Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ------>ZmHOX2a(2)                        <------ZmHOX2a(2)            <---------MYB111(2)     --------->AtMYB61 --------->ARR11(3)    --------->MYB46(3) <---------ARR14(2)   -------->P ------>MYB83                 --------->YAB1  --------->WOX13(1)   <---------ARR11(3) <---------YAB1  <-----------GT1      --------->ARR14(2)--------->ARR11(3) ---------ATHB12      <------ZmHOX2a(1)  <---------ARR11(3) --->MYB83  <---------MYB46(2)          --------->YAB1                            ---------->DOF2   - --->MYB46(1) ------>MYB46(1)          --------->ICU4                         ----------->GT1       < -----MYB59--------->ANAC46          --------->YAB1<-----------GT1           <---------TOE2(3)     <- ----GT1--------->MYB46(3)     --------->ZAT6 --------->AHL20(2)           ---------->DOF2       <---   aaatcaaccactcaccaaactagaggatccctaacacaaaaatgatcataaattttctatccacatatgtttcaagttaaaggtaaaagtcaaccttctt  821100                            ------>ZmHOX2a(1)                            <-----------HVH21                     --------->ARR11(3)                     <---------GLK1(2)--------->ANAC58                     <---------ARR11(3)       --------->ARR11(3)  ------>ZmHOX2a(2)  --------->ARR14(2)    --------->DAG2  =================================HOX2a_HOX2a<---------ARR11(3) -------->ARR14(2)   <---------ARR14(2)   ---------->DOF2 ---------ARR14(2) ----------->ARR10  --------->ANAC58                 <---------GLK1(1) -----ZmHOX2a(1) ---------->DOF2      --------->ANAC46          ------->TEIL                   ------ ------TOE1(2)----------->GT1        --------->LBD16   <-----------HVH21        --------->GLK1(2)   -   aggatcgacttgaagaaggtaaagatactccttcacatccacgaaaaagttcttcaatgtcaattgtacctagaaatcagagaatcgatttcatcacaaa  821200                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                --------->YAB1                                                                              <---------ARR11(3)                                                                              <-----------ARR10                        --------->ATHB12                                      --------->ARR11(3)                       <---------ATHB12                                       --------->ARR14(2)       --------->ARR11(3)                                                     <---------ARR14(2)       <---------ARR11(3)                                                     --------->GLK1(2)       --------->GLK1(2)<---------ICU4                                       <---------GLK1(2) --------->At5g28300   --------->ICU4         ------>MYB46(1)             --------->HSFC1(1) ---->DOF2             <---------YAB1     >>>>>>>>>>MYB80                 <---------HSFB2a(2)      -- ---------->GT1 ---------->DOF2<-----------GT1------>MYB83                --------->HSFB2a(2)     ---   agcagtaaaaatctacataaaagtaatgatttttcacaagttcaaaccaaattgcctaagaaaatgagaaaattttcgagaatcttcatcacccaaatga  821300                                                         --------->YAB1          <----------DOF2                                <-----------GT1         ------>ZmHOX2a(2)                            --------->YAB1        <------ZmHOX2a(2)                             <---------ICU4                          <------ZmHOX2a(2)        <---------RVE1(1)                            <---------YAB1                          <-------       --------->ARR11(3)                          --------->YAB1                 ----------->RAV1(1)       --------->AGP1                             ----------->GT1               <---------ZAT14       <---------ARR11(3)                         <---------YAB1                --------->ZAT14<-----     ----------->ARR10                     --------->At4g35610           --------->WOX13(1)  -------- ------->DAG2                <---------ARR11(3) <---------At4g35610    <---------YAB1        <------- ------->DOF2            ---------->DOF2   <---------At4g35610        <-----------GT1        --------   aaaagttgagatctttatgggaagagagaaagacctgatcaagtttgctgagatgataataacaagttgatttatcaatctctgcaccataagaagatcc  821400                                  <---------GLK1(2)                                --------->ICU4                            <---------SPL1(2)                            <---------SPL7                           --------->ANAC55(2)                                      <-----------HVH21                           <---------ANAC58                                        <---------ZAT6 --ARR14(2)                <---------ANAC46                               --------->TOE1(3) --TEIL   XXXXXXXXXXXXXXXXXXXX>MIR783 <---------ANAC46                    --------->TOE2(3)        -- ->ARR14(2)                <---------ANAC55(2)         ------>ZmHOX2a(1)  <---------DAG2   ---------- --ARR11(3)                <---------ANAC58    ------->TEIL   --------->ICU4       --------->ALFIN1-- ->ARR11(3)               --------------->AtSPL3      --------->TOE2(3)<-----------GT1    <------ZmHOX2a(2)   attcttcttaaactcttcccattcttgttccgtactgattctgtatatgaactcttcctcagccatttttgtttcaccttaaccagtgtgagatcgaaaa  821500                                                    <---------ZAT14                                                  --------->ANAC46        ===============================================bZIP_DOF                  --------->ZAT14     --------->TOE2(3)                         --------->ZAT14                 --------------->AtSPL3     *TSS  <---------At4g35610                 <---------ZAT14          ------------>CBF     <----------DOF2                         --------->bZIP60(2)        <---------ATHB12     --------->TOE1(3)                       --------->TGA1a          <---------GLK1(1)     ==================================================bZIP_DOF       --------->GLK1(1) --------->GT1                               --------->O2        <---------LBD16 <---------ZAT14 ->GT1  ---------->DOF2                    <---------ALFIN1<------ZmHOX2a(2)   --------------->AtSPL8 ------->YAB1                      <-----------HVH21--------->ZAT14--------->LBD16   atcgtaactttaaagcagacttgattcgattccattccatcagagccacttcactaaaccgatctaaaccggaaatcaatttctgtactaaaccggtttt  821600                                              <-----------GT1                                           <--------ATHB1                                           --------->YAB1                                           --------->ATHB51                                           <--------HAHB4                                           <---------ICU4                                      ------                                          --------->ICU4                             <------MYB46(1)                                          <---------ATHB12                           ----------->GT1                   <---------WRKY12       --------->AHL20(2)                         <------MYB83                  --------->DOF5.7(2)     <---------ATHB51             <---------MYB46(3)      <-----          ------>MYB83                ------------>CBF          <----------DOF2      *TSS     <------ZmHOX2a(1)          ------>MYB46(1)        <---------ALFIN1           <------NtERF2           <---------MYB46(3)       --------->DEAR3(2)     <---------ARR14(2)          <---------DEAR3(1)       <---------MYB52(1) --------->At4g35610          --------->ARR14(2)     ------>ZmHOX2a(1)<---------AtMYB61 ---------->DOF2   attagctaaaccgactcgtcgtcaacttcgaagttccacttccaataattacctccttcgtcgtcgctttcgatggtcgaaatcagttggtaaagaggaa  821700                                         <------NtERF2                                        <-----------HVH21                                        ------>NtERF2                                       <---------bZIP60(1)                                       <---------ANAC46                                      --------->ATERF1(1)                                      <------NtERF2                                      --------->RRTF1(1)                                      --------->RAP2.3(1)                                     ------>NtERF2                                     <---------ATERF1(1)                                     <---------RAP2.6(1)                                     <---------ERF1                                     <---------ORA47(2)                                     <---------RAP2.3(1)                                     <---------RRTF1(1)                                    <---------RRTF1(3)                                    <---------RRTF1(2)                                    <---------RAP2.3(3)                                    <---------RAP2.3(2)                                    <---------DEAR3(1)                                    <---------RAP2.6(2)                                    <---------DREB2C(2)          ----------->GT1           <---------ANAC46          <---------ZAT6           --------->RAP2.6(3)          <---------ANAC46     --------->YAB1   ---------->DOF2             <---------ICU4----------->TGA1                              ---------- --->ARR14(2)                  --------->ATHB12                                          ------>ZmHOX2a(2) ----ARR14(2)               --------->YAB1   <---------ATHB12   <---------ARR11(3)   <---------YAB1   actctgaaagttgtgttaaaaaaaaaactagaatcatggcggcgtcaatgacgaaacccatctcaataacttctctcggtttctattctgatcgaaagaa  821800                                               ------>NtERF2                                  <------                                              <---------ETT(1)                                <------                                              --------->LBD16                              ------->GAMYB            <---------WOX13(1)               --------->HSFB2a(2)           <-----------HVH21  <------          --------->ATHB12       <---------ARR14(2)                     ---------->DOF2 --------->YAB1   <----------DOF2               --------->ARR14(2)               <------MYB83<---------At5g28300  <---------ANAC58            --------->HSFB2a(2)                 <------MYB46(1)       <-----------GT1  <---------ANAC58            <---------HSFB2a(2)         <-----------------AGL1     --------->YAB1 >DOF2   <---------YAB1      <---------LBD16 <---------HSFB2a(2) --------->MYB59  ----------->GT1   cattgctttctctgattgcatttcgatttgttctggattcagacattcccgaccatcttgcctcgatttggtcacaaagtcaccgagtaataacagtcgt  821900                                      ----------->RAV1(1)                                      --------->MYB52(1)                       <---------ARR11(3)                       --------->ARR14(2)                       --------->ARR11(3)               --------->ZAT18    --------->ANAC58                                     <---------ANAC58        <---------MYB46(3)   <---------HSFB2a(2)                                     <---------ANAC46   ----------->RAV1(2)--------->CCA1(1)       --------->ICU4         <------ZmHOX2a(2) <---------ANAC58 <-----------GT1      --------->RVE1(1) --------->ZAT6      <----------DOF2 <------MYB46(1) ---ANAC46     <---------ZAT18    --------->ANAC58          ------>ZmHOX2a(1)     <----------DOF2 ---ANAC58  --------->MYB52(2)  <--------P  --------->YAB1  ================HOX2a_HOX2a<---------ANAC46 ---ANAC58<---------MYB52(1) --------->HSFB2a(2)          ------>ZmHOX2a(2) <------MYB83   gttttacctgtcgttagtgcccaaatatcttctggtaagccaacagtaatgagtctctgatccttttttcgatcaatttggtttcttttgtgtgttcata  822000  Previous    Next  AGI:  At4g01897.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO40169.1); contains InterPro domain Protein of unknown function DUF952 (InterPro:IPR009297) Range:  from: 820336    to: 821505    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01900.1    Description:  GLB1 (glutamine synthetase B1). similar to PII protein [Ricinus communis] (GB:AAC78332.1); contains InterPro domain Nitrogen regulatory protein PII; (InterPro:IPR002187); contains InterPro domain Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal (InterPro:IPR015867); contains InterPro domain Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322) Range:  from: 821685    to: 823523    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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