Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------ARR14(2)                                            --------->ARR14(2)                                            --------->GLK1(2)                    <---------ANAC58       --------->ARR14(2)                    <---------ANAC58       <---------ARR14(2)                 --------->ANAC46      --------->LBD16          --------->GLK1(1)              ------                <---------LBD16        <---------LBD16          <---------GLK1(1)        <----------DOF2       --------->WOX13(1)            <---------LBD16        --------->LBD16      <---------GLK1(2) >ZmHOX2a(1)------>ZmHOX2a(1)     <---------CCA1(2)    --------->WOX13(1)      <---------TOE2(3)   --   cattgatgtcaatccttctacggcttgagaatgctcgtctctggggaatcggcatttcaatctgggaaatcggacaaggtttagattatttctttgatct  455400                                                                                            ------->TEIL                                                                                           <---------CCA1(2)                                                                                      <----------DOF2                                                                                     <---------DAG2                                                     ------>ZmHOX2a(1)              <---------HSFB2a(1)                                                   =====================================HOX2a_HOX2a                                                 <---------ARR11(3)                 --------->HSFB2a(1)                                     <---------TOE2(3) <----------DOF2            <---------ARR14(2) >ZmHOX2a(2)                     --------->TOE2(3) ------>ZmHOX2a(2)              --------->ARR14(2) ------->YAB1              <---------YAB1  <---------YAB1   <---------ZAT18      <------ZmHOX2a(1)   attgtaagttccatacattgcatcatgttatgttttcttaatgttatacttgatcctctttgttcacttaaatcaaatgctgaggaaccttttgtatcta  455500                                      ----------->GT1                              <------ZmHOX2a(1)                          ---------->DOF2                     --------->HSFB2a(2)                                                <---------ALFIN1                     --------->HSFC1(1)                          <XXXXXXXXXXXXXXXXXXXXMIR172A/B    --                     <---------HSFB2a(2)                        <XXXXXXXXXXXXXXXXXXXXMIR172C/D     --                     >>>>>>>ZML2     --------->MYB59 <---------HSFC1(2)               ----------->RAV1(1)                     --------------->AGL15           --------->HSFC1(2)     <---------GLK1(2)      --            <----------DOF2--------->DAG2         <---------At4g35610       --------->ARR14(2)-------   gtctagtctctgttctttgtgttctagataaaggacattttggtaaatatgcagaggcttctcttgaagcatcttcaatattctctggccacacatttga  455600                                                                                         --------->AtLEC2                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                     <-----------HVH21                                                                                   ------->MYC2                                                                                   <-------MYC3                                                                                   ------->MYC3                                                                                   ------->MYC4                                                                                   <-------PIF5                                                                                   ------->PIF5                                                                                   <-------MYC2                                                                                   <-------MYC4                                                                                  <---------O2                                                                                  --------->ANAC55(2)                                                                                  --------->ANAC46                                                                                  --------->TGA1a                                                                                  <---------TGA1a                                                                                  --------->O2                                                                            --------->KAN4(2)                                                                           --------->HSFC1(2)                                                                           <---------KAN4(1)                                                                           --------->KAN4(1)                                           --------->ANAC46                <---------HSFB2a(1)                                         --------->REM1(1)                 --------->HSFB2a(1)      <                                         --------->ANAC46                  <----------TaMYB80      <-                                        --------->ZAT14                   ---------->TaMYB80       -- ------->ANAC58                      ------>ZmHOX2a(1)                    <---------ARR14(2)       -- ------->ANAC58                    <---------ZAT18                        --------->ARR14(2)      --- ------->AtLEC2                    --------->ZAT18                        <---------KAN4(2)       <-- ---->HVH21                  <----------DOF2--------->AtMYB61           --------->LBD16 --------->WOX13(1)   catgcaatttcggactaagtaagtcactatgctttagtcctctacaccaaaacatgatcaagaggtatctcatccgaatattccacgtgtcaagcaagcg  455700                                  <---------HSFB2a(2)                                  --------->HSFC1(1)                                  --------->HSFB2a(2)                                  <---------HSFC1(1)                            <---------ZAT2                            --------->ZAT2                            <---------At4g35610                            --------->At4g35610                        <-----------TGA1                        <-----------HVH21         --------->ATHB12 <-----------bZIP910(2)        --------->ICU4 --------->ANAC58       <---------WOX13(1)--------->TGA2(2)      <------------CBF --------->bZIP60(2)     <------ZmHOX2a(1) --------->O2 <---------ANAC46      --------->TGA1a ------NtERF2          --------->ANAC58                                                             < --------MYB46(3)      <---------O2                                 *TSS  <---------ALFIN1        --- ---->NtERF2           --------->ANAC46                           <----------DOF2           --------- ------->MYB55(2)      <---------TGA1a                            <---------DAG2            <-------- ------>ALFIN1      <---------ZAT18   --------->MYB52(1)   ------>ZmHOX2a(1)              <---------YAB1 -------DEAR3(1)    <---------WRKY38(1)     ------------>CBF----------->HVH21    <<<<<<<<<TBF1<------   gtggctaggattgattacacagtccacgtcagctctctagaaacggctcaatgctcttgtccttgacacttttcttccacttcttcttcatcatctttaa  455800                          <---------ZAT14                          --------->ZAT18                                                        <---                          <---------ZAT18          --------->GLK1(2)                         <-------                    --------->ANAC55(2)            --------->ARR14(2)                        <-------      ---------->DOF2    --------->ALFIN1          <---------ARR14(2)                   --------->LBD16 ---------MYB52(1) <---------LBD16                <---------GLK1(2)                    --------->RAP2.6(2) ------>ATHB12    --------->CCA1(2)            <------ZmHOX2a(1)                       --------->ANAC58 >TOE2(3)        --------->ARR11(1)           ----------->GT1                          --------->ANAC58 --DOF2--------->DAG2  <---------ANAC46<---------REM1(1)                               --------->ANAC46 ---AHL20(2)   <---------YAB1          <---------ANAC46             <-----------------------TaNAC69(2)   tcgttgggaaaagtttgatgatacggagtggacaattcttggtgtagaaggagaatctgagagagagagagtcatggaagctctgaaaaccgcaactttt  455900                                    --------->ANAC58                                    --------->ANAC46                                    --------->ANAC58                  <---------HSFB2a(2)       <---------DEAR4(1)      --------->ARR14(2)       <---------DEAR3(1)      <---------ARR14(2)       <---------DREB2C(2) <------ZmHOX2a(2)                                                        -      --------->DDF1  ---------->DOF2                                                            ----    <-----------RAV1(1)   <---------ARR11(3)                                                   ------ --------GT1      --------->HSFB2a(2) ---------->DOF2                                          ------ --DAG2<---------At1g77200--------->ARR11(3)<----------DOF2           --------->AtMYB61------>MYB83 < ---DOF2          --------->LBD16--------->MYB46(3)            <----------DOF2         ------>MYB46(1)   agccctatgtcggtgttatccgagaaaagatcagaaccacgaaagcctttctcgctccctaacctctttccaccaaaatcacagagaccaatctcccaag  456000                                                                                         <------ZmHOX2a(1)                                                                                     <---------TOE1(1)                                                                                     <---------TOE2(1)                                                                                  --------->TOE1(2)                                                                                  <---------SPL7                                                                                 <---------ANAC58                                                                                --------------->AtSPL3     --------->HSFB2a(2)                                           ------>ZmHOX2a(1)--------->SPL7     <---------HSFB2a(2)                                      --------->At4g35610<---------ANAC46 -------->HSFC1(2)        <---------WOX13(1)                  <---------At4g35610<---------ANAC58 ------>DOF2             <---------ARR14(2)                 --------->MYB46(3) <---------TGA2(2) --->ANAC58    <-------TEIL                               ==============================RAV---------- --->ANAC58   --------->GLK1(2)                           ----------->RAV1(1) ----------->HVH21 ---------HSFC1(2)       --------->ARR14(2)             <---------ZAT18     ----------->RAV1(2)    --   aaagcttcttgaagagattcaatggtggattggctcttctaacttctgttctaagcagtgcaacagctcctgctaaatccctgacgtacgaggaagctct  456100                                                                                           --------->LBD16                                                                                          <---------DREB2C(2)                                                     --------->GLK1(1)                    <---------DEAR3(1)                                              <XXXXXXXXXXXXXXXXXXXXMIR870                 <---------ATERF1(2)                                            <---------WOX13(1)                            --------->ATERF1(2)            <---------ALFIN1         <------MYB46(1)--------->ARR14(2)                   <---------ANAC46   --------->GLK1(2)                 <------MYB83   ---------->TaMYB80         <---------MYB52(1) --------->MYB46(3)                 <---------AtMYB61<---------GLK1(1)        <----------DOF2-------- ->ARR10----------->HVH21  <---------YAB1 --------->ATHB12                    ------>ZmHOX2a(1)     - --------->RAV1(1)      <----------DOF2  <---------YAB1         <-----------HVH21        <---------LBD16   gcaacaatctatgaccacttcttcatcttttgattcggatggtctgattgaagggatatccaattttgtcacagacaatcctttggttattgccggtgga  456200                                                                                                <----                                                                                                <----                                                                                                <----                                  --------->ARR14(2)                                            <----                                  <---------ARR14(2)           <---------At4g35610       ------------                                  --------->GLK1(2)            --------->At4g35610      <------------                                 <---------GLK1(2)     --------->ATHB12                 -------------                               <---------TOE1(2)       <---------ICU4   --------->At4g35610     <----                  <---------MYB52(1)        ---------->DOF2    <-------GAMYB<---------TOE2(3)  ------ ->ALFIN1  <---------MYB46(3)  <---------TOE2(2)       --------->YAB1   <---------At4g35610    <----- -------->At4g35610           <-----------RAV1(2)     <---------ATHB12--------->ZAT18   -------------   gttgctgcattggctgttccatttgttctgtctcaggttctgaacaagaagcccaaatcatggggagttgagtctgctaagaatgcttataccaagttgg  456300  Previous    Next  AGI:  At4g01040.1    Description:  glycosyl hydrolase family 18 protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO39742.1); contains InterPro domain Chitinase II; (InterPro:IPR011583); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 453369    to: 455548    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g01050.1    Description:  hydroxyproline-rich glycoprotein family protein. Identical to Uncharacterized protein At4g01050 [Arabidopsis Thaliana] (GB:Q9M158;GB:O04623;GB:Q93VZ2); similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G25480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39741.1); contains InterPro domain Rhodanese-like (InterPro:IPR001763) Range:  from: 455768    to: 458510    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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