Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------YAB1                                                      --------->AHL20(2)                                                      <---------AHL20(2)                                                      --------->AHL20(1)                                                      <---------AHL20(1)                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                     --------->YAB1          --------->AtLEC2                       <---------AHL20(1)    <---------ICU4                               --------->AHL20(2)    -------->HAHB4                               <---------AHL20(2)    <--------ATHB1                               --------->AHL20(1)   <---------ATHB51  <---------TOE2(3)          --------->AHL20(2)                   <---------AHL20(2)   <---------YAB1  <---------AHL20(2)           <---------AHL20(2)                   --------->AHL20(2)   --------->ICU4 <---------AHL20(1)      --------->TOE2(3)   <---------AHL20(2) <---------DAG2 --------->YAB1   <---------AHL20(2)     ----------->GT1    <---------YAB1       <----------DOF2 ------->AHL20(2) --------->AHL20(1)    <---------TOE2(3)<---------AHL20(2)   <-----------GT1   <---- ------->AHL20(1) --------->AHL20(2)  <---------AHL20(2) --------->AHL20(2)  --------->AHL20(2)<----- ------>YAB1     --------->YAB1      --------->AHL20(2)  <---------YAB1   --------->WOX13(1) <-------   aaataataattcatgctaaatataatgttatcccatcaaattaatgttaaataaattatattattattttaaacttcaattaactttttaatttagtatt  764100                                                           ----------->RAV1(1)                                                          --------->MYB46(3)                                                         ------>MYB46(1)                                                         ------>MYB83                                                        ----------->RAV1(1)            <---------AHL20(2)                                                    >>>>>>>>>>WRKY38      <---------AHL20(2)                                                    >>>>>>>>>>WRKY26      --------->AHL20(2)                                                    >>>>>>>>>>WRKY43      <---------AHL20(1)                                                  <---------WOX13(1)      --------->AHL20(1)        <                                               --------->AHL20(2)        <---------AHL20(2)        --      --------->YAB1                           <---------AHL20(2)        --------->AHL20(2)   -------     --------->ICU4                           <---------AHL20(2)       --------->YAB1 <---------AHL20(2) ----HAHB4         --------->TOE2(3)          <---------AHL20(1) ----------->GT1      --------->AHL20(2) ----YAB1<---------AHL20(2)                   --------->AHL20(2)<-------MYC3          <---------AHL20(1) --ZAT6 <---------YAB1       --------->TOE2(3)--------->AHL20(1)------->MYC3   ----------->GT1<------   attagccataataaatgtttttcttaaaaaacattaatgcatacaaaatttaattgaccaacaacacatgtaaaaataaatttgttaattttttttttaa  764200                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              ------>NtERF2                                                                             --------->RAP2.3(2)                                                                             --------->DEAR3(1)                                                                             --------->RAP2.3(3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            --------->RAP2.3(1)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            --------->ERF1                                                                           <---------ATERF1(1)                                                                          --------->ANAC58                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          --------->ANAC58                                                                          <------NtERF2                                                                         --------->ZAT18                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         ------>NtERF2                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                     --------->DAG2                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     xxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------->GT1                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                     <---------RVE1(1)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                    <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <----------ID1                   <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ---------TOE2(3)           <---------ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------->MYB52(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxxxx -->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--------->HSFB2a(2) ---------->DOF2   xxxxxxxxxxxxxxx ---AHL20(2)----------->GT1 --------->ARR14(2)  <---------HSFB2a(2)---------->DOF2 xxxxxxxxxxxxxxxxxx   ttaagggaacaaaatggatatataacttagtatatgcagattttttttttttagaaaatgacagccatcaaaaggcgcgcagccaaaatggatatataac  764300                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <x                                                                                                   --                                                                                                 <xxx                                                                                                <xxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx             <---------AHL20(2)                                                           ------>ZmHOX2a(2)            xxxxxxxxxxxxxxxx>smallRNA(i)                                                  <xxxxxxxxxx           <---------RVE1(1)                                                              --------->ETT(2)          <---------GLK1(2)                                                              <---------WOX13(1)          --------->ARR14(2)                                                           xxxxxxxxxxxxxx          --------->ARR11(3)                                                          xxxxxxxxxxxxxxx          <---------ARR14(2)           --------------->AGL15                          <xxxxxxxxxxxxxx          <---------ARR11(3)           <----------DOF2                             xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ARR14(2)                   <---------------AGL15                     <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ARR14(2)              <-----------GT1                                xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(se3)          <---------DAG2                                     xxxxxxxxxxxxxxxxxxxxxx xxx>smallRNA(le3)          <----------DOF2                                    xxxxxxxxxxxxxxxx>smallRNA(i) xx>smallRNA(si3)          <---------ANAC58                                    <xxxxxxxxxxxxxxxxsmallRNA(i) xxsmallRNA(le3)           <---------ANAC58             ----------->GT1       xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(si3)   <-----------GT1       --------->DAG2        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxx>smallRNA(s2)   <-----------GT1      ----------->GT1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxx>smallRNA(fl3) <------------------------ANAC81  ---------->DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ttagtatatgcagatttttttttttttttgcttttttatctctttaagaagaaaaaaaaagttaaacattttctcaacatgtaaacatctgatcgacaga  764400              <<<<<<<<<ARR1      ----------->HVH21   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->HVH21 xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                 <--- xxxxxxxxxxxxsmallRNA(i)                   --------->AHL20(1)                                 ------>NtERF2 xxxxxxxxxxxxxxx>smallRNA(se3)             --------->AHL20(2)                                <------- xxxxxxxxxxxxxxxsmallRNA(si3)              <---------AHL20(2)                            <-----------GT1 xxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------AHL20(2)                            <---------AHL20(2) xxxxxxsmallRNA(i)                    --------->AHL20(2)                            --------->AHL20(1) xx>smallRNA(i)             --------->YAB1 <---------AHL20(1)            <----------DOF2<-----------GT1 x>smallRNA(i)<<<<<<<<<ARR2 --------->TOE2(3)                     <-----------GT1   <---------AHL20(1) xxxxxxxxsmallRNA(si3)   <-----------GT1--------->YAB1       <----------DOF2     <---------AHL20(2) x>smallRNA(i2)    <---------YAB1 <---------AHL20(2)      <---------AHL20(2)     --------->AHL20(2)   cttgacatatgacacaatcttatgaattaaccatattttatataataaaatagaaactattttctttgttacaaacttttcatttatatatttccccacc  764500                                                                                 --------->TOE2(3)                                             <----------DOF2                  <---------GLK1(2)         =============================HOX2a_HOX2a                           <---------ARR11(3) ------  ------->TEIL  ----------->GT1        <-----------RAV1(1)       <---------At4g35610     ------------ -------DOF2  *TSS       <-----------GT1 ---------->ID1          --------->At4g35610    ---------->DOF2 --ALFIN1------>ZmHOX2a(2)     ------>ZmHOX2a(1)       --------->REM1(1) ----------->RAV1(1) <-------TEIL   tttgaatctgatccaaacttgtaaaattttctcctcaaattttgttgctctactgctacaacaatggagcagaaacaacatattcttaaacaaagtacat  764600                                                              ------->GAMYB                                                         --------->LBD16                                                        --------->ANAC46                                                        --------->ANAC58                                                        --------->ANAC58                            <                   <---------YAB1                  ------>ZmHOX2a(1)    ------>ZmHOX2a(1)          --          ------>ZmHOX2a(1)               <---------CCA1(2)--------->MYB52(1)                 <------     ------>ZmHOX2a(1)                --------->SPL7    --------->RAP2.6(2)   ------>ZmHOX2a(1)    == --->KAN4(2)    <---------YAB1      <---------SPL7--------->TOE2(3)  ------>ZmHOX2a(1)       ------>ZmHOX2a(1) --->AtSPL8  <---------ARR11(3)     <-----------HVH21  <---------LBD16 --------------------->WRI1  ==   tctcttcctctcctagttcttattcttcaatctcagaccgtcccatctctctccttagccgcaacggtctcctccttctccttctcgctctcgtcctgct  764700                                      ------>ZmHOX2a(1)                               <---------MYB52(1)                          ===================HOX2a_HOX2a                          ------>ZmHOX2a(2)                         ====================HOX2a_HOX2a                         --------->GLK1(1)                                      --------->DEAR3(1)                         <---------GLK1(1)                                    <---------At4g35610                         <------ZmHOX2a(2)                                    --------->At4g35610                        --------->ARR11(3)                                    --------->LBD16                        <---------ARR14(2)                                   --------->ANAC46                        <---------ARR14(3)                                  <---------LBD16                        <-----------ARR10                                 <---------ARR14(2)    <---------ZAT14     --------->ARR14(2)                                --------->ARR14(2)    <---------ZAT18     --------->ARR14(3)                              <-----------HVH21    --------->ZAT14     <---------ARR11(3)                           <---------At5g28300 ---------DEAR3(1)     <------ZmHOX2a(1)                            <-----------GT1         ------>NtERF2 ---->ZmHOX2a(1)       <---------GLK1(2)                          <-----------HVH21        <---------ANAC58 ---At4g35610       <-----------RAV1(2)                        <----------DOF2--------->ZAT14<------NtERF2 ===============================HOX2a_HOX2a               <<<<<<<<<TBF1--------->DEAR3(1)  <---------ANAC58 ================================HOX2a_HOX2a            <------------------------ANAC81    <---------ANAC46   cctcggtgtactcttgccctggccaggatctcccttattcctgtttccaaatagactttcttcttctttgtcaccgtctccgcagtccaaatggcgcgac  764800                                                               --------->ZAT18                                                             --------->ZAT2                                                             --------->At4g35610                                                             <---------At4g35610                                                             <---------ZAT2                                                          <---------MYB52(1)                                                        <---------TGA1a                                                        ================================bZIP_DOF                       --------->MYB52(2)               --------->TGA1a                       <---------ANAC58                 <---------ANAC46                       <---------ANAC46                 =============================================                       <---------ANAC58                 <---------O2                      <-------TEIL                      --------->O2                   <------MYB46(1)                     <------NtERF2                   <------MYB83                       ------>NtERF2               <------NtERF2                         --------->ANAC46               --------->ATERF1(1)                  <---------At4g35610               --------->MYB46(3)              ------>NtERF2                         --------->ATERF1(1)      <----------DOF2              <---------RAP2.3(1)                  <---------ATERF1(1) <---------ANAC58        ------             <---------DEAR3(1)            <---------YAB1<-----------HVH21  <---------DAG2   <-------         <-----------RAV1(2)<-----------------AGL1<---------DEAR3(1)   <---------ANAC58      <-------   tatacccttgctcaggcggctaggttcgtggccaagaatggcactgtgatagtctgcgccgtgagctcaccattcttgccttttctcaacaactggttga  764900                                                                                            ------>NtERF2                                                                                           --------->ANAC46                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                           <---------ALFIN1                                                                                           --------->O2                                                                                   <---------ANAC58       <---------HSFC1(1)                      <------ZmHOX2a(1)                   <---------ANAC58       --------->HSFB2a(2)                   <---------TOE2(3)                     <---------ANAC46<-       <---------HSFB2a(2)               --------->At4g35610                       <---------bZIP60(2) <---------ZAT6                         ==============HOX2a_HOX2a             <---------O2 --------->bZIP60(2) =MYC_MYB      --------->ANAC58         ------>ZmHOX2a(2)             <---------WRKY38(1) --------->ATERF1(1) --->ATHB12    --------->ANAC58  ------>ZmHOX2a(1)                    <---------WRKY45   <---------ALFIN1 -P    --------->HSFC1(1) ---------->DOF2<---------At4g35610          <---------WRKY12   <---------ATERF1(1) --WOX13(1)  ---------->DOF2     ==============HOX2a_HOX2a       ---------->DOF2 --------->ZAT18<----   ttagtgtttctagacaaaagcatcaagacaaagtcctcgtgatcgctgaggattacattactctgtataaagtcaacgagaagtggcctggccacgccgt  765000  Previous    Next  AGI:  At4g01770.1    Description:  RGXT1 (RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 1); UDP-xylosyltransferase. similar to RGXT2 (RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 2), UDP-xylosyltransferase [Arabidopsis thaliana] (TAIR:AT4G01750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39698.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69309.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 764514    to: 766865    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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