Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            ---------->DOF2           <                                                                     <---------ICU4                 -                                                                     -------->ATHB1         ---------                                                                     --------->YAB1 --------->ARR11(3)                         <----------DOF2                            <---------ATHB12<---------GLK1(2)                     <----------DOF2                                --------->ICU4  <---------ARR11(3)                 ------>ZmHOX2a(1)                           --------->AtLEC2     ----------->ARR10--             <-----------GT1                          ---------->DOF2--------->ATHB12--------->GLK1(2) ----ANAC55(2)  --------->TOE2(3)            <-----------RAV1(1)    <---------YAB1--------->ICU4   <-   taaaacgtctcagtgtttccttactttctttctctctcggtgtgaaaatgttgttcaaaagccctgcataatcattgaaaggcaaagattcttagcacta  531300                                                                    --------->RAP2.6(2)                                                                    ----------->RAV1(1)                                                                 --------->RAP2.6(2)                                                               <------NtERF2                        <                                                               --------->At4g35610                  <                                                               --------->ZAT2  ------>MYB46(1)      <                                                               <---------At4g35610        --------->HSFB2a(2) ---------AHL20(2)                         --------->TOE2(3)   <---------ZAT2  ------>MYB83        -- -------->AHL20(2)                        ----------->GT1    --------->ATERF1(2)          <---------HSFB2a(2) >ZAT6       ---------->DOF2     --------->CCA1(2)           <-----------RAV1(2)        ============= ------->AHL20(2)             ----------->ARR10              <---------ATERF1(2) <---------ATHB12 <-- --------AHL20(2)             <---------TOE2(3)              ===================RAV     ------>ZmHOX2a(1)   aaaaaattttggacataaagaagtcttaagttgagatttgagaaacgttatatatactcagagccagcagccacaaaaaccaaatgactcctctcgaatt  531400           <------ZmHOX2a(2)        <------MYB46(1)        <------MYB83      <--------P    <---------MYB46(3) <---------DOF5.7(2) ------------>AtMYB77 --------->MYB52(1)                                                                 <---------At4g35610 ---------WRKY38(1)                                                                 --------->At4g35610 ---------WRKY45                                   --------->GLK1(2)                --------->ZAT2 ---------WRKY12 --------->WRKY12   --------->AHL20(2)       --------->DAG2         <---------ZAT2 ------->WRKY18(1)<---------WRKY18(1)              <-----------ARR10            <---------STY1(2) =================HOX2a_HOX2a--------->ANAC46     <---------GLK1(2)       <---------CCA1(2)     <---- ---------HVH21  --------->WRKY38(1)<---------AHL20(2)      ---------->DOF2     --------->STY1(2)<---   ggtcaacggttggatcaccttgaccatacacaaaccatataaatctcagagagaatctaacaaaaagtttcaactcaaatctagctagctgtgtcaattt  531500                                                                                           <------ZmHOX2a(1)                                                                              <XXXXXXXXXXXXXXXXXXXXXMIR4221                                                                 <-----------------AGL1--------->TOE1(2)                                                               ------>ZmHOX2a(1)       --------->TOE2(2)  <----------DOF2                                        --------->ARR11(3)  --------->ANAC58 -------GT1                                              <---------ARR11(3)  --------->ANAC58       < ------At5g28300    <---------At4g35610          --------->At4g35610     --------->ANAC46<---------TOE2(2)   accactttcaagacaaatctctagctcattagcctcgttcccttgaaaaacagctctaaaatctccttcaagtataggcaagaatacaacgtaggaagac  531600                                      --------------->AGL15                                   <----------DOF2                          --------------------->WRI1                        <---------HSFB2a(1)                      <---------GLK1(2)                                <----------DOF2                      --------->ARR14(2)                          --------->GLK1(2)           ------>ZmHOX2a(1)      <---------ANAC58               <---------GLK1(2)        ------>ZmHOX2a(1)--------->TOE2(3)                    --------->ANAC46   <---------At4g35610<---------ARR14(2)<---------YAB1        --------->ANAC58     <---------ZAT18 -------TEIL  ------>ZmHOX2a(1)   <---------ANAC58            --------->ANAC58<---------MYB52(1)<----   gattcatctcctcctcctaaaccagaacctttgtttgcttctacgattagaaactgagtctcacaaggaatctctttcccattagtccccattctctgag  531700      --------->YAB1      --------->ANAC46      --------->ANAC55(1)                           ----------->GT1    <---------ALFIN1                               --------->ANAC58               --------->ANAC58  <---------ALFIN1                                 --------->ANAC58               --------->ANAC58 --  ----------->RAV1(1)                          ------>NtERF2                      --------->ANAC55(2) --------->MYB46(3)                 --------->TOE1(3)                  --------->TOE1(3)           <- -------HVH21<---------AHL20(2)     --------->TOE2(3)    --------->YAB1--------->TOE2(3)       <-----   tcacccacacataatttaaactggaagacacacataaaccttaggtctctgccaaggaaaaataacatttacaccttaagcctcaagtaattcaacagat  531800                                                                                                  ---                                                                                                 <---                                                                                                <----                                                                       ----------->GT1        -------                                                                  <---------ZAT2              -------         <-----------GT1                                          --------->At4g35610        --------        --------->AHL20(2)                                        --------->ZAT2          --------->LBD16 ----------->HVH21                                      ------>ZmHOX2a(1)                <---------HSFB2a(2) ------->ANAC55(2)        ---------->DOF2              --------->TOE2(3) <--------P      --------->HSFB2a(2) --------ANAC55(2)       <------ZmHOX2a(1)     <---------ZAT18   --------->GLK1(2)      <---------LBD16 ----GLK1(2)        --------->ALFIN1    --------->ZAT6----------------->AGL1     --------->ARR11(3) -   tatgtgacatttaactacagatgtgtaggaaagggattttgaacagtagtggagtttccttagggagaagctggggtaactaagacattctcccgaacgc  531900                                     <---------DEAR3(2)                            <-----------ARR10                            <---------ARR14(2)                            --------->GLK1(2)   --------->LBD16                           ------>MYB46(1)     <---------ANAC46                         <---------MYB111(1)  --------->At4g35610                         --------->AtMYB61    <---------At4g35610                      <---------ALFIN1        <---------LBD16                      --------->DEAR3(1)   <---------At4g35610                      --------->AtMYB61   <---------bZIP60(2)           --------->WRKY38(1)       <------MYB83 ------>LBD16        --------->MYB46(3)----------->HVH21                             --------->ANAC46 ------ANAC46    ------>MYB46(1)     <------MYB46(1)                                ------->TEIL -------------------TaNAC69(2)      <---------DEAR3(1)                           <---------MYB52(2) -->ANAC58 ----------->HVH21--------->ARR14(2)------>NtERF2                      --------->ANAC58 -->ANAC58<-----------HVH21------>MYB83----------->TGA1            --------->ARR14(2)--------->ANAC58 ->SPL7   --------->At5g28300       <---------MYB46(3)             <---------ARR14(2)--------->ANAC58 -------->REM1(2)------>MYB83       <---------DREB2C(2)--------->AHL20(2)        --------->ANAC58   cgtgaagaacacggtgacctagcaccaccaaatctgagtcggtgacgctgcggaagaaaaaatagtgagaaacctcgagactcacgaacgctactctcga  532000                                                                            <---------YAB1                                                                       <---------ICU4                         --------------->AtSPL8                    <---------AHL20(2)              <---------ANAC58                                 <---------AHL20(2)               -----              <---------ANAC58                                 --------->AHL20(2)               <----             <---------ZAT18      <---------ZAT6              --------->AHL20(2)   --------->MYB46(3)         <---------ICU4  <---------------AtSPL8             --------->TOE2(3)    <---------WRKY18(1)     <---------AHL20(2)  --------->ARR11(3)               --------->ICU4<------------CBF  -----------  ----------->GT1    ---------->DOF2                --------->MYB59--------->AHL20(2)  <---------ATHB12   gagtgagttaattagtgcatgcgaaaagatgtactagtattactaaaaacgagttaagtcaacattaatttaaacattgtgtttgaccactgatcaatag  532100                                                                                         <-------PIF5                                                                                         ------->PIF5                                                                                         <-------MYC4                                                                                         ------->MYC4                                                                                         ------->MYC2                                                                                         ------->PIF4                                                                                         <-------MYC2                                                                                         <-------PIF4                                                                                        --------->ANAC46                                                                                  <---------ANAC46                                                                               ----------->HVH21                                                                              <-------MYC3                                                                              ------->MYC3                                                                             --------->TGA1a                                                                             --------->ANAC58                                                                             <---------O2<-------MYC3                                                                             --------->O2------->MYC3                                                            <XXXXXXXXXXXXXXXXXXXXMIR774B--------->ANAC55(2)                                                          <---------MYB46(3) <---------TGA1a                                                 <<<<<<<<<<<<<<<<<LFY        <---------ANAC55(2)                                                 >>>>>>>>>>>>>>>>>LFY        --------->bZIP60(1)                                                --------->ANAC46             --------->ANAC58                                  --------->ALFIN1       <--------P          --------->ANAC46                 ----------------->AGL1         --------->ANAC58             --------->ANAC55(2) ---->At4g35610 <-----------------AG            --------->ANAC58      <-----------GT1 <------------OsbHLH66 -----At4g35610 ------->TEIL      <---------MYB52(1)     ==============================MYC_MYB ->CBF  <----------DOF2 ----------->GT1 <---------MYB59<---------MYB46(3)  <-------------DYT1     ---   ctgatttgggctttaatggacctatagggtaaaaacgttgggcctaatacaagccactggttgtttatgtttttatctcacgtgacttacacgtgctatc  532200  Previous    Next  AGI:  At4g01265.1    Description:  raffinose synthase family protein / seed imbibition protein-related. similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to unknown [Populus trichocarpa] (GB:ABK95734.1); contains InterPro domain Raffinose synthase (InterPro:IPR008811) Range:  from: 530021    to: 531692    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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