Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ------>NtERF2                        <---------RAP2.3(3)                        <---------RAP2.6(2)                     --------->WRKY12                     ----------->HVH21            --------->AtMYB61            --------->O2           --------->MYB46(3)<------NtERF2 ----------->HVH21          ------>MYB46(1)<---------ATERF1(1)         --------->ORA47(1) ------>NtERF2--------->bZIP60(2)      <------ZmHOX2a(1)        --------->MYB46(3)--------->ATERF1(1)           <---------PCF2       --------->DEAR3(2)<---------RAP2.3(1)         --------->ALFIN1 -------->ZAT18   <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->ALFIN1 ---------ZAT18   <---------ANAC46       <---------bZIP60(1)     <---------ZAT18    ------>MYB46(1) --->WRKY38(1) <---------ATHB12          --------->bZIP60(1)  ------->GAMYB <----------DOF2 ------>ZmHOX2a(1) -DEAR3(1)------>MYB83 --------->RAP2.6(3)<-----------HVH21----------->RAV1(1)      ------>MYB83   actgcccttaccgaccaatggtgttgacggccccttagaagtcatgtcacaaggtgtgggacaacagaggacttcgagctttcaccaacttctcctccaa  630700                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                                                <---------ARR14(2)                                                <---------ARR11(3)                                                --------->ARR14(2)                                           -------->P     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          ------->GAMYB  <---------WOX13(1)                                         <---------MYB111(1)                                         <---------MYB111(2)                                         <---------MYB55(2)              --------->DAG2                                         <---------MYB52(2)         <-------TEIL                                         --------->MYB46(3)     <---------TOE2(3)                                   --------->At4g35610 --------->ATHB12 ---------->DOF2    <----------DOF2         <----------DOF2--------->MYB52(1)   <---------------AtSPL8   accctcctttctccccttggcttcatagtgctttaagagctcaactaccagatcccttgattgtttgaggtacaaaaagtcttgagcatttactcttgca  630800                                                                                             --------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                          --------->YAB1                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        -------->P                                                                                      --------->MYB46(3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <x                                                       xxxxxxxxxxxxxxxx>smallRNA(i)   <---------MYB55(2)                               <----------DOF2       <---------DAG2                   <---------MYB111(2)              <---------MYB46(3)                   ------->TEIL               <---------GLK1(2)<-----          xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------ARR14(2)   --------->AtLEC2------->GAMYB   tttatgtctaaccttgtggttctatctcttgaactttctcactatatgtgaagaaccttttcaaacttatgtcatgctcagtttctcaacaaccatgatg  630900                                                                                                    <                                                                                                   xx                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                           <-----------GT1      =====                                                                         <---------KAN4(2)      ----- ->YAB1                  <---------DAG2                                 --------->YAB1  <---------ANAC58 --ICU4                ------->TEIL                                 <---------MYB52(1)  <---------ANAC55(1) -YAB1                <---------ARR14(2)                    --------->ANAC46            --------->ANAC55(2) >ICU4         <---------ZAT6                               --------->ANAC58  --------->ATHB12<------ xxxxxxxxxxxxsmallRNA(si3)                          ------>NtERF2  --------->TOE2(3)    <---------ANAC55(2) xxxxxxxxxxxxsmallRNA(le3)                   --------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ANAC58------>NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----YAB1      <---------ANAC46         <---------ETT(2)    --------->ANAC58 <---------YAB1   -------   acaaactctctcacctagtgtgaagaaccttttcaaattgtatcgacaagactctgccctagacgccttcgttagaataaccattggattacgtgtgatc  631000          <---------TOE1(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->LBD16         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------LBD16         <---------HSFB2a(2)         --------->HSFB2a(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->GLK1(1)    <---------GLK1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <-----------ARR10 xxxxxxxxxxxxxxxxsmallRNA(i)                                                 --------->GLK1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             ---------->DOF2<---------At4g35610             xxxxxx ==================HOX2a_HOX2a        <---------MYB52(1)       --------->At4g35610             xxxxxx ->ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i) ---ARR11(3)   <---------MYB59   --------->GLK1(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------ICU4 -->ARR11(3)<------ZmHOX2a(1)   <---------GLK1(2)  <----------ID1--------->ZAT18         <---------ATHB51   ttgctgagttcccaggacctaagtatagaccaaagaatcccttactctgcaaaaggaaaagacatagctcacagtcaaaaatcttactcaaattatgcca  631100                        ---------->DOF2                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                  <---------LBD16            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       --------->HSFB2a(1)         <xxxxxxxxxxxxxxxxsmallRNA(i)                  <------ZmHOX2a(1)           --------->ANAC46        --------->WRKY18(1)                       --------->ATHB12   <---------HSFC1(2)      --------->At4g35610                         --------->YAB1     --------->HSFC1(2)  <---------ARR14(2)--------->LBD16              <---------YAB1      <---------HSFB2a(1)  --------->ARR14(2)<---------LBD16         --------->YAB1     ---------->DOF2   <---------ALFIN1 xxxxxxxxxxxxxxxxx>smallRNA(se3)    *TSS   <---------YAB1 <-----------HVH21   --------->AtMYB61 xxxxxxxxxxxxxxxxx>smallRNA(le3)  <-----------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   gtcaaaaccgctcaagggactctggggaaagagctatgtcagtttatgaaaatgataggaggtcagaaagaagcttctcacctccacctaagaagcgaat  631200        --------->ANAC58        --------->ANAC58       ------>MYB83       ------>MYB46(1)                                    --------->ARR14(2)      <---------ALFIN1                                    <---------ARR14(2)     <---------MYB111(2)                        --------------->AGL15                         xxxxxxx     --------->DEAR3(1)                         <---------------AGL15                      --------->TCP16(1)     --------->MYB46(3)                        <-----------------AGL1                      --------->PCF2     <---------MYB111(1)                       <-----------------AGL2                      --------->PCF5     <---------MYB55(2)                        ----------------->AG                   --------->MYB52(2)    --------->ANAC58          ------>ZmHOX2a(2)----------------->AGL1                <xxxxxxxxxxxxxxx    --------->ANAC58    <---------ZAT2         <-----------------AG         --------->At4g35610   --------->PCF2       <---------At4g35610   <-----------------AG --------->GLK1(1)<xxxxxxxxxxxxxxxx --------->ZAT18        --------->ZAT2        <-----------------AGL1      ---------->CDC5  <---------PCF2 <---------ZAT18        --------->At4g35610   -------->P  <---------KAN4(2) <---------At4g35610   <--   aagagcacccaccctagacaactcggagctgatccaagagaactcgcttacccttatgggaatactcacaaatccctcagcccagcgtttgtggtccctc  631300                                               ----------->HVH21                                              ------>ZmHOX2a(2)                                             <---------At4g35610                                             --------->At4g35610                                            <---------AGP1 <---------AtMYB61                                            <-----------ARR10       ------>ZmHOX2a(1)                    <---------ARR14(2)  <----------DOF2                           --------->ARR14(2) <---------DAG2                             <---------ARR11(3)<--------P                            - xxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxx>smallRNA(s) <-----------GT1            <------ZmHOX2a(1) xxxxxsmallRNA(se3)              ---------->DOF2       <xxxxxxxxxxxxxxxxsmallRNA(i)       xxxxxxxxxxx xxxsmallRNA(fl3)       --------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->ARR14(2)    <- -------CCA1(2)      <---------GLK1(2) --------->MYB52(1) <------NtERF2      <---------ARR14(2)    --   atacctttcctatcaaacagatggaatcttaagggcaaagctactggatctgacctaggcagaggttgtttccagttcagatttgaatatgaagaggacc  631400                                                                                ------>MYB46(1)                                                                                ------>MYB83                                                                        <---------bZIP60(1)                                                                        --------->bZIP60(1)             <---------YAB1                           --------->LBD16   --------->At4g35610           --------->YAB1                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ------>ZmHOX2a(1)       <-----------HVH21   <---------HSFB2a(2)<---------At4g35610         <  ---------->DOF2            <----------DOF2   --------->KAN4(2)       --------->ARR11(3)           < -------->LBD16           <---------ALFIN1 <------MYB83                <---------ARR11(3)        <--- xxxxx>smallRNA(i)      ------>MYB83       <------MYB46(1)            --------->ZAT14            <--- --------HSFB2a(2)      ------>MYB46(1)<---------MYB46(3)  --------->ALFIN1<-----------GT1    <------ ------->HSFB2a(2)      -------->P   <---------At4g35610<---------AtMYB61------>ZmHOX2a(2)    -------   tccagaaagtccttgataatagaccctaccactttggtcagtggatggtcattctccagaggtggaaaccagtgatctcaccttccttcccctcagaaat  631500                                                                                   --------->ALFIN1                                                                                 <------MYB83                                                                                 <------MYB46(1)                                                                            <---------LBD16                                                                           --------->ALFIN1                                                                         <---------At4g35610       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                <---------ZAT2 ----------DOF2                            ---------->DOF2               --------->At4g35610 ---------DAG2                <---------ZAT14                            --------->ZAT2 --------------AGL2           --------->ZAT18                   --------->ANAC58<---------AtMYB61 --------------AG    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ANAC58--------->MYB111(1) ---GLK1(1)    --------->ZAT14<---------ZAT18        <---------DAG2 --------->ANAC58   --------->ZAT18 -->GLK1(1)    <---------ZAT14--------->ZAT14        <----------DOF2--------->ANAC58   <---------ZAT18   ccctttttggattgaactgcagggccttccaatgcactactggataaaagaaatgctttatgccataggcaaggaagctggggaggtagtggaccatgaa  631600  Previous    Next  AGI:  At4g01490.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.4e-44 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 631136    to: 636899    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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