Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               ------>ZmHOX2a(1)            --------->TOE2(3)    ------->GAMYB   ------>ZmHOX2a(1)   <---------At4g35610   <---------MYB52(2)    --------->ARR14(2)                                                        <-   --------->MYB46(3)    <---------ARR14(2)                     <-------TEIL                --------- ----GLK1(2)--------->TOE1(3)           --------->At4g35610---------->DOF2         <------ZmHOX2a(1)   tttcaacaaacaatccttagtccttagtatcccctaaaattcagctcaaaatatcaaaaaacaaagttcatagaaaaaaaaaacaggacaattccgaagt  780000                                                                     --------->LBD16                                                                 --------->GLK1(2)                                                      ----------->RAV1(1)                                                      --------->ORA47(1)                                                     --------->At1g77200                                                     <---------ETT(1)--------->At4g35610           --                                                     --------->DEAR4(1)                          <---                                                     --------->DEAR3(1)                          ----                                                     --------->DREB2C(2)                        -----                                                 --------->MYB46(3)<---------LBD16              -----                                                 <---------ATHB12<---------ARR14(2)            ------                                         <---------ANAC58    --------->YAB1                <---------ARR11(3) --------YAB1                            <---------ANAC58   <---------ATHB12----------->GT1--------->ARR11(3) >LBD16  --------->ANAC46  <-----------GT1     --------->WOX13(1)--------->ARR14(2)        <---------   tatacttctaaacgatactaaacccaaaatcaccaattcgttttcgtttcaatcaccgacaaatcaaaatccgcagaagtgtatatcaactaaaatctac  780100                            --------->TOE2(3) -------->DOF2              --------->TOE1(3) ------------AGL15        <---------ARR11(3) ----------->AGL15        --------->ARR11(3)                                     >>>>>>>>>TBF1 ---->ANAC46              --------->GLK1(2)                                   >>>>>>>>>TBF1 ------------>AGL2  ----------->GT1                               <---------GLK1(1)                 - -->P              --------->DAG2    --------->WOX13(1)           --------->GLK1(1)           ------- --ARR10         ---------->DOF2    ---------->DOF2<---------TOE1(3)       >>>>>>>>>TBF1  <------ZmHOX2a(1)   ccaaagtagacataaaaacaaaaggcaaaatcttaaaatcaagcagagaagttagggtatgaaaacagaaatctgaagaagaagaagaagcaggaataaa  780200                                      <------ZmHOX2a(1)                                       <------        --------->TOE2(3)   <---------HSFC1(1)                                                <------        --------->TOE1(3)   <---------HSFB2a(2)          <---------ARR14(2)                  <-------       ----------------->AGL1       --------->MYB59 --------->ANAC58                         --------       ----------------->AG --------->HSFB2a(2)     --------->ANAC58                        <--------  <---------YAB1        <---------ARR14(2)   >>>>>>>>>TBF1 <-------TEIL        --------->ANAC58 ---------->GT1         --------->ARR14(2)>>>>>>>>>TBF1  --------->ARR14(2)    --------->ANAC58 -->YAB1<---------------AGL15     --------->ICU4>>>>>>>>>TBF1        ------->TEIL        --------->YAB1   aattgtgataccttaatcggagagacgattcgagaaattaggaagaagaagaagaagcaaattcgtagacgaatttttgactcgcattgaatcgtagctt  780300       ----------->HVH21 ==============================HOX2a_HOX2a                         <---------ANAC58 <------ZmHOX2a(2)                                                 <---------ANAC46             ----- ---ANAC58                                                <-----------GT1       <---------MYB52(1) ---ANAC58                            <---------YAB1   *TSS        <---------ANAC58         --------- --At4g35610                         <-----------GT1  <----------DOF2    <----------DOF2<-----------GT1 ->At4g35610                     <------------------------ANAC81   --------->ALFIN1  <---------ICU4 -TOE1(2)               ------>ZmHOX2a(1)    <-----------GT1      <-------TEIL --------->TOE2(3)-----   acgatccctctcacccagtactactcctctcgattctattttcattttttcattttcttttaactcgatgcgtggcattttcgttaatatttacacttaa  780400                                                                                              -------                                                                                              <------                                                                                              =======                                                                                              =======                                                                                              =======                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                            <--------                                                                                           ----------                                                                                   --------->ZAT18                                                                                   <---------ZAT14                                      --------->ATERF1(2)                          <---------ZAT18                                      <---------ATERF1(2)                          --------->ZAT14                                     <---------ANAC46                             <---------ALFIN1                                     <---------ANAC58                            --------->ZAT2  ----                                    <---------ZAT2                               <---------ZAT2------                                    --------->ZAT2                               <------NtERF2<------                                 <---------ANAC58                                <---------At4g35610                             ------->MYC2                                        --------->At4g35610                             ------->MYC3      ----------->GT1                  ------>NtERF2 <------                             <-------MYC3      ------>ZmHOX2a(2)               --------->ATERF1(2)                             <-------MYC2  --------->ICU4                   ------->GAMYB  ----------                            <---------ANAC58   --------->YAB1               =========================      <------------CBF      <---------ANAC58 <---------ARR11(3)     <---------AHL20(2)   <---------AtLEC2     --------->ATHB51      ------->MYC3 <------NtERF2              --------->AHL20(2) --------->ANAC46     --------->ATHB12      <-------MYC3------>NtERF2         <---------MYB46(3)<---------ATERF1(2) --------->REM1(1)     --------->MYB46(3)  <---------YAB1    ----------->GT1========================= ---->ANAC58          -------->P <---------ANAC58        --------->ATHB12  --------->MYB46(3) ------- >ANAC46           <---------MYB52(2)<---------ANAC58--------->ARR11(3)   --------->At4g35610 <------ ---->ANAC58     <-----------GT1 <---------ANAC46    <---------ARR11(3)   <---------At4g35610--------   gctacaactattggtcatttcactaaccacgcgtgccttgctggcatgatcgtaatatctcattggttataaaatcaactgccagcacactgcatgacgt  780500         <---------TGA1a         --------->TGA1a         <---------O2         =================================bZIP_DOF         --------->DEAR3(1)         --------->bZIP60(1)      =============MYC_MYB      ------->GAMYB      --------->DEAR3(1)     --------->MYB46(3)     --------->DEAR3(2)   <-----------GT1   --------->MYB52(1) -->bZIP60(1) ---O2----------->HVH21 =========================================bZIP_DOF ==================bZIP_bZIP =============MYC_MYB ---ANAC55(1) -->ANAC55(2) ---bZIP60(1) ---ANAC46 ---ANAC58                                            ----------->GT1 ---ANAC55(2)                                        <------------MYB.PH3(1) -TGA2(2)<---------bZIP60(1)                       --------->MYB52(1) ->HVH21 <---------bZIP60(2)                    --------->ANAC58 ------->GT1                                    --------->ANAC55(2) --------------->WRI1                           <---------ANAC55(2) ---TGA1a--------->bZIP60(2)                    --------->ANAC58 ---ANAC58<-----------HVH21          <---------RAP2.6(3)                   --------->bZIP60(1) ->TGA1  --------->ANAC46           --------->RAP2.6(2)                    <---------O2 ==================MYC_MYB     ---------->DOF2--------->MYB52(1)           --------->O2  <-----------GT1 ===MYC_MYB           --------->ARR14(2)    <---------MYB52(2)   --------->LBD16  <---------DOF5.7(2) -->O2--------->TOE2(2)--------->GLK1(2)   <---------ANAC55(2)  <---------HSFB2a(2) --------->ZAT6<-- ---bZIP60(2)         <---------ARR14(2)   --------->ANAC55(2) <---------LBD16  --------->DOF5.7(2) --->STF1--------->O2 <---------GLK1(2)  --------->ICU4--------->At5g28300 <---------bZIP60(1)   <---   ggtattaaccgacgtcgcatttcagattctctccaaagccgaaataagtaacgtaacggttaaattcgggagaaacgacgtcgttaacaataaaccttgt  780600                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                -----                                                                --------->YAB1         --------->At4g35610                             <----------DOF2    <---------------AGL15                  <---------At4g35610                            --------------->AGL15  <---------ICU4                 --------->TOE2(3)                            ====================================MADS_MADS      --------->RVE1(1)<----       <XXXXXXXXXXXXXXXXXXXXMIR399B/C           --------------->AGL15          --------->CCA1(1)----- ---------->DOF2       --------->HSFC1(2)       --------->ANAC55(2)        --------->AHL20(2)   ----- -----GAMYB            <---------HSFC1(2)  <----------DOF2      --------->TOE2(3) --------->TOE1(3) ------MYB46(3)<----------DOF2        ---------->DOF2 --------->YAB1       <---------AHL20(2)  ------   ggttaaagaccaattttcttttggtaacttccttttttgtcaaagcttttacataattagaaacaatgttagtataaaaaaataccttaagctcaaaata  780700        <------ZmHOX2a(1) ------AHL20(2) -----ARR11(3) -----AHL20(1) ---->AHL20(2)                                                            --------->ANAC46 -----AHL20(2)            <---------ANAC58                          --------->YAB1 ---->ARR11(3)            <---------ANAC58                   --------->ANAC58 ---->AHL20(1) <------ZmHOX2a(1)                             --------->ANAC58                  <----- --->AHL20(2)<---------TOE2(3)       ---------->DOF2        --------->TOE1(2)<---------ALFIN1<-------   tattttgagaggacttaggaaaacaattgtttgtcaactagaagcactaatgtgaagttgaacaagcgaagcataaacaccaccttcgatattgatcaac  780800                                                    <-----------bZIP910(2)                                                   --------->TGA2(2)                                                  <-----------TGA1                                                  <<<<<<<<<<<AtbZIP1                                                 --------->TGA1a                                                 --------->TGA2(1)                                                 <---------TGA1a                                                 <---------ANAC55(2)                                                 <---------TGA2(1)                                                 <---------bZIP60(1)                                                 <---------O2                                                 ================================bZIP_DOF           ================================================bZIP_DOF           <----------DOF2                       --------->bZIP60(1)      <---------PCF2                             --------->O2     <---------ANAC58                           ----------->STF1     <---------ANAC58                          <---------TGA2(2)    --------->SPL7                            ----------->HVH21 <---------ANAC46                             ----------->TGA1         <---------GLK1(1)          <-- <---------ANAC58                     <---------ALFIN1                ---------->DOF2            ---- <---------ANAC58                  <---------WRKY18(1)--------->At4g35610                       <---- ----TOE2(3)                  <---------MYB52(1)<-----------STF1 ------>ZmHOX2a(2)          <-------- --WRKY38(1)          <------ZmHOX2a(2)<---------LBD16<---------At4g35610    <-----------HVH21-------   gtttcgtgcgtccctttctctacgatcacaccgttcttgaccacggctatgacgtcagcattcttgatcgtggaaagcctgtgagccactactactgtgg  780900  Previous    Next  AGI:  At4g01810.1    Description:  protein transport protein-related. similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to hypothetical protein OsI_001607 [Oryza sativa (indica cultivar-group)] (GB:EAY73760.1); similar to hypothetical protein OsJ_001490 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11665.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40230.1); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain 4Fe-4S ferredoxin, iron-sulphur binding; (InterPro:IPR001450); contains InterPro domain Range:  from: 776488    to: 780355    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01820.1    Description:  MDR3/PGP3 (P-GLYCOPROTEIN 3); ATPase, coupled to transmembrane movement of substances. Identical to Putative multidrug resistance protein 3 (MDR3) [Arabidopsis Thaliana] (GB:Q9SYI2;GB:O49749); similar to PGP11 (P-GLYCOPROTEIN 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02520.1); similar to PGP5 (P-GLYCOPROTEIN 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT4G01830.1); similar to PGP12 (P-GLYCOPROTEIN 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02530.1); similar to unnamed protein product [Vitis vinif Range:  from: 780734    to: 785329    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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