Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->DAG2            ---------->DOF2          >>>>>>>>>GATA-1    <---------YAB1   <---------AHL20(2)                                                                     ---------->DOF2   --------->AHL20(2)                                                                 <-----------GT1 <---------YAB1                                                                ------>ZmHOX2a(1) --------AHL20(2)                                             ---------->DOF2 --------->TOE2(3) ------->AHL20(2)               <---------AtMYB61         --------->REM1(1)   <---------ANAC46      < ------->ATHB51     <---------AHL20(2)             <---------GLK1(1)      <---------GLK1(1) ---------   attatttttatagataaagtattttatatgttttttggtcgagccaaatatcgaattccttcatcaaagtctatcgaattccttatatttaccaaagtaa  620400                                                                                                    -                                                                                                    -                                                                                                <----                                            --------->AHL20(1)                        <---------HSFB2a(2)                                            <---------AHL20(2)                       ================                                           <---------AHL20(2)                        ------>ZmHOX2a(2)                                           --------->AHL20(2)                        =============HOX2a_HOX2a                                          <---------AHL20(2)         <---------ARR11(3)        ------                                  ---------->DOF2              <------ZmHOX2a(1)   --------->ARR11(3)                                --------->LBD16                =============================HOX2a_HOX2a   <---------MYB52(1)          --------->HSFB2a(2)            <----------ID1       <---------AGP1<--- -------TEIL                   <---------HSFB2a(2)       ---------->DOF2 --------->ICU4    <------ZmHOX2a(1) -->GT1           ---------->DOF2--------->LBD16      ----------------->AGL1 <---------AHL20(2)------   aattcgttaagaacaaaaatcaaagagtattgtcccgaaagaaaattattttgaaggcccaaagaggacaaggtcataaatatttgatctggaggacagg  620500          <---------AHL20(2)                                              --------->AHL20(2)       ------->TEIL                                                    <---------AHL20(2)    --------->ANAC58                                                   --------->AHL20(2)    --------->ANAC58                                                <---------AHL20(2)  <---------ALFIN1                                            --------->ANAC55(2) --------->DEAR3(1)                                           --------->ANAC46     -------->HAHB4 -------->ANAC58                                              --------->ANAC58  --------->YAB1 -------->ANAC58                                              --------->ANAC58 --------->AHL20(2) --ZmHOX2a(1)                      ---------->DOF2           <---------LBD16   <---------AHL20(2) ==HOX2a_HOX2a             ----------->GT1                  <-----------GT1<---------AHL20(2) --->ANAC58               <---------TOE1(3)      ----------------------->TaNAC69(2)--------->YAB1 <-- ------ZAT18              <---------TOE2(3)     ----------->GT1    --------->AHL20(2)     <-------TEIL --->ANAC58               --------->MYB59 >>>>>>>>>TBF1   <-----------HVH21--------->AHL20(2) -------   acacccacgtatatttttgtccaaaatttaggttaaaaaaagaagaagaaaggttatctgtttcacggattaaatatttaattaataatacatacatata  620600           <---------ANAC58                                                   <---------AHL20(2)           <---------ANAC58                                                  <---------YAB1           <---------ANAC46                   <-----------GT1               <---------AHL20(2)    ------->TEIL                         <---------AHL20(2)         <---------ZAT14       <---------MYB52(1) ---------GT1                            --------->AHL20(2)         --------->ZAT14<-----------GT1 -->AHL20(1) ----------->GT1      ------>NtERF2     <---------ARR11(3)----------->GT1<-----------GT1   ttactgtatgtgtgcgtgtaaaatactaaatatcgacgactatatatataactagataatttagctatagtatagtatttttatttttcacccttggttt  620700                  ------->TEIL                 ------>MYB83                 --------->ARR14(2)                 ------>MYB46(1)               --------->MYB46(3)               <---------MYB52(2)               <---------MYB46(2)               --------->DEAR3(1)              --------->ANAC58                             *TSS              --------->ANAC46                        <-----------TBP              --------->ANAC58                        --------->AHL20(2)             ------->TEIL                           <-----------TBP        --------->ICU4       --------->ARR14(2)             ------>ZmHOX2a(1) <---------------AGL15                     <--       <---------ARR14(2)  <<<<<<<<<TBF1           <----------DOF2         --------->AHL20(2)--------   ttttatacatatatgcaccgaacctcttcttcttctcttcctcgtcttctctccttttatatatgtggaaaactgcatttattaagaacagtttagaaag  620800                                                        --------->At4g35610                                                        <---------At4g35610                        <-                                                       ----------->RAV1(1)                --------->ANAC58                                                     --------->At4g35610                  --------->ANAC58                                                     <---------At4g35610                ---------->DOF2        --------->MYB52(1)                           --------->ZAT2                    <------ZmHOX2a(1)  -------->P                                 >>>>>>>>>TBF1      ----------->GT1      <---------TOE2(3) ---------HVH21                 ---------->DOF2     ----------->RAV1(1)        --------------->AGL15 -->DOF2---------->DOF2        <------ZmHOX2a(1)  --------->At4g35610          <---------------AGL15<   tgtcaacccctaaaggaatgtttttagtttagaggaaagagagagaagaagaagcagcagcagaagttgttaatttgaagactatttgaggaaagacacc  620900                                                                                            ---------                         <---------ICU4                                                     ---------            ---------->DOF2 <-----------GT1                       <---------GLK1(2)         <--------  >>>>>>>>>RAP2.2       --------->AHL20(1)                     --------->DAG2               <-------- --------CCA1(2)        <---------AHL20(1)                    ---------->DOF2--------->ANAC58 ---------ARR11(3)     --------->YAB1                      --------->YAB1    --------->ANAC58<-------   tatatctaaatactcaaagttacaaaaatattacttcagaaaacagttccattagagagactcataaagcttctcatgtaagcctctcttgtaatttatt  621000         --------->ZAT14         <---------ARR14(2)         --------->ARR14(2)                                 <---------YAB1         <---------ZAT14                                 <---------WOX13(1)     --------->ANAC46                                 <---------YAB1 >AHL20(2)                <-----------GT1      <----------DOF2 >AHL20(1)             <<<<<<<<<<ATML1      ------>ZmHOX2a(1)                                       < -AHL20(2)             <<<<<<<<<<PDF2      <---------ALFIN1 <---------TOE2(3)               <-------- -AHL20(1)           <---------ZAT18     ------>ZmHOX2a(1) <-----------GT1     ----------->GT1<------ --AHL20(2)       <---------ANAC46 <<<<<<<<<TBF1  --------->YAB1    --------->AtLEC2  <-------TEIL  <   ctcatatacagaatactgttttgtgcatttactcttcttcttcctcctcctttcatatgattaacattcaatgcaaaattcttgtaaattcattttacaa  621100                         --------->ATHB51                            <---------TOE2(3)      <--------              <---------At4g35610           ----------->RAV1(1)    <---------AHL20(2)     ------>ZmHOX2a(1) ---------ANAC58        <---------YAB1     ----------->HVH21   <---------ICU4    --------->TOE2(1) ---GT1   --------->GLK1(2)               ------>NtERF2       <---------YAB1     --------->TOE1(1) ---YAB1 <---------GLK1(2)     <-----------GT1     <----------DOF2--------->AHL20(2)--------->SPL7 ---------ANAC58   <----------DOF2 ------>ZmHOX2a(1)        --------->YAB1      ------>ZmHOX2a(1)   tagcttatccaaattctgctacttttattattgtttcctctcgctgcgacattctttatttctcatcatttaatgttctctcctcgtacatcctctttgt  621200                            <---------AHL20(2)                     ------>MYB83                     ------>MYB46(1)                   --------->MYB46(3)                   <---------MYB111(1)                   --------->AtMYB61                   <---------MYB46(2)                   <---------MYB59                   <---------MYB111(2)                 ------>MYB46(1)                 -------->P --------->AHL20(2)                 ------>MYB83                --------->MYB55(1)                --------->ARR11(3)               <---------MYB111(1)              <---------TOE2(3)               --------->MYB46(3)           <---------DAG2               <---------MYB55(2)           <----------DOF2           <---------ANAC58               <---------MYB46(2)         ------>MYB46(1)  --------->ARR11(3)               <---------MYB111(2)        ------>MYB83     <---------GLK1(2)              <---------At4g35610        <---------ALFIN1  <---------ARR11(3)           ------>ZmHOX2a(1) --DOF2     <-----------GT1--------->AHL20(2)   <---------TOE1(3)     <---------ANAC58 --------->TOE2(3)   tctgtcttaagaattcacctaccaaaccatttatttctcatacccactttaagatttagtagatttttgttttcttgtcaaaatggtatcctaaaactaa  621300  Previous    Next  AGI:  At4g01460.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G61950.2); similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G61950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24331.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 620759    to: 622945    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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