Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ------->GAMYB         <---------At4g35610         --------->HSFB2a(1)         <---------HSFC1(2)         --------->HSFC1(2)         --------------->AGL15         <---------HSFB2a(1)        ------>ZmHOX2a(1)                                            <---  --------------------->WRI1        <---------------AGL15            --------->ATHB12            ---- -----ARR11(3)      ----------->RAV1(1)                        --------->YAB1                   <----   actctcttggaagcttctctcacaacagcaaatgcttcctacaatttgaaatttccacaattgaatcaaaaacattggtgtcaaaaccaaaaactgaagg  775700                                                           --------->ANAC46                                                           --------->ANAC58                                                           --------->ANAC58                        <-                                                      <----------DOF2                 --------->GLK1(2)                                                     <---------ANAC58      --------->ANAC46       ---                                      <----------DOF2<---------ANAC46      --------->ANAC58  --------                                  <-----------GT1    <---------ANAC58      --------->ANAC58---------- ----------->GT1               --------->ARR14(2)<-------MYC3         ------>ZmHOX2a(1)   --------->LBD16 ------ARR14(2)        <---------ARR14(2)        ------->MYC3       --------->ZAT14   <---------ARR14(2) ----->ARR14(2)  --------->DAG2<---------GLK1(2) ------->MYC2       <---------ZAT18   --------->ARR14(2) --ZmHOX2a(1)   ---------->DOF2<---------ARR14(2)<-------MYC2 <-----------HVH21      <---------GLK1(2)   atttggaaaattacaggtaaaagtgaatccatggattctcctttctgagcacgttgcttcaacgcatcagtcctctctcgcaactcagaatccgaaagag  775800                                           --------->ZAT18                                          <---------ANAC58                                          <---------ANAC55(2)                                          --------->ANAC55(2)                                          <---------ANAC58               --------->ANAC58           <---------ANAC46  <---------ARR11(3)          ----------->HVH21     <---------ANAC46 --------->GLK1(1)         <---------ARR14(2)  <-----------RAV1(1)      --------->YAB1 --------RAP2.6(3)         --------->ARR14(2)  <---------ZAT6          <---------YAB1      --------->At4g35610 ------>RAP2.6(2)     --------->MYB52(1) <-------TEIL               <---------MYB52(1)     --------->LBD16 -->DOF2       --------->ANAC46          <---------------AtSPL3    <-------GAMYB           <---------At4g35610 >DOF2         --------->ANAC58      <---------MYB46(3)   <---------ZAT18             --------->KAN4(2)   ccgaaatctcagtctccaagcgattaacggatgcgacgatggatgcgtactgttgcctagtcgactctccgttatcagaacccttgaaaattccgctaag  775900                                                                                             --------                                                                                          <------MYB46(1)                                                                                          <------MYB83                                                                                          <---------ANAC58                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)                                                                                    --------->LBD16                                                                                   <---------------AGL15                                                                                   --------------->AGL15                                                                                  ----------------->AGL1                                                                                  <-----------------AGL3                                                                                  ----------------->AG                                                           --------->ARR14(2)     <-----------------AGL1                                                           <---------GLK1(2)      <-----------------AGL2                                                           <---------ARR11(3)     ----------------->AGL3                                                    --------->REM1(1)     <---------DEAR3(1) <-------                                          <---------At4g35610           --------->MYB52(1)<---------ANAC58                            <---------ANAC58 <---------At4g35610       ----------->HVH21 <-----------RAV1(1)                            <---------ANAC58 --------->At4g35610--------->ANAC46<---------ARR14(2)                    --------->ZAT6    --------->LBD16      <---------ARR14(2)--------->ALFIN1------>NtERF2   aagaccacctagtgaagcattcacactcgtgcttctcttccgagagcagctactacatccagatactcccaacttgacggtgtttccgaatttggtgccc  776000                                                                                               ------                                                                                              -------                                                                                           <---------MYB46(3)                                                                                        <---------DEAR4(2)                                                                                       <---------DEAR3(1)                                                                        <------MYB83   --------->ALFIN1                                      --------->HSFB2a(1)               <------MYB46(1)<---------AtMYB61                                      <---------HSFB2a(1)              --------->MYB111(1) ----------                                      <---------HSFC1(2)               --------->MYB55(2) --------->ALFIN1                                      --------->HSFC1(2)               --------->MYB46(2)<-------GAMYB                                <------NtERF2          --------->ANAC58--------->MYB111(2)<---------AtMYB61                             <---------LBD16    --------->LBD16       <---------MYB55(1)<---------MYB46(3)                <---------At4g35610  <---------YAB1    --------->ANAC58<---------MYB46(3)<------NtERF2  <----------ID1--------->At4g35610<------ZmHOX2a(1)<------ZmHOX2a(2)<---------MYB52(1)<---------DREB2C(2) ->ZAT18      <-----------RAV1(2)  ========================HOX2a_HOX2a<--------P      <---------ABI4(1) --ZAT18   --------->At4g35610 --------->LBD16 --------->ANAC46---------->DOF2 <------ZmHOX2a(2)   --   caaaacgacgaagagctcagaagacgattttgccggaggatgattccatccgcgatcacgaactgagaagcggtaggtgagatcgaggggcggtggtaaa  776100                                               <------NtERF2      ----------->GT1                                              --------->LBD16    --------->At4g35610                                             <---------LBD16  --------->ATERF1(1)                                            <---------LBD16   <------NtERF2                                        <---------ANAC58     <---------MYB46(3)                                        <---------ANAC58     ------>NtERF2                                       <------NtERF2        <---------ANAC46                                      ------>NtERF2        <---------LBD16                                     <---------DEAR3(1)   ------>NtERF2                                    --------->ATERF1(1)   --------->LBD16                                   <---------ATERF1(1)   <---------RAP2.3(2)    --------->At4g35610                                  <---------DEAR3(1)    <---------LBD16         <---------At4g35610                                  --------->ETT(2)    <---------ARR14(2)       --------->LBD16 --->DAG2                         ----------->HVH21   --------->ARR14(2)      <---------RAP2.6(2) --->DOF2                   --------->YAB1 --------->ZAT2<---------RAP2.6(2) <---------LBD16  ------- ->GT1          --------->ALFIN1  --------->DEAR3(1) <---------GLK1(1)       --------->SPL7  -------- ------->MYB52(1)          <---------YAB1  <---------ZAT2<---------LBD16     --------->RAP2.6(3)    <   gtaactgagagtcgcagagtggagacaccatcatcgtcgacggcgagccgggagaatttccggcgggagcgaaaaacagtccggctgaagaaaacccgaa  776200                                                                                    --------->TOE2(3)                                                                                   <---------ANAC46                               --------->ZAT14                                     <---------ANAC55(1)                <---------ANAC58                                    --------->DAG2 <---------ANAC58                <---------ANAC58                              <---------ANAC46     <---------YAB1        <---------LBD16     <---------ANAC46               <---------MYB52(1)      <---------ANAC55(2)      <-----------GT1  <---------ANAC46--------->ANAC58    --------->ALFIN1        <---------ANAC58 -->LBD16  <---------MYB52(1)  <---------ZAT14    <------------CBF  <---------TOE2(3) ->ANAC46 --------->LBD16<------NtERF2 --------->ANAC58  <---------TGA1a         <-----------GT1   -- ----------DOF2 <---------ANAC46    --------->ZAT18      <---------O2     ----------->GT1<-----------GT1   aacttttatttccggttttcgtgtgtcgtcgagtgaagagcacgagagagagaattgagacgttggggataaggtgatgttaattacgtttataccccta  776300                                     <------------CBF                                    --------->ATHB12                                  <-----------TGA1                                  <-----------HVH21                                 --------->ANAC58                                 <---------ANAC55(2)                                 --------->ANAC58                                 <---------O2                                 --------->TGA1a                                 --------->O2                                 --------->ANAC55(2)                                 --------->ANAC46                                 --------->bZIP60(1)                                      <---------AHL20(1)                                 <---------bZIP60(1)                                  <---------AHL20(2)                       ====================bZIP_DOF                                --------->AHL20(1)                       <----------DOF2        <---------ANAC58                    --------->AHL20(2)              <---------ARR14(2) =========================================bZIP_DOF<---------AHL20(2)              --------->ARR14(2) --------->bZIP60(2)                         --------->ANAC46            <---------MYB46(3)   <---------TGA1a                             --------->ANAC58           <---------ANAC46     <-----------STF1  --------->ANAC55(2)        --------->ANAC58        <-----------RAV1(1) <-----------GT1   <---------ANAC58 <----------DOF2    --------->ATHB51 ------->ANAC46     ----------------------->TaNAC69(2)  <-----------GT1    <-----------GT1--------->ARR11(3)   gactcaacttctggtggatactcttcttttttgccacgtcattgagtttcttacatattttctagctttaacttatttcacgaattattttatatattcg  776400                                       ----------->HVH21                                     <---------At4g35610                       <---------ARR14(2)                       <---------GLK1(2)                       <---------ARR11(3)          --------------->AtSPL8             --------->YAB1          --------->ANAC55(2)                                            <            <---------YAB1          <---------TOE2(3)                                --------->DAG2 <       ------->TEIL    --------->ARR14(2)       --------->ATHB12              >>>>>>>>>>MYB80<-------   ------->TEIL        --------->ARR11(3)     <---------WOX13(1) --------->ARR11(3)---------->DOF2  -   gcatgtatgtgcctatgataatgcagattttaaaaatttaggtgaccgattgatttgtaccatcaaataacttggattcaaaccaaaaaggctaagcatg  776500              --------->ANAC58              --------->ANAC58                                                           ----------->HVH21              --------->ANAC55(1)                                                <---------ANAC46 ----------------------->TaNAC69(2)                                              <---------ANAC58 --------->At5g28300                        ----------->GT1          <---------ALFIN1    ------->GAMYB ------MYB83  --------->bZIP60(2)         ---------->DOF2           <---------REM1(2) --------->MYB52(1) ------MYB46(1)                      ----------->GT1 <---------At5g28300         <---------ANAC58 --AtLEC2     --------->ANAC46--------->At5g28300   --------->MYB52(1)           <---------AtLEC2 ---------->GT1              ----------->GT1<----------ID1   <---------ICU4    <---------YAB1  ------   gatggtaaaaatagacacggcattacatcgactgtaaaatggtaaaaagaaaaatcacggtcatcatctctacacattattttgcttgtaacggacagag  776600  Previous    Next  AGI:  At4g01800.1    Description:  preprotein translocase secA subunit, putative. Identical to Protein translocase subunit secA, chloroplast precursor (secA) [Arabidopsis Thaliana] (GB:Q9SYI0); similar to ATP binding [Arabidopsis thaliana] (TAIR:AT1G21650.1); similar to Preprotein translocase subunit secA, chloroplast precursor (GB:Q41062); similar to Preprotein translocase subunit secA, chloroplast precursor (GB:Q36795); similar to putative SecA [Oryza sativa (japonica cultivar-group)] (GB:BAD44978.1); contains InterPro domain SecA motor DEAD (InterPro:IPR014018); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domai Range:  from: 770722    to: 776131    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01810.1    Description:  protein transport protein-related. similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to hypothetical protein OsI_001607 [Oryza sativa (indica cultivar-group)] (GB:EAY73760.1); similar to hypothetical protein OsJ_001490 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11665.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40230.1); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain 4Fe-4S ferredoxin, iron-sulphur binding; (InterPro:IPR001450); contains InterPro domain Range:  from: 776488    to: 780355    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version