Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <-------GAMYB                                              <---------ANAC58                                              --------------->AGL15                                              <---------------AGL15                                              <---------ANAC58                                             <-----------------AGL2                                             <-----------------AG                                             <-----------------AGL3                                    ------->MYC3         <------MYB46(1)                                    ------->MYC2         ----------->GT1                                    <-------MYC3         <---------MYB46(3)     --------->ZAT6                 <-------MYC2         <------MYB83       <-----------GT1    <---------YAB1               --------->YAB1        <--------P <---------YAB1  --------->YAB1               --------->ANAC58       <-------GAMYB  --------->CCA1(2) <------MYB83  <---------ICU4               --------->ANAC58      <---------MYB46(3)   <---------WOX13(1) -HVH21                     --------->WRKY18(1) <---------MYB52(1)<---------TOE2(3)    <------MYB46(1)   accatcatcactaaacgtctatatcaactagtcaagcatatgctacttccgtttttggttggttaattaagatttgatttactcttgtttggtttccatt  642300                                                              <---------AHL20(2)                                                              <---------YAB1                                                             <---------AHL20(2)                                                           <---------AHL20(2)                                                         <---------AHL20(2)                                                        --------->AHL20(2)                                                        <---------AHL20(2)                                                        --------->AHL20(1)                                                        <---------AHL20(1)                                                        <---------ARR11(3)                                                   <---------AHL20(2)                 --------->GLK1(2)                                                   --------->AHL20(2)          <------MYB83                       ------->GAMYB            <---------AHL20(2)             <------MYB46(1)                      --------->MYB46(3)       --------->AHL20(2)          --------->ATHB12                 <---------REM1(1)             <---------AHL20(2)       ---------->DOF2         <-----------GT1                 <---------ZAT6 --------->ARR11(3)--------->ICU4            <    <----------DOF2   --------->ZAT6  ------>ZmHOX2a(1)--------->AHL20(2) <---------YAB1   <---------AHL20(2)   gttcttctttttcaccttgatgtaacagtcgagtttcttcctagtgttattaaataaatatatttttattgaagtaaagattggtgagaatatttattca  642400                                                     <----------DOF2                                                   <---------YAB1                                                  --------->ARR11(3)      --------->ANAC58      -----          ----------->GT1                         <---------ARR11(3)      --------->ANAC58      <----       --------->DAG2                     --------->At4g35610             <----------ID1     -------- ----------->RAV1(1)           <---------YAB1  <----------DOF2      <---------YAB1  ----------->RAV1(1) ----------ID1        --------->ZAT6     <---------ARR11(3)    ----------->GT1     <----------ID1   atacaacaaaaattgaaaatttgaactctagttttgatttcattatctgcattatctttgagttttagttaaaattaagccaaaaacaacaaaaacaaag  642500                                                                                                   --                                                                                                   <-                                                                                                  ---                                                 <---------ICU4                    <---------TOE2(3)<      ------>MYB83                              ------>ZmHOX2a(1)         <---------ANAC58      -----      ------>MYB46(1)                          <---------MYB59            <---------bZIP60(2)   -----    --------->TOE2(3)                      <---------GLK1(1)              <---------ANAC58    <------    <---------MYB59                        --------->GLK1(1)              <---------ANAC46    ------- ---->At4g35610                       --------->MYB52(1)              --------->At5g28300     <------ -----At4g35610     <---------TOE2(3)--------->TOE1(2)             <---------At5g28300        ------- -->DOF2      <---------ZAT14        --------->TOE2(2)       ---------->DOF2      ---------->DOF2<---   ctgaaacctaatagactaaactaatgtaataccatcaaacttacgaattcctaatttcatttttaaagtcacagtgacttggattaaagttcccaaaata  642600  --------->GLK1(2) ------->AHL20(2)                                                   --------->MYB52(1) --------AHL20(2)                                                   ---------->DOF2 ------>YAB1                                                  <-------TEIL ---------YAB1              --------->YAB1                 --------->HSFC1(2) ---->AHL20(1)           <---------ICU4                    <---------HSFB2a(1) ---->AHL20(2)          --------->AHL20(2)                 ----------->GT1 ---AHL20(1)            <---------AHL20(2)                 <---------HSFC1(2) --------->ATHB51 -->AHL20(2)            --------->ICU4             <---------HSFB2a(2)        <---------ICU4 ---ARR11(3)     <---------ANAC58                  --------->HSFB2a(2)       --------->ICU4 -->AHL20(1)     <---------ANAC58      ------------>CBF   <---------------AtSPL8             <------- ------YAB1      <---------ANAC46 --------->YAB1   <-----------RAV1(2)   <-----------------AGL1   ---   ttataatctgaatgcaatttcttgtattaattacaacgatagtcaatagaggcccagaagaaggttcaaataaaggcccattatggcccaagttataacc  642700                                                                                 --------->ALFIN1                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                           --------->REM1(2)               <---------HSFB2a(2)                                         --------->ZAT14               --------->HSFB2a(2)                                    <---------ANAC55(1)             ===============HOX2a_HOX2a                               <---------O2         ===================HOX2a_HOX2a                               --------->O2 --------->ALFIN1         ------>ZmHOX2a(2)                                            <---------ANAC55(2)        ====================HOX2a_HOX2a                               <---------TGA1a       --------->ARR14(2)                                             <---------ANAC46       <---------ARR14(2)                                             <---------ANAC58<---------PCF2      <------ZmHOX2a(1)           <-----------HVH21                   --------->TGA1a --------->ZAT18      ==============HOX2a_HOX2a  *TSS                  <---------ANAC46    <---------ZAT14    <---------TOE2(3)            ===============================================MYC_MYB           <--  ---------->DOF2    <------ZmHOX2a(1)                 <---------ANAC58   --------->ALFIN1        --- ----GT1<------ZmHOX2a(2)        ------->GAMYB         <---------ANAC58 --------->ALFIN1    --------- ------>LBD16<------ZmHOX2a(2)----------->RAV1(1) --------->CCA1(2)   <---------ANAC58<---------ZAT18   cgaataaaggatccgatcgagaaggagagagacaacagtcacagacacagagagatggcgagagagaagaagacgtgtgtagagtgtgggcacaaggtta  642800                                <---------ANAC58                                <---------ANAC58                              <-----------GT1                      <---------HSFB2a(2)                      ------>ZmHOX2a(1)              <----------DOF2                      --------->LBD16         <---------ANAC55(2) -------ARR11(3)      --------->HSFB2a(2)     <---------ANAC58 ------>ARR11(3)     <---------LBD16          --------->ANAC55(2) -->GT1             ----------->RAV1(2)       <---------ANAC58         <---------TOE2(3)           --   aatctttgttcatacaatactctcctggaaattttcgtctcatgaaatgcgtaagcttttaccaaaactaattagggttcttaatctctacttgtaatct  642900                                       <------ZmHOX2a(1)                   --------->ALFIN1                                      <------MYB83                         <---------ZAT6                                      <------MYB46(1)                    <---------ANAC46                                    <--------P                         <---------ANAC46             <----------DOF2 <---------DAG2    <---------ANAC46  --------->ARR14(2)        ---------->DOF2    <---------------AGL15                 <---------ARR14(2)         <-------- ---------->DOF2           --------------->AGL15         <---------At4g35610    <---------At4g35610 ------->LBD16            <-----------------AGL3         --------->At4g35610  --------->ZAT18<-------   ccccaaagtttaaagctttttttgatgttcaatttttggtaggagaattgcgaagaagtagcagacgaatatgtcgagtgtgagctattggtctatatct  643000                                                                             --------->YAB1                                                                             <---------ICU4                                                                          --------->YAB1                                                                       --------->YAB1                                                               <---------ANAC46                                                               <---------ANAC58                                 <----------DOF2               <---------ANAC58    <---------GLK1(2) -CCA1(2)                 <---------AHL20(2)             <---------AHL20(2) --------->ICU4 --ARR11(3) <-----------GT1   <---------YAB1        <---------YAB1    <---------YAB1      <---------YAB1   atatgtctctctattttcaagtttcaatttttatgcttttgtgttcatcaagttttgatttttttgtgtgttttgataatcatcagattattttcatcga  643100                                                                                        ------->TEIL                                                                                        --------->GLK1(2)                                                         <---------ARR14(2)            <---------CCA1(2)                                                         --------->GLK1(2)         ----------->GT1                                                         --------->ARR14(2)    --------->ARR11(3)                                                        <---------GLK1(2)     --------->YAB1               ---------->DOF2                     <---------ATHB12    <---------TOE2(3)--------->ARR14(2)         --------->ANAC46                    ----------->GT1           <---------TOE1(3)<---------ARR14(2) <---------GLK1(2)                --------->ZAT6 --------->WOX13(1)   <-----------RAV1(2)   cttgattcttcacaaaacaaaggcttatagacacttactctacaatgttgttaatcaagaatctgcaaatgttcaggtaaacatattgtgaatcttggtt  643200  Previous    Next  AGI:  At4g01505.1    Description:  Encodes a Plantacyanin/Basic blue family protein [pseudogene] Range:  from: 641462    to: 642214    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g01510.1    Description:  ARV2. similar to ARV1 [Arabidopsis thaliana] (TAIR:AT1G01020.1); similar to hypothetical protein OsI_013313 [Oryza sativa (indica cultivar-group)] (GB:EAY92080.1); contains InterPro domain Arv1-like protein (InterPro:IPR007290) Range:  from: 642733    to: 644336    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version