Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------ANAC58                                                                                    <---------ANAC46                                                                                    <---------ANAC58       --------->CCA1(2)                                                           --------->MYB59      --------->ARR14(2)                                                      <---------YAB1      <---------ARR14(2)                                                     <---------AHL20(2) ------YAB1                                                                  --------->AHL20(2)     < ----------->AGL15                                        ---------->DOF2   --------->YAB1  <-------- ------------AGL15                                      --------->YAB1  <---------AHL20(2)  <-------- ------------>AGL3                            <---------AHL20(2)        --------->AHL20(2) <---------ANAC58 -------------AGL3                     <---------ZAT6   <---------AHL20(2)  <---------AHL20(2)   <--- -->GLK1(2)    <----------ID1    <---------AHL20(2)     --------->AHL20(2)  --------->AHL20(2)   <--- --GLK1(2) ---------->DOF2<---------At4g35610 --------->AHL20(2)      <----------DOF2      <---------ANAC58   taatagtggatacaaaagaaacaaatacagcttattttatagtgtcattttaatctaataaaaagacttactctttaattaaaattgggtattgcttttt  521600                                                                       <---------AHL20(2)                                                                   --------->AHL20(2)                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                                              <---------AHL20(2)                                                              --------->AHL20(2)                                                              <---------YAB1                                                           <---------AHL20(1)                                                        --------->AHL20(2)                                                      <---------AHL20(2)                                                   --------->ARR11(3)  --------->AHL20(2)                                                   <---------ARR11(3) <---------AHL20(1)     <-------    <---------MYB52(1)                             <---------AHL20(1) <---------AHL20(2)    >>>>>>>>CAMTA3   <<<<<<<<<<AtWER                               --------->AHL20(1)<---------AHL20(2)       <--------   <-------GAMYB               --------->ICU4    <---------AHL20(1)--------->AHL20(1)--------->ANAC58 ---------At5g28300           <---------TOE2(3)  <---------AHL20(2)<---------AHL20(1)--------->ANAC46 --DOF2            <---------AHL20(2)         --------->AHL20(2) <---------YAB1      --------->ANAC55(1) -DAG2--------->MYB52(2)<XXXXXXXXXXXXXXXXXXXXMIR849--------->AHL20(1) --------->AHL20(2)    <-------- ------ANAC58      <---------YAB1          --------->YAB1  --------->AHL20(1)        --------->ANAC58 ------ANAC58 <---------AHL20(2)   <---------AHL20(2) --------->AHL20(2)   <-----------GT1  <--------   cttaccgttagtgtattttatattattccattaatgtttatttagtcataaaatatttttatatattattaaattatttacaaacccacgcaacgcgtga  521700                                                                                     --------->ANAC46                                                                                  --------->ZAT14                                                                                  --------->ZAT18                                                                              --------------->AtSPL3                                                                              --------------->AtSPL8                                                                              --------->ZAT6                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <---------KAN4(2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <---------ARR14(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      --------->ARR14(2)         ---------->DOF2 --------->ANAC58 <---------ZAT18      ------>ZmHOX2a(1)                      ----------->GT1     --------->ANAC58 <---------ZAT14 ----HVH21        --------->YAB1      --------->TOE1(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -ANAC58      <---------YAB1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -ANAC58     --------->AHL20(2)       --------->TOE2(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -ANAC55(2)  <---------AHL20(2)    <-----------GT1       <-----------GT1  <-------GAMYBxxxxxxxxxxxxxx   gacatttcctagtatttttataagaatatgcacaaaataaccatagattgtaaaagaattaacaaactagccatgctgttacagtacactctatttcttc  521800                                             <---------MYB52(1)                                           --------->ANAC55(2)                                           --------->ANAC58                                           --------->ANAC46                                       <-----------GT1                                            xxx                                   --------->AHL20(1)                                      xxxxxxxxxx                                   <---------AHL20(1)                                  <----------ID1                                  <---------AHL20(2)                                   ----------->GT1              <-----------GT1 --------->AHL20(2)        <---------ICU4                 <---------ANAC46         <----------DOF2    <----------DOF2--------->ANAC55(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxx>smallRNA(si3)    <---------DAG2 --------->ANAC58    --------->ANAC46 <xxxxxxxxxxxxxxxxxxxx   acttgcaattacttttatacccatttcgaactttatatatattacacgttattttccaaaattacacaaaacacttagatgattctatggcgaaaaactt  521900                                                                                  --------->GLK1(1)                                                                                 --------->ARR14(2)                                                         <---------ARR11(3)      <---------AGP1                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      --------->AtMYB61         <---------CCA1(2)                                                      <---------ALFIN1      ----------->RAV1(1)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   --------->AtMYB61       --------->AtMYB61                                                   ------->GAMYB           ------->GAMYB                                                  <---------MYB55(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  --------->MYB46(3)      --------->MYB46(3)                                                xxxxxxxxxxxxxxxx>smallRNA(s)--------->MYB52(1)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---------ARR14(2)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <---------ALFIN1             <---------MYB55(2)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------ZmHOX2a(2)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------GLK1(1)                                             --------->AtMYB61    --------->AtMYB61   xxxxxxxxxxxxxxx                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ARR11(3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->AGP1        --------->LBD16                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ARR11(3)       --------->ANAC46                   --------->AtMYB61      --------->MYB46(3)   <----------DOF2    --------->ARR14(2)                    <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ------->TEIL    --------->ZAT6        --------->DEAR3(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    --------->GLK1(2)                    --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <--    <---------ARR14(2) <---------ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxx>smallRNA(i)<---------CCA1(2)----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<x xxxxxxxxxxxxx>smallRNA(se3)    <----------DOF2--------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxsmallRNA(si3) -------->P    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->YAB1------>ZmHOX2a(2)   ccgacgaatccgaaacaaactaccactcatctctctttcttccaccaccacaaccaccacatcttccaccatcacaaccaccagatctctttttcgataa  522000             --------->TOE2(3)          --------->MYB52(1)  <---------GLK1(2)         xxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>NtERF2--------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <---------AHL20(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <---------GLK1(1)   --------->At4g35610     <---------WOX13(1)            --------->GLK1(1)                       xxxx   --------->ATERF1(1)  <---------YAB1                  --------->ARR11(3)                       ----   <---------At4g35610<------------CBF                  <---------ARR11(3)                       <---   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------HSFB2a(2)                            <--- x>smallRNA(i)<---------MYB52(1)                  --------->HSFB2a(2)             <---------YAB1xxxxx -------REM1(1)    <---------AHL20(2)     <---------MYB52(1)      --------->AHL20(2)      ----------- >smallRNA(le3)  <-----------TBP         <---------------AGL15    <---------AHL20(2)   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->TOE2(3)    <------------------------ANAC81  <-----   atgtaggctgccaaacgttatttatattgatagattatttctcccttaatttgtagaagatttctcattttattttgttcgattttgattttttttggaa  522100                                                                    ------->MYC3                                                                    <-------MYC2                                                                    <-------MYC3                                                                    ------->MYC2                                                                   --------->O2                                                                   <---------O2                                                                   --------->TGA1a                                                                   ==============================bZIP_DOF                                                                   <---------TGA1a                                                           <---------AHL20(2)                                                           --------->AHL20(2)     <xxxxxxxxxxxxxxxxxx         <---------YAB1                                   --------->AHL20(2)      --------->RVE1(1)      <---------MYB52(1)                              <---------AHL20(2)         --------->ARR11(3)  --------->LBD16                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---------MYB52(1)==============================bZIP_DOF xxxxxxxxxxxx>smallRNA(i)                      --------->ANAC58    --------->ANAC58 ----->HSFB2a(1)       <------------CBF        --------->bZIP60(2) <---------ANAC55(2) ------HSFC1(2)      <---------AHL20(2)        --------->ANAC46    --------->ANAC46 ------HSFB2a(1)    --------->AHL20(2)         --------->ANAC58    --------->ANAC58          <------- xxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->MYB46(3)     --------->ANAC55(2)<----------DOF2 ---------->WRI1    <---------AHL20(2)    <-----------GT1 <---------AHL20(2)     <---------ARR11(3) ----GLK1(2)    <----------DOF2     <---------AHL20(2)--------->AHL20(2)         --------->GLK1(2)   tctccgtcgttatgttttctttttaaattgtatgttattttttttaaccacgttatttttttaaattacacgtgataactgaaaatctctttctgtcaac  522200                               --------->YAB1                            --------->YAB1                           <---------YAB1                         --------->YAB1                            --------->ARR11(3)                        --------->AHL20(2)                         --------->AHL20(1)                        <---------AHL20(2)                 <---------YAB1              --------->MYB52(1)                   <---------YAB1  <---------ARR11(3)      <---------    <---------DAG2  <------ZmHOX2a(2)             --------->ARR11(3)            --------->YAB1    <----------DOF2--------->ARR11(3)             <---------ARR11(3)           <---------YAB1    <--- xxxxxsmallRNA(si3)<---------ARR11(3)            --------->RVE1(1)--------->CCA1(1)       <---------ANAC58 --ETT(2)     <-----------GT1 <---------YAB1     --------->CCA1(1)--------->RVE1(1)       <---------ANAC58   atactactttttcatataacagatcatttattatcataacatattagaaaaatatcattttttgataaatatcttgttattctcataaacttgctttcga  522300                                                                                                 <---                                                                         --------->MYB52(2)      ----                                                                       <--------P               <----           --------->ARR11(3)              --------->AHL20(2)          <---------MYB52(1)       <----           <---------ARR11(3)             <---------YAB1             <---------MYB46(3)       -------    ----------->GT1                    <---------YAB1               --------->ICU4            <------ -DOF2 ---------->DOF2               <---------At4g35610       --------->YAB1                <------- -------DOF2               --------->AHL20(2)  <---------AHL20(2) <---------ICU4        <---------AHL20(2)   tttaagttgtaaagacatttttgtattttttatatagtcatatgattatttattcacataaaaactgataatggttagttttttttttttttaattctat  522400                                                                          <---------ZAT14                                                                          --------->ZAT14                                                                          <---------ZAT18                                                                          <-------TEIL                                                                          --------->ZAT18                                                                       <---------ANAC58                                                                       --------->TGA1a                                                                       <---------O2                                                                       <---------ANAC46                                                                       <---------ANAC58                                                                       <---------TGA1a                                                                <---------O2                                                                <---------TGA1a          <---------O2                                                                --------->O2             <---------ANAC46                                                                --------->TGA1a          ============                                      <-------GAMYB           <---------ALFIN1           --------->O2 -----HAHB4                           ====================================MYC_MYB        <---------TGA1a ----->YAB1                           ===========================================MYC_MYB --------->bZIP60(1) -----YAB1    <---------ARR11(3)     --------->MYB55(2)     ------>ZmHOX2a(2)            <---------bZIP60(1) -----AHL20(2)--------->ARR11(3) <---------AtMYB61         <------ZmHOX2a(2)             --------->TGA1a -------->AGL15          <---------ARR14(2)               <---------ARR11(3)  <-------PIF5<---------- ---------AGL15          --------->ARR14(2)     <---------GLK1(1)      ============================== ----------AGL3        ------->TEIL  <---------MYB46(3)   --------->ARR11(3)  ------->PIF5<----------   aattagtttctaatattatcttatgtatatatgctatggtggttacctagaaatctcttagatcccacttgagacgtgcacttgcctagtcgcgtcagac  522500  Previous    Next  AGI:  At4g01240.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39658.1); contains domain SSF53335 (SSF53335) Range:  from: 517795    to: 521972    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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