Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------LBD16                                                                 ------>ZmHOX2a(1)                                                              ==================================HOX2a_HOX2a                                                              <------ZmHOX2a(2)                                                              --------->GLK1(2)                                                             --------->ARR11(3)                                                             --------->ARR14(2)                                                             <---------ARR11(3)                                                             <---------ARR14(3)             ---------                                                             --------->ARR14(3)       --------->LBD16                                                             <---------ARR14(2)       ------>NtERF2           <------NtERF2                                    --------->GLK1(1)        --------->DEAR3(1)          ------>NtERF2                                     <---------GLK1(1)  --------->ARR14(2)         --------->ANAC46                                  ----------->ARR10   <---------ARR14(2)         --------->ANAC58                             ---------->DOF2<-----------RAV1(2) <------ZmHOX2a(1)         --------->ANAC58                       ----------->GT1------>ZmHOX2a(2)  --------->ANAC46<--  <---------KAN4(2)         <------ZmHOX2a(1)  <---------ANAC46=================================HOX2a_HOX2a   agggaatagtcgcgccatttggattgagaaggagagagtttgtttggagacgggaataaaggagatcctgcccagggtaagaatacgccgaggataacga  515500                            --------->At4g35610                            <---------ZAT2                          <---------RRTF1(2)                          <---------ANAC58                          <---------ANAC58                          <---------ANAC46                          <---------RAP2.6(2)                          <---------RAP2.3(2)                         <---------LBD16                       <---------MYB52(1)                      <-------GAMYB             <------ZmHOX2a(1)  <---------ANAC46           --------->ALFIN1 <---------At4g35610 >MYB52(1)<------ZmHOX2a(1)<---------RAP2.3(1)                       ---------->DOF2 ----ZmHOX2a(1) <------ZmHOX2a(1)--------->REM1(2)    <---------TOE2(3)    <------ZmHOX2a(1)   ggagagcgagaaggaggaggagaccgttgcggctgagtagagagattggacgatttgagattgaagaagtggaaagaggagaagaagagaatgggtttgt  515600                      <---------REM1(1) ------>NtERF2                  <---------ANAC46     --------->ANAC46                <---------DEAR3(1)     --------->ANAC58      <---------At4g35610                <---------MYB46(3)     --------->ANAC58--------->At4g35610              <-----------HVH21      <---------RAP2.3(1)     --------->At4g35610             <------MYB46(1)       --------->At4g35610 --------->ZAT2             <------MYB83          <---------At4g35610 <---------At4g35610            <---------AtMYB61     <-----------RAV1(1)  <---------ZAT2           <---------WOX13(1)  <----------DOF2<---------AHL20(2)                              -------   gaatgggttttggattggtcgctggtgaaggaacttttgctgcgccattttttttgtagctggagatgaacaaaatttgagaagacttgttttaaatcac  515700                                                                                                  <--                                                                                    <------ZmHOX2a(2)                                                                                    --------->CCA1(2)                                                                     <---------ANAC58       ---------                                                                     <---------ANAC46    <---------YAB1                                                                     <---------ANAC58------>ZmHOX2a(2)                                                          --------->LBD16          <---------ARR11(3)                                                         <---------HSFB2a(2)       --------->AGP1 <--                                                         <---------HSFC1(1)        <---------ARR14(2)                                                         --------->HSFB2a(2)       <---------AGP1 <--                                                        <---------LBD16            --------->ARR11(3)                                                      --------->GLK1(2)            --------->ARR14(2)      ----------->GT1       <------ZmHOX2a(1)        --------->GLK1(1)            <---------CCA1(2) -  --------->MYB59   <---------ZAT6                   <---------GLK1(1)        --------->ALFIN1   <--- -->YAB1   <---------ARR14(2)                --------->GLK1(2)     <---------YAB1----------->ARR10<--   aagttagggagtgaattcgagagtgttagaggaaatatacagagaagaatttgggaattctggaaaattttgagtgggaagtgtagatctgatgatatgt  515800           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         --------->ARR14(2)                                                                     <----         --------->ARR14(3)                                                                    <-----         <---------ARR14(3)                                                                    <-----         <---------ARR14(2)                                                                    <-----        <---------GLK1(1)                                                                      <-----        --------->GLK1(1)                                                                    <-------   <---------ANAC46                                                                         --------- --------->REM1(2)                                                                          <-------- -------ANAC58                                                                             ------>ZmHOX2a(2) >CCA1(2)<---------ARR11(3)                                                               <---------At4g35610 -------ANAC58                                                                           <---------AGP1 -------ANAC46                                    <---------AHL20(2)                     <---------ARR14(2) -------->ALFIN1                  <-------GAMYB  <---------YAB1                    --------->ICU4 ----TEIL--------->ARR11(3)      <---------MYB46(3)  *TSS  <-----------GT1         <-----------RAV1(1) -------AtLEC2       ----------->GT1       ----------->GT1<-----------GT1    <--------P  --------->ARR14(2)   gcgtggagggagatctcaaaacagagtaacaatggcgattgggaagtgtttattatttgtttacccgttttaaaatcgggttgtaatgttggatctgtcg  515900         <---------ANAC58   <------------CBF -----DEAR3(2)                                                           <---------MYB46(3) ----At1g77200                                                          <--------P ----DEAR4(1)                                                     ---------->DOF2 ----DEAR3(1)                                                   --------->DOF5.7(2)               --- ----DREB2C(2)                                                 <-------GAMYB                      --- ----HVH21           <---------TOE2(3)                         --------->TOE2(3)           ---------- -->HVH21<---------ANAC58---------->DOF2                      --------->MYB52(2)         <-----------RAV1(1) ---RAV1(1)      <------------CBF             <----------DOF2 <---------MYB46(3)         <---------MYB46(3)   gtgtctattgggcttgaaacattgaagttaagcccattcaaatgtgttcttttttttgttttgttcgttaaagggttgttttttgtgtgatttgttgcta  516000           --------->AHL20(2)       ----------->GT1  <---------At4g35610                                                                       ---------  --------->At4g35610                                                         --------->AHL20(2) ------>YAB1               --------->TOE1(3)           <---------GLK1(2)      --------->ATHB51 ------>TOE2(3)--------->AHL20(2)     <---------AHL20(2)                      <---------AHL20(2) >ID1---------->DOF2       --------->TOE2(3)      <----------DOF2    --------->REM1(2)      ---------   tcttagctaaagaaaaaataaacacataaacttaactaatttaaactgtaagctttagaatttcatagctatgtagagaattattttcaaggcccagcca  516100                   <---------At4g35610                   --------->At4g35610    --------->ARR14(2)         <---------------------WRI1                 --------->ATHB12    <---------ARR14(2)  <---------ANAC58                                 --------->ICU4   <---------CCA1(2)    <---------ANAC58--------->MYB46(3)          --------->ANAC58 >ANAC58   ---------->DOF2    <------ZmHOX2a(1)                     --------->ANAC58      ---------->DOF2 >ANAC58 --------->ANAC46    <----------ID1                 <------ZmHOX2a(1)         ---------->DOF2   attttgtatccacaaaagtttagatgacttgaggacgaagtaaccaaaaccacatgaacagaggaatgactcgaaatgatttggactctaaagaaagaat  516200                          ------->TEIL                          <-----------ARR10                             ------>ZmHOX2a(2)                          <---------ARR11(1)                          <---------ARR11(3)                          --------->GLK1(2)          <---------MYB46(3)<------ZmHOX2a(2)                         <---------ARR14(1)       <---------ANAC58    --------->ARR14(2)                --------->ANAC58                  <---------ANAC58    <---------ARR14(2)                --------->ANAC58                <---------YAB1        --------->ARR11(3)--------->At4g35610   aaatgaatgaactaaactaagcaaatcgaatctaattcaatttcgatgttttgagtggtttggctaatgagggatcttacttaaaaacttagcttcaaaa  516300                       --------->YAB1                                              <---------ANAC46                      <---------ATHB12                                            <------NtERF2                <---------At4g35610                                    --------->DAG2       <--------                --------->At4g35610            --------->WOX13(1)     ---------->DOF2       <--------      --------->ICU4--------->WOX13(1)       <------ZmHOX2a(2)     --------->YAB1------>NtERF2   acttggtaatgtttcttcatctcaatcacagccttctctgcaattggatcaatctcatcttcatacttctcataaagcattggcaccgtgtgaattagta  516400  Previous    Next  AGI:  At4g01220.1    Description:  similar to RGXT1 (RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 1), UDP-xylosyltransferase [Arabidopsis thaliana] (TAIR:AT4G01770.1); similar to putative alpha 1,3-xylosyltransferase [Linum usitatissimum] (GB:AAZ94713.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 513213    to: 515853    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01230.1    Description:  reticulon family protein (RTNLB7). similar to reticulon family protein (RTNLB5) [Arabidopsis thaliana] (TAIR:AT2G46170.1); similar to unknown [Populus trichocarpa] (GB:ABK92738.1); similar to unknown [Populus trichocarpa] (GB:ABK94480.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 516264    to: 517408    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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