL20(2)     --------->ZAT6  xxxxxxxxxxxxxxxxxxxx --->ANAC58       --------->YAB1   ----------->GT1       --------->ANAC58--------->ALFIN1--------->At5g28300 ----GT1         <---------YAB1    <---------MYB46(3)  ---------->DOF2--------->DAG2    <---------MYB46(3) --HVH21       --------->YAB1<---------ARR11(3)   --------->MYB52(1) ---------->DOF2   <---------ANAC46   cattttttggaaacagatgataatattattaaatctttggttaattaaatactaagggaaagaaataacacaaaagtggttgtagtatagcggttagtat  901200                                             <----------DOF2                                             <---------DAG2                                          <---------ALFIN1            --------->ALFIN1            <---------ALFIN1          <---------ANAC58              --------->RAP2.6(2)          <---------ANAC58        --------->ANAC46          <---------ANAC46        --------->LBD16          xxxxxxxxxxxxxxxx>smallRNA(s)  ----------->RAV1(1)                       --------->MYB111(1)      <---------RAP2.6(2)        <---------LBD16                                  --------->MYB52(2)    xxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC46                                 ----------->ARR10  ------->MYC3               <---------ARR14(2)                                  <--------P  <-------MYC3        ------>NtERF2   --------->At4g35610                  <-----------RAV1(2) <---------O2        --------->LBD16  <------NtERF2                       --------->ZAT2 --------->O2  <---------PCF2--------->ARR14(2)                           <---------At4g35610 xxxxx>smallRNA(fl3)<---------LBD16  --------->RAP2.6(2)                  <---------ZAT2 xxx>smallRNA(fl3) <---------LBD16------>NtERF2                         --------->HSFB2a(2) xx>smallRNA(se3)<---------ARR14(2)--------->ZAT2                       <---------HSFB2a(2)        -- ---------TOE1(2)--------->ARR14(2)<------NtERF2                 <---------AHL20(2)<---------HSFC1(2) --------ALFIN1----------->HVH21 --------->LBD16             <----------DOF2     ==================== xx>smallRNA(fl3)--------->PCF5 <---------LBD16     <-----------GT1    ----------------->AGL1   -----   cccacgttgtggccgtggggacccgggctcgaatcccggcagccacactttttgttacctcttcttttttatttccagcaggggtagtttcgacattaca  901300                  ------>ZmHOX2a(2)                --------->ARR11(3)                --------->ARR14(2)                <---------ARR11(3)          <---------ICU4          --------->ATHB12          <--------HAHB4         --------->ICU4         <---------YAB1        <---------ARR11(3)     <-------MYC3<------ZmHOX2a(2)     ------->MYC3--------->CCA1(2)    <---------TGA1a    --------->TGA1a    <---------O2<---------ARR14(2)    --------->O2--------->AGP1           --------->LBD16            --------->LBD16    --------->ANAC55(2)                  ------>NtERF2              ------>NtERF2        --------->MYB46(3)    <---------ANAC46                    --------->ANAC58           --------->ANAC46      --------->REM1(1)    --------->ANAC46                    --------->ANAC58          <---------LBD16       *TSS   <-----    <---------ANAC55(2)    <-------TEIL --------->ANAC46     <---------DAG2          <---------At4g35610 ------->YAB1   <---------AGP1         <---------LBD16       <----------DOF2         --------->At4g35610 =============MYC_MYB     <---------MYB52(1)              <-----------GT1        <-----------TGA1  <- ---->TOE2(3) ----------->ARR10  <-----------GT1        --------->YAB1           <-----------HVH21<--   ttaatcacgtgatcattagatctggaccgttcattttactccccgccatttctctctataatacttttcccgcctaaactcatcgtcatctacaaccctt  901400  ------>NtERF2 --------->DEAR3(1)            <----------DOF2 -----DOF2                --------->KAN4(2) --------At5g28300      <-------TEIL             <---------ALFIN1                  ---------->DOF2 ---------GT1  <-----------HVH21            ------>ZmHOX2a(1)<---------ETT(2)    <---------YAB1     <   ttaccgcccaattttgcagtcactggttcattcctttctcttcttcctcttccactctctctctcgacccaagttttgaaaccatgaaagaccacgattt  901500          ----------->GT1         <---------TOE2(3)       ---------->DOF2     <------NtERF2    ----------->RAV1(1)    ------>NtERF2   <----------ID1  <------NtERF2  --------->RAP2.3(1)                        <---------ICU4 <---------ATERF1(1)                       --------->GLK1(2)             <---------GLK1(2) ------>NtERF2                       <---------HSFB2a(2)      --------->At4g35610<---------DAG2 <---------RAP2.3(1)                 --------->HSFB2a(2)      <---------At4g35610<----------DOF2 ---------DEAR3(1)                <---------MYB52(1)   <----------DOF2 <---------YAB1 <-----------GT1   cgacggcgacaaaggttacattctctcttcttctccgttctcgataatcttttccctcttttttcgctgagttttgattctcactttttttcttcttgta  901600                                                 --------->CCA1(2)                                                 <------ZmHOX2a(2)                                                <---------ARR11(3)                                                --------->ARR11(3)                                                <---------ARR14(2)                                    --------->ANAC58                                    --------->ANAC58                                   <------NtERF2--------->ARR14(2)                                  ------>NtERF2 <-----------ARR10                                  <---------ATERF1(1)                                 ----------->HVH21                                 --------->DEAR3(1)              --------->GLK1(2)                                --------->DEAR3(2)------>ZmHOX2a(2)                     <---------ARR14(2)                         <---------GLK1(2)      --------->AGP1  <---------GLK1(2)       <---------ARR11(3)                      --------->HSFB2a(2)       <---------AGP1  --------->ARR14(2)      --------->ARR14(2)                --------->GLK1(1)--------->At1g77200          ----------->ARR10         --------->ARR11(3)                <---------GLK1(1)<---------DEAR3(1)     <-------TEIL                    <---------ARR14(3)    <---------ANAC58<---------HSFB2a(2)        --------->At4g35610                      --------->ARR14(3)    <---------ANAC58--------->HSFB2a(2)        <---------CCA1(2)<---------ARR14(2)     <---------CCA1(2)   tatagggcttgccaagggatttctcgagaatttcgccgacgctaatggcagatctaagtacatggagattctcgtaagtctcatttccaatatcttccac  901700                          --------->HSFC1(2)                          <---------HSFB2a(1)                          --------->HSFB2a(1)                         <-----------ARR10                                                      <----                         <---------ARR14(2)                                                    ------                         --------->ARR14(2)                                                    ------                         <---------ARR11(1)                                                   -------                         --------->GLK1(2)                                                    -------                         ------->TEIL                                                         <------                         ---------->TaMYB80                                                 ---------                        <---------GLK1(2)                                                  <---------TOE1(2)                        <---------CCA1(2)      --------------->AtSPL8                    --------->TOE1(2)                        <---------ARR14(1)  <----------DOF2    ------->TEIL             --------->YAB1                     --------->HSFB2a(2)<---------TOE1(3)   <---------YAB1              ----------->GT1   <-----------GT1   <---------HSFB2a(2)<---------TOE2(3)<---------AHL20(2)   ----------->GT1 <------   caatttctctcttctagggttttcgcgaatctccctaattttagggttttatgttctattttatgaatttgtgtagcaagaggtttcaaatcgtaagatt  901800 ---TEIL --->CCA1(2) --->ARR14(1)                                                                                     <-- -->ARR11(1)                                                                                     <--- -->ARR14(2)                                                                                --------- ---ARR14(2)   ------>ZmHOX2a(2)                                                            --------- -->ARR10    --------->ARR11(3)                            <-----------RAV1(1)              --------- ---GLK1(2)  <---------ARR14(2)                           <---------TOE2(3)             <---------HSFB2a(2)   cgagctattcaagtcgatctcgatgacttattcaatgtgagtttttttttgtttctctctaatgttgtttctgttttggatgttgctattgtagaagcca  901900  Previous    Next  AGI:  At4g02055.1    Description:  pre-tRNA. tRNA-His (anticodon: GTG) Range:  from: 901176    to: 901247    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g02060.1    Description:  PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase. Identical to Protein PROLIFERA (PRL) [Arabidopsis Thaliana] (GB:P43299;GB:O04721); similar to DNA replication licensing factor, putative [Arabidopsis thaliana] (TAIR:AT5G46280.1); similar to mini-chromosome maintenance 7 [Pisum sativum] (GB:AAQ72567.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40111.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61585.1); contains InterPro domain MCM protein 7; (InterPro:IPR008050); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain MCM; (InterPro:IPR001208); contains Inter Range:  from: 901388    to: 905590    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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