Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                               ------                                                                                               ------                                                               <---------AHL20(2)              ------                                                               --------->AHL20(2)              ------                                                          <---------MYB52(1)                  <------                                                         --------->TOE1(3)                    -------                                                         --------->TOE2(3)                   --------                                                      -------->P ---------->DOF2             <-------                                                      ------>MYB83                           <-------        --------------->AGL15                         ------>MYB46(1)                       --------- --TEIL----------------->AGL2                       <---------MYB59                        --------->PCF2   agagacatcgccattaatggccttaacttaagagtcaaaaaaacatttgatgggcctacccttaattaaaagcccaattcgatattcgaatcgaacccac  445400                                                                                    --------->ABI4(1)                                                                                  --------->MYB46(3)                                                                                  --------->DEAR3(2)                                                                                  --------->ATERF1(1)   --------->MYB52(1)                                                            <---------At5g28300 <---------MYB59                                                                 <---------ATERF1(1) ------>ORA47(1)                                                              <-----------HVH21 ----->DEAR3(1)                                                               <-----------TGA1 ----->DREB2C(2)                                                             <---------bZIP60(1) ----->MYB46(3)                                                              --------->bZIP60(2) ---->DEAR3(2)                                                               --------->bZIP60(1) --->MYB52(1)              --------->ARR14(2)                                --------->O2 -->P                      <---------ARR11(3)                               --------->ATERF1(1) >MYB46(1)                 <---------ARR14(2)                               <------NtERF2 >MYB83<---------ZAT14     <---------ARR11(1)                              <---------ATERF1(1) ---ALFIN1                <---------CCA1(2)                               <---------ANAC58 -->MYB55(1)       <---------ZAT18                                   --------->REM1(2) ->MYB46(3)     <---------ANAC58                                    ----------->HVH21 --------->DEAR3(1) --ABI4(2)      <---------ANAC58                       <---------GLK1(2)  <---------ANAC58    <------ --MYB55(2)   --------->ZAT14              <----------DOF2         <-----------HVH21------>NtERF2   < >DEAR3(2)    <---------ZAT14 <----------DOF2   <<<<<<<<<TBF1   <---------At5g28300--------->DEAR3(1)   cggcctaactaaactgttcagtgtccccaaatctttttgcaacttctttcttcttcatattcttctcaccgtgaaggcgtcgtcaccgccgatgttatta  445500                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                           <-----------ARR10                                                           <---------ARR11(3)                                                      <-----------GT1                                                <-------GAMYB                           <----------DOF2     ----------->GT1  --------->LBD16          <---------DAG2      <------MYB46(1)  ------>NtERF2      <---------ICU4            <---------MYB46(3) <---------DEAR3(1) <---------YAB1             --------->MYB52(2)         <---------MYB52(1) ---YAB1          --------->YAB1               <------MYB83--------->ARR11(3)    <----------DOF2 <--- ---------LBD16   <---------ICU4             <--------P   <---------CCA1(2)  <----------DOF2 <-------   tctccggcgatgttttctgatcatcactgctttactcttactgcgaggttggttattttcaaatcttcttctctccgttctttctttcgaagtcagaaac  445600     <---------------AGL15     --------------->AGL15    ----------------->AGL3    <------NtERF2                                                               <---------MYB46(3)   ------>NtERF2                                                                ----------->GT1   <---------RAP2.6(3)                                                    <---------ANAC55(1)  --------->DEAR3(1)                                                      --------->ANAC55(2)  <---------ATERF1(2)                                                     <---------ANAC55(2)  --------->ANAC46                                                        <---------ANAC46  --------->RAP2.6(2)                                                     <---------ANAC58  --------->ATERF1(2)                                                <------MYB46(1) ---------->ID1              <-----------GT1                         <------MYB83 <---------RAP2.6(2)  <--------P                                    --------->MYB59  <---------YAB1 -------DOF2        ----------->GT1      --------->YAB1        <---------YAB1<------------CBF      -- --GLK1(2)      ---------->DOF2      --------->LBD16     <---------TOE2(3)<---------ANAC58        <--   tttgccgccattttcagtaaaagggttgattctacattccctagaatcatctaataactagggttttcattaggttacgtattggttaaaattagttgaa  445700                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                          --------->GLK1(1)                                         <---------AGP1                                         --------->AGP1                                         <---------ARR11(3)                                         --------->ARR11(3)                                         --------->ARR14(2)                                         <---------ARR14(2)                                        --------->At4g35610                                        <---------CCA1(2)                         <---------------AGL15                         --------------->AGL15                        ----------------->AGL2                        ----------------->AGL3                                              ---------                        <-----------------AG                                                <--------                        <-----------------AGL1                                           <---------ANAC55(2)                        <-----------------AGL2                                           <---------ANAC46                        <-----------------AGL3                                        --------->ARR14(2)           <-----------GT1      <------MYB83                   --------->YAB1         <---------ARR14(2) <---------YAB1    --------->HSFB2a(2)--------->YAB1    --------->ATHB12              --------->GLK1(2) ------->YAB1<-----------GT1    <------MYB46(1)        <---------YAB1             --------->YAB1 -------ATHB12  <----------DOF2--------->MYB59   <---------ANAC46           --------->YAB1--------->LBD16   atcatgtttcttatttctcttttcgaactaaatttggtaatcagatctctagagtgtatgatttgtcataacatctaatcgaaattagaatccgtatatg  445800                                                      <---------REM1(1)                                                    --------->At4g35610                                                    <---------At4g35610                                                   <---------YAB1             --------->GLK1(2)                                                --------->GLK1(2)             <-----------ARR10                                               <---------ARR14(2)            <---------GLK1(2)                       ----------->GT1         --------->ARR14(2)        <------ZmHOX2a(1)                     <---------ANAC58          <---------GLK1(2)    <---------DEAR3(1)                     <---------ANAC58         <---------At4g35610 <-----------HVH21 >ARR14(2)           <---------ANAC46     <-----------HVH21       --------->TOE1(2)             ----- -ARR14(2)        ------>ZmHOX2a(1)    <---------GLK1(2) ------->TEIL <------NtERF2             -----   tttcattcagagaataaatcctgacttgttaatttgatatagaatgtcagattctgatgaagctaaaacgtcggaggaagaatctcaacttgctgagcaa  445900                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              <---------ARR14(3)                                              --------->ARR14(3)                                              --------->ARR11(3)                                              <---------ARR11(3)              --------->MYB52(1)                                              <---------ARR14(2)        <-------TEIL--------->HSFB2a(1)                                              --------->ARR14(2)       --------->ARR14(1)                                              --------->AGP1           --------->CCA1(2)                                             <---------GLK1(1)        --------->ARR14(2)                                             --------->GLK1(1)        <---------ARR14(2)                                   ---------->DOF2                    --------->ARR11(1)  --------->LBD16 ---->ANAC58          --------->ICU4    ---------->DOF2             ----------->ARR10--------->At4g35610 ---->ANAC58   ----------->GT1  --------->TOE2(3)                   <---------YAB1---------->DOF2   -   gaaacagagactcaagaaggtgaaatgactaaaaacttaaagaaaagagatcttgatgcagtagaagatgaagattcgaataacgaaagctccagattag  446000                    ---------->DOF2                       --------->MYB52(1)             ----------->GT1                             ----------->HVH21  <---------YAB1            ----------->GT1                       <----------DOF2      <------ZmHOX2a(1) ----------------------->ANAC81   <------ZmHOX2a(1)    <---------At4g35610--------->YAB1 <---------MYB52(1)   agaaactagagaagaagataaaaaaagaaacagcgaggaagcttgaaactgactttgtgctaacaggggaagaggatgatgatgcattgcccttagcctg  446100                                        ------->GAMYB                                      --------->At4g35610                                      ------>MYB46(1)                                      ------>MYB83                                     --------->MYB55(1)                                     --------->MYB52(1)                                    --------->MYB46(3)                  ---------->DOF2                                 <-----------GT1                     <----------DOF2                              --------->bZIP60(1)                  <---------ZAT18                              <---------bZIP60(1)         ----------->RAV1(1)                           ------>ZmHOX2a(1)             ----------->HVH21                         ------>ZmHOX2a(2)      <---------MYB52(1) --------->ZAT18                        <------ZmHOX2a(2)     <---------ICU4       <---------ZAT14                       --------->ARR14(2)     --------->YAB1     --------->ZAT14        ------>ZmHOX2a(1)                       <---------ARR14(2)    <---------ATHB12    --------->ZAT18  <----------DOF2                       --------->ARR11(3)    --------->MYB46(3)  <---------ZAT18 <---------ICU4   ttccatttgccaaaacccattcttggatcctgttgtcaccaactgcaaccattacttctgcgacaagtgtgctctaaaggtaatcttttccttacaacaa  446200                                 <-----------GT1                              <---------GLK1(2)                              --------->ARR11(3)                              <---------ARR14(2) <---------ANAC46             --------->ARR14(2)                                              <------ <---------ANAC55(2)          <---------ARR11(3)                                         <---------ANAC58 <---------ANAC58     --------->YAB1               --------->YAB1                        <---------ANAC46 <---------ANAC58   --------->ANAC58         <---------AHL20(2)                          <---------ANAC58 ----------->GT1    --------->ANAC46<---------ANAC58                                   <---------ANAC46 --------->ANAC55(2)--------->ANAC58<---------ANAC58  ---------->DOF2           --------->ANAC55(2)   gtttcgtaatttctgaaaacacactcaaaacagattttccttgttattttttttcataatgcagcatcacactgagaacgatacttgttttgtgtgtaac  446300  Previous    Next  AGI:  At4g01023.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G06420.1); similar to zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G06420.2); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ65800.1); similar to Os02g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046620.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 445844    to: 446720    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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