Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <-----------HVH21                                                                        --------->AtMYB61                                                                       --------->MYB46(3)                     <---------At4g35610                          --------->ARR14(2)                     --------->At4g35610                        <---------HSFC1(2)               --------->TOE1(3)                            --------->ETT(2)     ====================               --------->TOE1(2)                            --------->DEAR3(1)   <------ZmHOX2a(2)               --------->TOE2(2)                            <---------ETT(2)    --------->ARR11(3)               --------->TOE2(3)    --------->ANAC46        <---------DEAR3(1) --------->GLK1(1)    - ------->YAB1-------->P            -------->P    ------->GAMYB  --------->HSFC1(2)    --------->MYB52(1)   atcaaaacgaagactaaccttggagcttaagagagactaccccatcttcaacggagacaacgtcgacgtttccaccatcagagatcaagaacggtctaac  843100                <---------TOE2(3)             <---------ATHB12           ------>MYB46(1)           ------>MYB83         <---------MYB111(1)        --------->ANAC58                                               <-----------RAV1(2)        --------->ANAC58                                           <-------TEIL   ----------->GT1     --------->MYB46(3)              ---------->DOF2              --------->CCA1(2)        <---------    --------->ANAC58               --------->YAB1          --------->TOE1(3)     --------->DAG2    --------->ANAC58              <---------ATHB12        ----------->RAV1(2)  ---------->DOF2  ---------->DOF2            <------NtERF2    <---------At4g35610<---------ARR11(3)     --------->ARR11(3) ------>ZmHOX2a(1)          <-----------HVH21 <---------ZAT2     --------->ARR14(2)     <---------ARR11(3) =======HOX2a_HOX2a        ----------->GT1    --------->ZAT2     <---------ARR14(2)    <---------GLK1(1) -------->TOE2(3)          <---------ANAC46   --------->At4g35610--------->ARR11(3)    --------->GLK1(1)   atcctcaagcaccaaatcaacgttttgaggcgtcaaatcaaaagtctgagctgaatataaacctgaagatacaccagatgctaaaggtgatatcttttct  843200                                                 --------->CCA1(2)                                                --------->ARR11(3)          --------->ANAC58                         ----------->GT1        <---------ARR11(3)          --------->ANAC46                        ------>ZmHOX2a(2)  <---------HSFC1(1)        --------->ANAC58                       <------ZmHOX2a(2)   <---------HSFB2a(2)       --------->ANAC58                      --------->ARR14(2)   >>>>>>>ZML2   <---------ANAC46   --------->ANAC58 <---------WRKY18(1)  <---------ARR14(2)   --------->HSFB2a(2)   --------->ANAC46 -DOF2   --------->MYB46(3)                --------->HSFC1(1) --------->KAN4(2)   <---------LBD16   ccttgactcgaaccacttatcgcagatcggtgaaaaatcgccgttctagagatatgtctgcgtttattcgcaaacaagacgaaactcgggttttgatcag  843300                                                      --------------->AGL15                                                      <---------------AGL15                                                     <-----------------AGL2                                                     <-----------------AGL3                                                     ----------------->AGL3                                                     ----------------->AGL2                                                     ----------------->AGL1                                                     <-----------------AGL1                                                     <-----------------AG                                                 --------->HSFC1(2)                  ------>ZmHOX2a(1)              <---------At4g35610        --------->GLK1(1)                --------->GLK1(1)  <---------HSFB2a(2)       <---------SPL7        <---------GLK1(1)                <---------GLK1(1)  --------->HSFB2a(2)   --------->YAB1      <------ZmHOX2a(1)           <-----------GT1<---------HSFC1(2)         --------->ANAC58     --------->ANAC46       <---------YAB1       --------->HSFB2a(1)        --------->ANAC58   agattacaggaaacccattcctcgtcgaagatgatttaaccagaattctgaagcttccacttatggaagtcgcgagagaagccatcatcgttcgataatt  843400                                                             =====================================HOX2a_HOX2a                                                   --------->LBD16                                                  <---------ANAC55(2)                                                  <---------ANAC46                              <----                                                  --------->ANAC55(2)                         -------                                            --------->AHL20(1)                             <------ZmHOX2a(2)                    --------->At4g35610     --------->AHL20(2)                      <---------AHL20(2)               --------->WOX13(1)           <---------AHL20(2)      <---------AHL20(2)   <------ZmHOX2a(1)      <---------DOF5.7(2)                   <---------AHL20(1)      --------->AHL20(2)   ============     --------->WRKY38(1)      ---------->DOF2    <---------LBD16   --------->AHL20(2)---------->DOF2    --------->DOF5.7(2)   --------->ANAC58 <---------ATHB12 --------->TOE2(3)   <---------AHL20(2)    <---------MYB52(1)    --------->ANAC58 --------->AHL20(2)------>ZmHOX2a(1)  --------->AHL20(2) ------>ZmHOX2a(2)--------->YAB1      --------->GLK1(2)    *TSS--------->AHL20(2)   --------->AHL20(2)   tgatccgttaaccaaaacaatcagaagcacgataaagaagaatcaataaattgcggaatagtccttaaaattaatgagttttttaattaaaggatcagat  843500                                                                                                <----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                            <--------                                                                                            ---------                                                                                          ------->MYC4                                                                                          ------->MYC2                                                                                          <-------MYC4                      --------->MYB46(3)                                                  -------->ABF1                    ------>MYB83                                                          ------->MYC3                    ------>MYB46(1)                                                       <-------MYC2                  --------->MYB46(3)                                                      <-------MYC3                  <---------MYB59                                                        <---------ANAC55(2)                 --------->ANAC58                                                        ============                 --------->ANAC58                                                        ============                --------->PCF5                                                           <---------TGA1a                --------->TCP16(1)                                                       --------->TGA1a               <---------TCP16(2)                                                        <--------ABF1              --------->WRKY38(1)               <----------DOF2                          --------->O2              --------->ZAT14                  <---------ANAC46                          <---------O2              --------->WRKY12                 <---------ANAC58                          ============        <<<<<<<<<<<<<<<<<LFY                   <---------ANAC58                --------->MYB52(1)    ----------->GT1 ----------->RAV1(1) <---------AHL20(2)                   <---------MYB52(2)<----- --ZmHOX2a(2) <---------ZAT18           --------->AHL20(2)               --------->AHL20(2)--------->ALFIN1 -->At4g35610--------->ALFIN1           ----------->TBP                  <---------AHL20(2)---------- ==HOX2a_HOX2a<---------ZAT14     <------ZmHOX2a(2)            --------->MYB46(3)        --------->ANAC55(2)   cagaaaatgtaaacagtggacccaacaaatgggccgatcgatataaatggcttttactatgacgacccaatccatttaaacgaacggagacacgtgtcgg  843600          <---------ANAC58     --------->AHL20(2) ---GAMYB---------->ID1 ----MYB46(3) ---ANAC46<---------ANAC58                                       <---------AHL20(2) ---At1g77200                                                   <---------AHL20(2) ---HVH21--------------->AtSPL8                              --------->WOX13(1) --->AtMYB77                                                --------->AHL20(2) ===MYC_MYB                                     <-----------RAV1(1) ============================bZIP_DOF          <---------TOE2(3)--------->AHL20(2) ====MYC_MYB                               <----------DOF2 <---------ATHB12                  <------- ----DEAR3(2)     <----------DOF2     <----------DOF2    --------->WOX13(1)              <----------DOF2 ->HVH21<-----------GT1            <-----------GT1     <------ZmHOX2a(2) --------->ARR14(2)  <-------   ttaccaattttttcgttctcctttaagtgagtgagtttgacttttcttttatgttggatcaatcaattaaatccatatttgttttataagactttgcttc  843700                                        <---------ALFIN1                                        ----------->RAV1(1)                                        --------->AtMYB61                                       --------->MYB46(3)                                       --------->ANAC46                                      ------>MYB83                                      ------>MYB46(1)                                     <---------ALFIN1                                     --------->MYB55(1)                                     --------->ANAC46                                    <---------MYB55(2)                                    <---------MYB111(1)                                    --------->DEAR3(1)                                    <---------MYB111(2)                                    --------->MYB46(3)                                   ------>MYB83                                   --------->ANAC58                                   ------>MYB46(1)                                   --------->ANAC58                                 --------->AtMYB61                                 --------->DEAR3(1)                                 <---------ALFIN1                              --------->ANAC46       ----------->RAV1(1)    --------->ANAC58       --------->MYB52(1)     <---------ALFIN1                                            <---------GLK1(1)       ------------>AtMYB77   --------->REM1(1)                                  --------->ZAT6<-----      --------->ANAC46        --------->bZIP60(2)                       <---------ANAC55(2)    ------    --------->ANAC46          --------->ANAC58                          --------->ANAC55(2)   <------    --------->YAB1          <---------ALFIN1                            --------->ANAC46<---------ICU4 --ANAC58       ----------->RAV1(1)--------->ANAC46                  <---------SPL7     --------->ATHB12 --ANAC58      ----------->HVH21--------->MYB46(3)  <---------AHL20(2) --------->SPL7  <---------ATHB12   ttccaaacacaacagttgcgacagtgatggccacaccacccaccacagacatatttgattctgtccaattccatacgggactaacacaaatgatttctgc  843800                                                                          <---------WOX13(1)                                                                        --------->ATHB51                                                                        <---------ICU4                                  <-----------GT1                       <--------ATHB1                               --------->YAB1     <---------YAB1        --------->ATHB12                              <---------YAB1    --------->ATHB51        -------->HAHB4       --------->AHL20(2)    <---------AHL20(1) <---------ICU4         --------->ICU4       <---------AHL20(2)    --------->AHL20(1)<---------YAB1          <---------ATHB51     <----------DOF2         --------->AHL20(2)--------->ICU4          <---------YAB1     --------->TOE2(3)      --------->YAB1   --------->YAB1          --------->YAB1 ----At4g35610         --------->ANAC58   --------->WOX13(1)      ----------->GT1          <---------ARR11(3) --->At4g35610         --------->ANAC58 <---------YAB1         --------->DAG2              <<<<<<<<<<GT-1 -----RAV1(1)  <----------DOF2<---------AHL20(2)<--------HAHB4---------->DOF2     ---------->DOF2   -   tgtacaactttaattttcttttaagacgaaatataataacatatcattcattattacacatacaaaaagtgtaataattgacttaaaagtctatatcatt  843900                                       --------->ALFIN1                <--------HAHB4       <---------TGA1a               --------->SPL7                <---------ICU4       --------->TGA1a               <---------ZAT14                --------->ATHB12     ============================bZIP_DOF     <---------TOE2(3)               --------->ICU4        --------->O2                  --------->ZAT18         <-----------GT1   <---------AHL20(2)         <---------DAG2  --------->At5g28300   <----------DOF2        --------->AHL20(2) <---------WOX13(1)<---------------AtSPL8   ============================================bZIP_DOF        <---------------AtSPL3           ----- --------->ID1 <---------YAB1        <---------O2     <----------DOF2----------->GT1         <-------   ttgtacttttgtaactgatcattagaaattttataactcaagtgtcgattgactaacttttttatcgagtacggtatattaagaattgatttttgttcac  844000  Previous    Next  AGI:  At4g01940.1    Description:  NFU1 (NFU domain protein 1). Identical to NifU-like protein 1, chloroplast precursor (NIFU1) [Arabidopsis Thaliana] (GB:Q93W77;GB:Q9SYJ1); similar to NFU2 (NFU domain protein 2) [Arabidopsis thaliana] (TAIR:AT5G49940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40148.1); contains InterPro domain NIF system FeS cluster assembly, NifU, C-terminal; (InterPro:IPR001075) Range:  from: 841989    to: 843459    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version