Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                                      <-----------ARR10                                      --------->ARR14(3)                                      <---------ARR14(2)                                      --------->ARR14(2)                                      <---------ARR14(3)                                      --------->ARR11(3)                                 <---------At4g35610                                      <---------ARR11(3)                                 --------->LBD16                                      --------->AGP1                                     ------>NtERF2                                     --------->RVE1(1)                                   --------->At4g35610                                    ----------->ARR10                               <----------DOF2                                  ---------->DOF2                                <---------ARR11(3)                                --------->YAB1                                   --------->ARR11(3)                               <---------ATHB12                                 <---------CCA1(2)                             --------->WOX13(1)                             --------->ANAC55(2)       <---------ZAT2      <---------ATHB12                     <-----------GT1------->TEIL--------->DEAR3(1) -----------GT1          --------->WOX13(1)                    ----------------------->TaNAC69(2) >LBD16--------->ZAT2   --------->MYB46(3)    <----------DOF2<---------ICU4 <---------ANAC55(2)     -   tttcaccagagctcgaagctaattcaacaatcaatgaaaagatcttcactttcttctctccaaatattacaagtttatacgtatatctttccgccgaatg  807700                                                                                               <-----                                                                                   --------->YAB1                                                                        --------->LBD16        <-----                                                                       --------->ANAC46       -------                                                                       --------->ANAC58       -------                                                                       --------->ANAC58       <------                                                                       --------->LBD16       --------                                                                      <---------LBD16        <-------                                                                      --------->LBD16  --------->DAG2                                                                     <---------LBD16  ---------->DOF2     <----------DOF2   <---------ANAC46                       <---------ATHB12     ----------->GT1 --------->DOF2        <---------AtLEC2                  <------ZmHOX2a(2) --------->GLK1(1) <-------   aacaaagcttttgctacaaacagttccatggacgcgaactccctcaaacacttgaaacgatcgaatcaattccccggaactcaaatcgtaaagcagaatc  807800       <---------ARR14(2)       --------->ARR14(2)     --------->LBD16   <---------LBD16 --------->ARR14(2) <---------ARR14(2)                                                                      --------->MYB52(1) ----HSFB2a(1)                                                                         ----------->HVH21 ----GLK1(1)                    <---------ICU4                                         --------->ZAT18 -->ARR14(2)             <-----------GT1                                             --------->At4g35610 -->GLK1(2)         <---------AHL20(1)                                               <---------At4g35610 ---ARR14(2)        --------->AHL20(2)                                        <---------ANAC58 ->ARR14(2)         <---------AHL20(2)                                        <---------ANAC58     -- --ARR14(2)         --------->AHL20(1)            ----------->RAV1(1)   <---------ARR11(3) --------->DEAR3(1) --GLK1(2)         --------->AHL20(2) --------->TOE2(3)                 --------->ARR11(3)--------->DEAR3(2)   tccgaaccggaacctatttgaataaattaacccctaattacatcaaaaactccaacaaaaatttgaaaaacaaagatttatcgtgagagctcaccggcga  807900                                                                             --------->ALFIN1                                                                             ----------->HVH21   <---                                                                           <---------ANAC46      ----                                                                           <---------O2          <---                                                                           ==========================                                                                           <---------ANAC58      <---                                                                           <---------TGA1a      <----                                                                           <---------ANAC58     <----                                                                           --------->TGA1a      <----                                                                           --------->O2         -----                                                                       --------->DEAR3(2)       <----                                                                      ------->TEIL             ------                                                                 --------->CCA1(2)             <-----                                                                --------->ARR11(3)             <-----                                                                --------->ARR11(1)             <-----                                                                --------->ARR14(2)             <-----                                        --------->ANAC58        <---------ARR11(3)            -------      <------ZmHOX2a(1)                 --------->ANAC58        <---------ARR14(2)           <-------    --------->ANAC58                  ===============================================bZIP_DOF------>NtERF2    <---------TOE2(3)                 ---------->DOF2        --------->HSFB2a(2)             --------    --------->ANAC58                 <------ZmHOX2a(1)       <---------HSFB2a(2)             <-------  --------->CCA1(2)                <---------TOE2(3)         ------>ZmHOX2a(1)             <---------LBD16 --------->ARR11(3)        <------ZmHOX2a(1)                <-----------------AGL3    <---------ALFIN1 --------->ARR10         <---------TOE2(3)                  <-----------------AGL2 <---------TCP20   gaagataaggaattgaagaaacatgttgaggaagattgaggaaagctagagaagagacttctcctagatatggaccggcgtgagggttccacttccggcg  808000                                        ------>NtERF2                                       --------->DEAR3(1)                                      <------NtERF2         --------->ANAC58            <---------ATERF1(1) ----GAMYB                           ------>NtERF2 ----->At4g35610                    --------->ARR14(2) ------At4g35610                    <---------ARR14(2) ====MYC_MYB                       --------->ATERF1(1) ---NtERF2--------->LBD16          <---------At4g35610 -----MYB46(3)                    <---------ATERF1(1) -----ERF1------>NtERF2           <---------RAP2.3(1) -----ATERF1(1)                  <---------DEAR3(1) ->NtERF2--------->ANAC46        <---------RAP2.6(2) -----RAP2.3(1)                 --------->RAP2.6(3) --->ATERF1(2)                  <---------ZAT18 ----RAP2.3(2)                 --------->ALFIN1 ----RAP2.3(3)            ----------->RAV1(1) ----ATERF1(2)           --------->ANAC58 ----DEAR3(1)            --------->ANAC58 -->ATERF1(1)            ----------->HVH21      --------->TGA1a                         --------->YAB1 --RAP2.3(1)      <----------DOF2<---------RAP2.3(2)                      --------->ANAC46 ->LBD16 --------->ANAC58--------->ANAC46     ------>NtERF2 *TSS      ----------->RAV1(1) --ATERF1(1)      ========================================bZIP_DOF --------->ANAC46------------>CBF   gctgttttcttccgccatagctttgctacgacagtgcggctccgactccgacttgagttcaaagtttagaggcaacacaaaactttgcaatagtagtcaa  808100                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 <---                  ------->TEIL                                                                   ----                ------->GAMYB                                                                    <---            <---------WRKY38(1)                 <----------DOF2                                  <---            <---------WRKY12             --------->CCA1(2)                        <---------------AtSPL8            <---------WRKY45            <---------ARR14(2)<---------TOE2(2)       --------------->AtSPL8  ----------------->AG                  --------->ARR14(2)<---------TOE1(2)  <----------DOF2 --------   actttccaagtgagtcaacgagcctcgaacatttgggcttcatatatgggcttttagtcgcatgttaatgggcttaatgctttttatgtacaaaatcaaa  808200                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                          -----------                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        --------->ANAC46                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        --------->ANAC58                                                                                        --------->ANAC55(2)                                                                                        <---------ANAC55(2)                                                                                        --------->ANAC58                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       --------->TOE1(2)                                                                                      xxxxxxxxxxxxxxx                                                                                      <---------ALFIN1                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  ------>ZmHOX2a(2) <                                                                                <---------ARR14(2)  -                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             --------->ALFIN1  <-----         ---------->DOF2                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)        <------ZmHOX2a(1)                                                   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->ANAC58                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->ANAC58                                                    <---------ANAC58  <xxxxxxx ------ATHB1                                                               <---------ANAC46  <xxxxxxx ------>ATHB51                                                           <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->HAHB4                                                             <xxxxxxxxxxxxxxxxsmallRNA(s) ------>ATHB12                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)< -------ICU4                                                           <xxxxxxxxxxxxxxxxsmallRNA(i) - ----->ICU4                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)<- ------AHL20(2)                                                        --------->ALFIN1xxxxxxxxxxxxxx ----->AHL20(2)              --------->ZAT18                           <xxxxxxxxxxxxxxxsmallRNA(si3)- ------ATHB51           ---------->DOF2                         ---------->DOF2<xxxxxxxxxxxxxxxxxxxxx ------ATHB12     <---------ZAT14         --------->DAG2    --------->DAG2 <---------ANAC58 ------>NtERF2 ->AHL20(2)      <---------ANAC46        ---------->DOF2   ---------->DOF2 <xxxxxxxxxxxxxxxxsmallRNA(s)   taattgagcaggaaagagagcgtagagaaagggcccaatactaaaaagttagacaaacaaaaaaagtaatgcggtgagcgtggatcgaacacgcgacctt  808300                            <---------At4g35610                            --------->At4g35610                           <xxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxsmallRNA(le3)                           <xxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxsmallRNA(si3)                         <xxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                       ----------->RAV1(2)                       <---------ZAT2      ---------->ID1                       --------->ZAT2  <----------DOF2  <xxxxxxxxxxxxxxxxsmallRNA(i)         ==============================bZIP_DOF  ------>ZmHOX2a(2)    <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) <------ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----------ARR10      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------ARR14(3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->ARR14(3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------GLK1(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2) >HVH21   ----------->HVH21<xxxxxxxxxxxxxxxsmallRNA(le3) xxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xx>smallRNA(fl3)     --------->MYB52(1)  *TSS<---------YAB1 xxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxsmallRNA(fl3) xxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         ------->TEIL xxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ------->MYC4 xxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <-------MYC4 xxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-------MYC2 x>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ------->MYC3 xxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <-------MYC3 ---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ------->MYC2 -------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC55(2) ------HVH21       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <--------ABF1 xxxxxxxxxxxxxxxsmallRNA(se3)      <---------LBD16------------>CBF   ----------->TBP xxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)----------->HVH21 ---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC46 -------->AGP1    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->O2                --------->AHL20(2) --------CCA1(2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ANAC55(2)         <---------AHL20(2) xxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------O2<---------AHL20(2)<---------YAB1 -------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    --------->TGA1a          ------->TEIL xxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------TGA1a        <-------TEIL   cagatcttcagtctgacgctctcccaactgagctatccccgctttgttgttattcaatgacacgtgtacttatataatgctaaatgcatttatttttgtt  808400                                                                                        --------->ANAC46                                                                                    --------->GLK1(1)                                           <---------------AGL15                    <---------GLK1(1)                                           <----------DOF2                       --------->ANAC58   -                --------->DAG2     <---------YAB1                                --------->ANAC58----               ---------->DOF2   <---------ICU4         <----------ID1    --------->GLK1(1)     <----           --------->AHL20(2)   --------->ICU4          ----------->GT1   <---------GLK1(1)     -----   <------------CBF         --------->TOE2(3)        ---------->DOF2     --------->ARR11(3) --------- <---------AHL20(2)        <---------ANAC55(2)--------->YAB1             <---------ARR14(2)--------->MYB52(1)   tgttttattgaaataaaaaaagcgagattacataaatatgacagtcttttataagaaaaggagaaatcgcattcagatatcgcaagaaatccacaacggc  808500                                                                                     <------ZmHOX2a(1)                                                                                --------->O2                                                                                --------->ANAC58                                                                                --------->ANAC58                                                ------->GAMYB                   --------->TGA1a ----->ZmHOX2a(1)              <---------WRKY18(1)                              <---------O2 -->NtERF2                  <---------ICU4      ==========================================MYC_MYB -----ARR14(2)        <-----------GT1         ----------->RAV1(2)               <---------TGA1a ---->ARR14(2)   <---------ANAC58             --------->At4g35610    <---------At4g35610 >RAP2.6(3)      <---------ANAC58             <---------At4g35610    --------->At4g35610   tcctcaaactgaccttcaagcttgtcaccatcttgaccgttcaaattcaactgactcaaatccaattcatcagcagtatgccacgtaggagtcccatctt  808600  Previous    Next  AGI:  At4g01860.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G21540.1); similar to hypothetical protein OsI_009483 [Oryza sativa (indica cultivar-group)] (GB:EAY88250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40187.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93606.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 801345    to: 808060    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01865.1    Description:  pre-tRNA. tRNA-Phe (anticodon: GAA) Range:  from: 808270    to: 808342    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01870.1    Description:  tolB protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40178.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71280.1); similar to hypothetical protein OsI_026083 [Oryza sativa (indica cultivar-group)] (GB:EAZ04851.1); contains InterPro domain WD40-like Beta Propeller (InterPro:IPR011659); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 808376    to: 810446    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version