Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->TOE2(3)                                       <-----------GT1                                     <---------AHL20(2)                            ------->GAMYB            --------->TOE1(3)                      <--------                           --------->MYB46(3)        --------->YAB1                <---------HSFC1(1)                          ---------->DOF2           <<<<<<<<<ARR1                  --------->HSFC1(1)                         ----------->RAV1(1)        <<<<<<<<<ARR2                  --------->HSFB2a(2)                         --------->MYB52(1) --------->ANAC46                       <---------HSFB2a(2)   acattcacatttgtaaatggcacatcccaacagcacgattttatcaacacaacaatcttaaatctaggcttcttcactacattttctagaagaaatcaat  545100              --------->ANAC58              --------->ANAC58            ---------->DOF2                                                         ------->GAMYB         <---------YAB1<------MYB83                                              ----------->RAV1(1)       <--------HAHB4  <------MYB46(1)                                        --------->ANAC58       --------------->AGL15                                                  --------->YAB1       <---------------AGL15                                                  --------->ANAC58       --------->YAB1 <---------TOE2(3)                                    --------->WOX13(1)      <---------YAB1  --------->MYB59     --------->AHL20(2)             <---------ATHB12 -ATHB12--------->TOE2(3)   <-----------GT1       --------->ARR14(2)   --------->WOX13(1)   tcaaacttatcattaaaagcaaattaggtttaacattcgctcaaaaaattcgaattcactgagaattagacttcaatcaatcgcaacagaacaaaaacta  545200                                            --------------->AtSPL8                                            <---------TOE1(3)                                            --------------->AtSPL3                   --------->ARR14(2)       <---------TOE2(3)                   <---------ARR14(2)      <-----------GT1                <---------KAN4(2)     -----                  <------ZmHOX2a(1)   --------->ICU4                    ----------->GT1         <----       ---------->CDC5           ----------->GT1                    --------->ZAT18<---------HSFB2a(2)       <-----------RAV1(2)    <---------ANAC46  ------->TEIL        <---------ZAT14--------->HSFB2a(2)    <---------At4g35610       ----------->RAV1(2)                 <---------At4g35610    <--------P    --------->At4g35610   <-------GAMYB --------->YAB1       <----------DOF2     ------>ZmHOX2a(1)   ggtttgagctcagaggggaaggatttggggttacctggtgaatattaacgtacttgaactcttctttgagcgcagggataatcctctcgaggtaagcggt  545300                                                                                              <------                                                                                --------->ATERF1(1)                                                      --------->DEAR3(1)        <------NtERF2 <------                                                     <------NtERF2             <---------RAP2.3(1)                                                    ------>NtERF2             <---------DEAR3(1)                                        <---------ZAT14                       <---------RAP2.3(2)                                        <---------ZAT18                      --------->At4g35610    <---------ANAC58                    --------->ZAT14------>NtERF2         <---------At4g35610    <---------ANAC58           <---------HSFB2a(2) --------->ANAC46  <-------MYC3<---------ANAC46    <---------ANAC46       <---------GLK1(1)   --------->HSFB2a(2)   ------->MYC3<---------DEAR3(1)-- ---->ARR14(2)             --------->GLK1(1)   <---------HSFB2a(2)  --------->O2<---------LBD16  ---- -----ARR14(2)  <---------LBD16--------->HSFB2a(2)--------->SPL7  <---------ALFIN1 <------NtERF2 <---   tttgaggcgttgagttttctcggcttcagatttctcgaccagtacagttccagacgccgagactttcaccacgtttctgagcggcggagagagcattcgt  545400           --------->RAP2.6(2)           --------->RAP2.3(2)                                          ------>NtERF2          --------->ATERF1(1)                                          --------->ANAC58         <---------At4g35610     ----------->HVH21                     --------->ANAC58     --------->ALFIN1           --------->LBD16                      <---------ATERF1(1)   <------ZmHOX2a(1)           <---------ANAC58        --------->ZAT14 --------->ANAC46 ---ANAC58--------->RAP2.3(1)  <---------ANAC46        <---------ZAT14--------->ATERF1(1)        ---- ---ANAC58<------NtERF2        <---------ANAC58        <---------At4g35610                       ==== ------->LBD16            <---------HSFC1(2)           --------->At4g35610          <---------At4g35610 ----->SPL7>>>>>>>>>AtERF-4   <-------TEIL---------->DOF2 <---------At4g35610       --------->At4g35610 ------LBD16              --------->HSFC1(2) --------->At4g35610   <------ZmHOX2a(1)--------->ZAT2---   gcggaggatggagccgctaatggtgagaaacgtccgtgaaacgaagaagcggaagactgcagaagcgaaggagacgccattgtcgaagctccaagtggat  545500                            <---------MYB46(3)                          <-------GAMYB                         --------->MYB52(2)      <---------HSFC1(2)                         <---------MYB46(3)      <---------HSFB2a(1)      <---------ANAC46<---------SPL7             --------->HSFC1(2)      <---------TGA1a<---------ANAC58            --------->HSFB2a(1)      ============================MYC_MYB       ------>NtERF2    <---------ZAT14  <---------ANAC58          *TSS                        <------ZmHOX2a(1)    --------->ZAT14 <------NtERF2         --------->MYB52(1)             <---------TOE2(3) ------>DOF2 <---------At4g35610       --------->ANAC46                  <---------TOE1(3) <---------MYB52(1) ===============bZIP_DOF<-------TEIL   >>>>>>>>>>>>>>>>>LFY    ----------->HVH21         <---------ANAC46 ------>DAG2 --------->At4g35610     <-----------GT1           --------->ETT(2)  <------ZmHOX2a(1)  <   aaagtgtgaagtgagagctctcggcgttcgttgttgattaaacccaatggcaccttcgtaatttgttgacagtttgaggataaggagttttccgtttagc  545600                                                             --------->ARR11(3)                            ------------>CBF        <---------YAB1           <---------AHL20(1)                     --------->YAB1                   <---------MYB46(3)       --------->YAB1       <------NtERF2        <---------YAB1       --------->AHL20(2)            < ----------DOF2     <---------MYB52(2)  --------->AHL20(2)   <---------ARR11(3)   <--------P     <---   ccctttaaaacataatatttcaactaaggccccaatatttgataatatactattatacttagagattttagataaaatataggggttgtttcatatgggc  545700                                                                               ======================                                                                               --------->ZAT2                                                                               --------->TGA1a                                                                               <---------ZAT2                                                                              ------>MYB83                                                                              -------->P                                                                             --------->ORA47(1)                                                                            --------->DEAR3(1)                                                                            --------->DEAR4(1)                                            --------->SPL7                  --------->DREB2C(2)                                            --------->ARR14(2)              --------->MYB46(3)                                            <---------ARR14(2)              <---------MYB46(2)                                            ------->TEIL                 <---------ALFIN1                                          <---------SPL7            <---------ARR14(2)                                         --------->ANAC46           --------->ARR14(2)                                         <---------ANAC55(2)     --------->ANAC55(2)    ----------->GT1                                ----------->GT1          ---------->ID1  --------->ANAC46        <--- ---------CCA1(2)              <---------TOE1(3)       <-----------RAV1(1) --------->DEAR3(2)    ---- ------MYB59<---------MYB52(1) <---------TOE2(3)--------->LBD16<-----------GT1------>MYB46(1)   *TSS   ctaaatctcagcccgtttactatttgggcttctaaggtataacccgtacccgtgtttttgttgttttacatatccacaccgacctgagaagagtcaaaaa  545800                                                                                          <----------DOF2                                                                                   <-----------HVH21                                                                                  --------->ANAC46                                                                                <-----------RAV1(2)                      ------>ZmHOX2a(1)                                        <-------TEIL                      <---------At4g35610                                 <---------LBD16 ===========                <---------ANAC58                                     ----------------------->TaNAC69(2)                <---------ANAC58               <----------DOF2     <----------DOF2<---------At4g35610          <----------DOF2  <----------DOF2   <---------At4g35610 <---------At4g35610<---------ZAT18 ====================bZIP_DOF             <---------At4g35610 <---------At4g35610 --------->At4g35610 -------ID1    ---------->ID1           <---------ANAC58    <---------ANAC58  <---------ARR14(2) ------->GT1 <-----------RAV1(1)        <---------ANAC58    <---------ANAC58  <-----------HVH21  ----   cgaaaaacctctcttttgtcgttcctctgctttcttcgatttgcttctgctttcttcgatttgcttctgctttcatcgcggttcaggtcactcttttctc  545900                              <---------TOE1(2)                             <---------ANAC46                           --------->O2                           <---------TGA1a                           --------->TGA1a                           ===============================bZIP_DOF                           ===============MYC_MYB                       --------->DEAR3(2)                       <------------AtMYB77                       --------->MYB46(3)                       ==============MYC_MYB                 --------->AtLEC2            =========================bZIP_DOF            <----------DOF2<---------O2           --------------->AGL15           <---------------AGL15          <-----------------AGL3          <-----------------AGL1    --------->At4g35610          ----------------->AGL1    <---------At4g35610        <---------ARR14(2) <---------ANAC46                                               <---------ANAC58        --------->GLK1(2)<-----------HVH21                                  <-----------GT1 ====================================bZIP_DOF  <----------DOF2         ------>ZmHOX2a(1)  <---------ANAC58 ----->ANAC46  <---------AtLEC2  <--------P   --------->TOE2(3)<-----------GT1  --------->YAB1   agccatggcgattcctttcatggaaaccgtcgtgggtaagcttcaaaacctttttctgagacattttactatcctgtttcactcatcgtatttcgttttt  546000  Previous    Next  AGI:  At4g01310.1    Description:  ribosomal protein L5 family protein. Identical to 50S ribosomal protein L5, chloroplast precursor (RPL5) [Arabidopsis Thaliana] (GB:O04603); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96601.1); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132) Range:  from: 543970    to: 545547    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01320.1    Description:  ATSTE24. similar to Os02g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047739.1); similar to CAAX peptidase [Hordeum vulgare subsp. vulgare] (GB:CAL26913.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39660.1); contains InterPro domain Peptidase M48, Ste24p; (InterPro:IPR001915) Range:  from: 545796    to: 549261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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