Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <-------GAMYB------->GAMYB                     <---------DAG2           --------->MYB46(3)                     <----------DOF2         ---------->DOF2                                 <-------        <---------MYB52(1)       <---------MYB46(3)                                     <---------ICU4 -----bZIP60(1)     <---------ANAC58        --------->MYB52(1)                 xxxxxxxxxxxxxxxx>smallRNA(i) ---->bZIP60(1)     <---------ANAC58<---------MYB46(3)                         <----------DOF2 ---->TGA2(1) <---------ALFIN1  <---------TOE2(3) <---------ZAT18             <---------ICU4 <------- -----TGA2(1)<---------ZAT18  --------->MYB52(2)--------->At4g35610        --------->YAB1<----------DOF2   atcattctcggtttgcccacttgctttttggtttgtggttgtggcataacagcccacaaacttcatgactagctcattcatctttgcccatctttgctta  863900        --------->ANAC58        --------->DEAR3(1)        --------->ANAC58       <------NtERF2       --------->ATERF1(1)       --------->SPL7      <---------ATERF1(1)      ------>NtERF2                       --------->At4g35610     ----------->HVH21                 <---------GLK1(1)                            xxxxxxxxxxxxxxxx>smallRNA(s)     --------->DEAR3(1)               <---------ARR14(2)             --------->HSFB2a(2)    --------->ATERF1(1)         <---------ARR11(3)              ------>ZmHOX2a(1)  <----------DOF2    --------->DEAR3(2)     --------->WRKY18(1)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->At4g35610    <-----------HVH21    ----------->RAV1(1)   <---------HSFB2a(2)   <---------At4g35610   --------->DEAR3(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------DAG2 --ANAC58      <----------DOF2  --------->ARR11(3)      --------->ANAC58 --------->DAG2             - --ANAC58------>NtERF2<---------ALFIN1--------->ARR14(2)--------->ANAC58---------->DOF2          <---   cattgagccgacgccctctttggaacaccgtcaaggtctggatttgctgcaacataagaagcaatcctcttccaaaaagctggagctttttgctcatttc  864000                                              <---------ARR11(3)                                              <---------ARR14(2)              <---------ANAC58       --------------->AtSPL8          <----------DOF2            <---------ICU4     --------->ZAT2 <---------ANAC58     xxxxxxxxxxxxxxxx>smallRNA(i)    <---------------AtSPL8------>NtERF2    <-------PIF5                    --------->ICU4      <---------At4g35610         --------->ANAC58    ------->PIF5                    <---------ATHB12    --------->At4g35610         --------->ANAC58  <---------LBD16          --------->ANAC46   --------->ARR14(2)       <---------ANAC58 <---------ALFIN1      <-----------GT1       <---------CCA1(2)  <---------CCA1(2) <---------ALFIN1 -------->MYB46(3)<---------ZAT6  --------->YAB1    <----------DOF2    <-----------------AGL1-------- ------ETT(1) <---------ANAC58   --------->ICU4   ------>ZmHOX2a(1) <----------DOF2------>NtERF2-----   cgaccacggggtctttgctagtgtttaaccaggcactaatgagtactatatcctctttagctgcccatttctttcttgcaatggccaccctagaagcata  864100                                    --------->MYB52(1)                                --------------->AGL15                                <---------HSFB2a(2)                                --------->HSFB2a(2)                                <---------------AGL15       --------->TOE2(3)                               ----------------->AG       ------>MYB46(1)                        ----                               <-----------------AG       -------->P--------->ATHB12        <--------                               <-----------------AGL1     ------>MYB83                   <----------DOF2                               ----------------->AGL1  ------>ZmHOX2a(2)        <-----------RAV1(1)                               ----------------->AGL2 <------ZmHOX2a(2)       <xxxxxxxxxxxxxxxxxxxxxx              <---------ANAC58 <-----------------AGL2<-----------ARR10      <---------YAB1  <--------     <---------ICU4            <-----------------AGL3<---------ARR14(2) <------MYB46(1) <---------ANAC58    ------>ZmHOX2a(1)      <---------ANAC58         <------ZmHOX2a(1) <---------WOX13(1)<---------ANAC58 ->YAB1    <----------DOF2 <---------ANAC58       <---------TOE2(3)<---------YAB1  <-----------RAV1(1) ---->MYB52(1)<---------ANAC58 ----------------->AGL3--------->ARR14(2) <------MYB83 <---------RAP2.6(2)   acgttcctcatgactttcttgacaacgttgagttccaaaaacgggaatttctgaggatccaacctcatattgattggtctcattgttgtggctttcttgt  864200                        <---------MYB52(1)                       --------->LBD16                     <---------LBD16      ----------->RAV1(1)   <---------ANAC58                      <---------ANAC58 ----->WRKY38(1)  ---------->DOF2          ----------->GT1        <---------ANAC46 -ANAC58         ---------->DOF2         <---------ANAC46  *TSS   <---------ANAC58 xsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <------ -ANAC58     <-------TEIL   <---------ANAC58      --------->GLK1(2)<----------DOF2   ---------->DOF2   tgactgtgcaacaagtccataaaaccggaagcttgagaaaatggattgtaagaatccattttcaagttgctttggatgtttagagtagaaagaagggtag  864300                               --------->ANAC58                               --------->ANAC58                               --------->GLK1(2)                   ----------->GT1                  --------->DAG2              <------ZmHOX2a(1)        <----------DOF2                 ---------->DOF2            <---------TOE1(3)    ----------->GT1            <-------- --P   ---------->DOF2 --------->MYB52(1)   <---------TOE2(3)<---------TOE2(3)--------->ATHB12<------   ctatgtgtttaaagaagagaaaagttaactgagaagctatgtgtttaaggaatagaatggtttaagttagtaactttggatgtttgggttatatataaac  864400                       <---------TOE1(3)                                                     <-------                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <---------TOE2(3)                    <---------MYB52(1)                                                    <---------TOE1(3)                <-----------------AGL1    --------->ANAC58      --------->YAB1            <---------YAB1            --------->ATHB51              --------->ANAC58 <---------YAB1               --------->YAB1            <---------AHL20(2)    <---------RVE1(1)   ----------->GT1                  <---------YAB1            <---------ICU4       --------->ARR11(3)  <---------TOE1(3)           --------->ZAT18            --------->AHL20(2)   <---------GLK1(2)   <---------YAB1              <---------ZAT18            <--------ATHB1       <---------ARR11(3)  <---------TOE2(3)        --------->ANAC58 -AHL20(2) --------->ICU4    ---------->DOF2  ---------->DOF2  ---------->ID1 --------->ANAC58 -----GT1--------->YAB1<---------TOE2(3)---------->DOF2 <---------YAB1      ---------->DOF2----------   tgcttcgacattaataatttcagttaaggcaaaaagatttttaaaagcaaaagttatggttattagtcgtaatcaacttcaagcacactattatggttat  864500                           <---------YAB1                            --------->ATHB12                         --------->YAB1                  --------->YAB1               --------->ANAC46                  <-----------GT1<----------DOF2                     x               --------->ANAC58                 --------->YAB1  <---------DAG2                -------               --------->AtLEC2        <---------At4g35610 ---------->DOF2                --------->YAB1 --YAB1        --------->ANAC58     ---------->DOF2--------->ZAT6   <---------YAB1       <---------YAB1 ->GT1       ---------->DOF2<-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->YAB1   tagttgaaatcaacttcaagcaaacatttatcactgtctaaagctcacatttatcactatcaaaagctttatcatttgtcaaaaaccatttatcacagtg  864600                                  <---------ATHB12                  <-----------GT1                                --------->WOX13(1)                  <---------AHL20(2)                        --------->AHL20(2)               <---------------AtSPL8          <-----------GT1          <---------ANAC46   --------->YAB1          --------->WOX13(1)                 <---------YAB1  --------->TOE2(2)  --------->AtMYB61              <---------AHL20(2)       <---------ATHB12 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <-----------GT1<-------TEIL  --------->WOX13(1)    ---- -->At5g28300    --------->MYB46(3)<---------ICU4   --------->AHL20(2) <----------DOF2--------->YAB1<   aaaacctatgtaacgtctatccaccaaaaaataacaatcaatgctatataacaattaatcaagtacatatttactttcaatcaaacatttatcactgtct  864700                              <---------ICU4                 --------->ANAC58                  --------->YAB1                             --------->ANAC58                    <---          <-----------GT1<---------DAG2                    ---------->DOF2                    -------         --------->YAB1  <----------DOF2               --------->At5g28300            --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->YAB1                 --------->AtMYB61 ------>DOF2--------->ZAT6   <---------YAB1       <---------YAB1              --------->MYB46(3)<---- ---------At4g35610 ---------->DOF2             --------->YAB1         <---------ANAC46    --------->YAB1   aaagctcacatttatcactatcaaaagctttatcatttctcaaaaaccatttatcacagtgaaaagctatgtaacgtctatccaccaaaaaaataacaat  864800  Previous    Next  AGI:  At4g01980.1    Description:  transposable element gene. similar to myb family protein [Arabidopsis thaliana] (TAIR:AT2G22710.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) Range:  from: 863351    to: 864259    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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