Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ARR11(3)                                                                    --------->ARR11(3)         ------                                                                  <---------TOE1(3)        ----------      --------->TOE2(3)                                       <----------DOF2    <----------DOF2    <    <---------ARR11(3)                                 <---------AHL20(2)     <-----------GT1  <-----    --------->ARR11(3)                 --------->GLK1(2)     --------->TOE2(3)<---------AHL20(2)    - --------->AHL20(2)           <----------DOF2         --------->AHL20(2)   <---------ICU4  <--------- ----DOF2                  <-----------GT1      <-----------GT1   <---------TOE2(3)    <---------YAB1   gaataaaatctaaatggtatacaaatattaaactttacaagaatatgagttaactatttaatacctttaagatttcatatttacttttgatgatatgtac  438700         <---------ARR14(2)      <---------ANAC55(1)      <---------ANAC46          <-------TEIL      --------->ANAC55(2)      --------->CCA1(2)      <---------ANAC55(2)     <---------ARR14(2) ->TEIL  --------->ARR14(2)<--------P ----->AtSPL8       <---------YAB1 ---------AHL20(2) --------->ARR11(3)                                                              -- --TEIL  ------->TEIL--------->ATHB12                                     <---------AHL20(2)       <- -------->AHL20(2) <---------ARR11(3)        --------->TOE2(3)----------->GT1                      -- ------AtSPL8----------->GT1  --------->ARR14(2)       <---------AHL20(2)--------->AHL20(2)  --------   attttaatacgtatatggcaatatcattggtagatacactatttctaacttaaattttaaaatgtggtaaaaacataaaattgaaatactaagaaatgtt  438800                                                                 <------------CBF                                                            ---------->DOF2                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                          <---------YAB1                                                        <--------ATHB1                                                        --------->YAB1                                                        <--------HAHB4               ------>ZmHOX2a(1)                        --------->ATHB51       <----------DOF2        <---------HSFB2a(2)       <---------ICU4                         ------    --------->ZAT6            --------->HSFB2a(2)      <---------ATHB12                       -------  <-----------GT1            <---------LBD16           --------->AHL20(2)                     <------ ------->TOE1(3)          <---------GLK1(1)        --------->MYB46(3)                       <-------- ---------DOF2--------->TOE2(3)    --------->HSFC1(2)  <---------ATHB51                     <-------- ------->TOE2(3)          --------->GLK1(1)        ------------>CBF                       <---------YAB1 --->GT1      --------->TOE1(3)    <---------HSFC1(2)  --------->ICU4  ----------->GT1 --------->AHL20(2)   actttaacacttttatcctcaaatttggatttctggatgtttctataggtcgaaccaataattaaagaattgatagtaacaaaatgggttttaatattga  438900                                                      <---------AHL20(1)                          ---------->DOF2             --------->AHL20(1)                    ---------->DOF2                   <---------AHL20(2)                <------MYB46(1)                       --------->AHL20(2)        <---------WOX13(1)                <------MYB83                         --------->AHL20(2)        <------------CBF               <---------TOE2(3)                     <---------AHL20(2)    <---------ICU4          <---------AHL20(2)                     --------->AHL20(2)      <---------YAB1 --->ATHB12    --------->MYB59                 ----------->GT1        --------->AHL20(2) -->ICU4  --------->AHL20(1)                 --------->DAG2 <---------YAB1 <------------CBF ---YAB1  --------->AHL20(2)                ---------->DOF2--------->AHL20(2) --------->ATHB12 -ICU4   --------->AHL20(2)    ---------->DOF2----------->GT1     ----------->GT1      <-----------GT1 ----CBF <---------AHL20(2)--------->DAG2--------->ANAC46  <---------AHL20(2)<---------YAB1   -------   ttagaagaaaattaaattaggttaaagaaaaaggaaagagtagacgaaaagttaaataaattttaatagggttttaatattgattgatataactctctga  439000                                                                                             <-------                                                                                         --------->GLK1(1)                                                        --------->ANAC58               <------ZmHOX2a(1)                                                        ----------->GT1          --------->YAB1                                                        --------->ANAC58         <---------ICU4    --     ----------->HVH21            <----------DOF2--------->TOE2(3)              --------->ICU4     == ---->HVH21<----------DOF2  <----------DOF2      --------->YAB1       --------->bZIP60(1)<---------GLK1(1)   ctcttctgtgactcttttcaacttctgactctttctctttcgctctctcattcttaacaagaaaaaaaactggcatcatctcatcatgaggaactctttt  439100                  <------ZmHOX2a(2)                 <---------ARR14(2)                 --------->ARR14(2)   <---------ZAT2                    <-----------GT1            <---------MYB46(3)     --------->TGA2(2)                <---------MYB52(1)            --------->MYB55(2)    <-----------TGA1                ----------->GT1                 <--           --------->ALFIN1       <-----------HVH21             ------->TEIL                      ---  ===================================HOX2a_HOX2a               --------->MYB52(1)                 ---  <-----------HVH21           ==================================HOX2a_HOX2a                      ----  =======================HOX2a_HOX2a  <---------At4g35610     ------->GAMYB                      ----  ------>ZmHOX2a(1)    ------>NtERF2  --------->ZAT2         --------->MYB46(3)                 <---- ---DOF2<---------DEAR3(1)    ------>ZmHOX2a(2)              <---------MYB52(2)     <---------ZAT14 - ---->ZmHOX2a(1)--------->GLK1(1)--------->ETT(2)       --------->TOE2(3)           --------->ZAT14 - ========================HOX2a_HOX2a  --------->At4g35610------>ZmHOX2a(1)          <---------ZAT18--   cctccttcagacggtgggagatcgacgactgatcgtcgtcagcagtcgtttccctcatcctcaacgaaccgttataactctcgctctgcacaatcttctc  439200            --------->ZAT14        <---------ALFIN1       <---------MYB55(2)       --------->MYB46(3) <---------At4g35610                                          >>>>>>>>>E2Fc --------->At4g35610                                          >>>>>>>>>E2Fd ------>NtERF2                                               ------>NtERF2--------->TGA1a         --- -------ATERF1(1)                                           --------->ANAC46                <------NtERF2 --->NtERF2 <---------ZAT18                                 --------->ANAC58    ===================== ------>LBD16                         --------------->AtSPL8--------->ANAC58    ------>ZmHOX2a(2)---- ----->ANAC46                   <---------ALFIN1            <<<<<<<<<<E2Fa<---------TGA1a  <---------SPL7 ----->DEAR3(1)               ----------->RAV1(1)          <---------LBD16--------->O2    <---------DEAR3(1) -----LBD16 <---------ZAT14--------->ANAC58             <-----------GT1   <---------O2  <-----------HVH21 -------->RAP2.3(2)        --------->ANAC46      --------->ZAT6           --------->ANAC55(2)    <--- -------->DEAR3(1)         --------->ANAC58 --------->TOE2(3)--------->LBD16----------->HVH21    <--- ------->RAP2.3(1)       --------->MYB46(3) --------->YAB1>>>>>>>>>>E2Fb  <---------ANAC55(2)  <-----   cgccgctcaaccactgtactacttggaaccagcaacactctcagtaccataacactaatttcccgccaaattacagacgtgatcgtgctccgtcgtcggg  439300                                                               ----------->HVH21                                                              <---------MYB52(2)                                                             --------->At4g35610                                                            --------->DEAR3(1)                                                            --------->RAP2.3(2)                                                            --------->RAP2.6(2)                                                            --------->RRTF1(3)                                                           --------->RRTF1(1)                                                           <------NtERF2                                                           --------->ATERF1(1)                                                           --------->RAP2.3(1)                                                          --------->ABI4(1)                                                          <---------ATERF1(1)                                                          <---------RAP2.3(1)                                                          ------>NtERF2                                                         --------->RAP2.3(2)                                                         --------->ANAC46                                                         --------->RAP2.6(2)                                                         <---------ATERF1(2)                                                         --------->RAP2.3(3)                                                         <---------DEAR3(1)                                                         --------->RRTF1(3)                                                         --------->DEAR3(1)                                                         --------->ATERF1(2)                                                         --------->RRTF1(2)                                                         <---------ALFIN1                                                        --------->ATERF1(1)                                                        --------->ORA47(2)                                                        <------NtERF2                                                        --------->RAP2.6(1)                                                        --------->RRTF1(1)                                                        --------->ERF1                                                       --------->ABI4(1)                                                       ------>NtERF2                                                       --------->LBD16                                                      --------->DEAR3(1)              <---------O2                            <---------ALFIN1              --------->TGA1a                         --------->ANAC46              <---------TGA1a                      --------->ANAC46           ----------->HVH21                     <---------ALFIN1    ----------->HVH21      ------>ZmHOX2a(1)                        <-----------HVH21  --------->ZAT6 ------>GLK1(2)   ------>NtERF2              --------->At4g35610--------->MYB52(1)       --------->ANAC58 ============HOX2a_HOX2a                  --------->At4g35610------>NtERF2    --------->ZAT2 ----->ARR14(2)  --------->LBD16          <---------At4g35610<---------At4g35610         --------->ANAC58 ------GLK1(2)--------->O2<---------MYB59 <---------ZAT2--------->DEAR4(2)    --------->At4g35610 ------ARR14(2)<---------LBD16            --------->ZAT2--------->RAP2.3(1)   <---------At4g35610 -NtERF2  <-----------HVH21           <-----------HVH21<---------ATERF1(1) ---------->DOF2        <--   attctctcctccagtcacgcgggctaggcctaatttcatcgttcagctgcttcaccccgccgccgctaacagtgacacaaagctgtctaagaagcaagag  439400                                             ------->MYC2                                             <-------PIF5                                             ------->PIF5                                             <-------MYC2                                             ------->MYC4                                             <-------MYC4                                             ------->MYC3                                             <-------PIF4                                             ------->PIF4                                             <-------MYC3                                            --------->ANAC55(2)                                            <---------ANAC55(2)                                            <---------ANAC58                                            <---------TGA1a                                         <                             --------->LBD16--------->O2                                            <                            <---------ANAC46--------->TGA1a                                         <                            --------->HSFB2a(2)          <------MYB83                          <-----                            <---------HSFB2a(2)------->TEIL                                    <-----                         <---------ARR14(2) <---------ANAC58                                <------MYB46(1)                         --------->GLK1(2)  ======================MYC_MYB                   <------MYB83                <----------DOF2          --------->ZAT14 <------MYB46(1)                   <---------MYB46(3)                ======================================bZIP_DOF                             --------->MYB55(2)               <---------ANAC58        --------->At4g35610<-------GAMYB              <-----------TGA1           <----------DOF2 <---------LBD16  <---------O2--------->MYB59 --------->ANAC58  --------->ALFIN1           ===========================================bZIP_DOF          --------->ANAC58--------->MYB52(2) ----ZmHOX2a(2)<---------ANAC58  <------ZmHOX2a(1)    --------------------->WRI1     <-----------HVH21   atcgagagtatcgctttgctttgcgaaattccggaggaatcagttcacgtgcctcaatttggttgtatcgctgcaagcttcagttttcgtcagtgggtcg  439500                                                                         ------>ZmHOX2a(1)            <---------MYB52(1)                                  <---------ZAT2           <---------RAP2.6(3)                                  --------->At4g35610           <------           <-------GAMYB                                     ------>ZmHOX2a(1)         <---------ANAC58 ---------ANAC58                                             --------->LBD16<-----------RAV1(1) ---------ANAC46     <----------DOF2                       ----------->RAV1(2)         <---------ANAC46 ---------ANAC58     --------------------->WRI1  <---------YAB1 --------->ZAT2         <---------ANAC55(1) ----DEAR3(1)      <----------DOF2               --------->ICU4 <---------At4g35610    <---------ANAC58 ----MYB46(3)<-----------RAV1(1)     <---------REM1(2)     =============================RAV----------   atgcgcgttctgccgttgtggctctttgggattatcgtcttcaagggagacatgattttgttcctgagctgattcctaatgttgttgttccgtctgacat  439600  Previous    Next  AGI:  At4g01020.1    Description:  helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. similar to helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G10370.1); similar to hypothetical protein OsI_025976 [Oryza sativa (indica cultivar-group)] (GB:EAZ04744.1); similar to hypothetical protein OsJ_024178 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40695.1); similar to 117M18_19 [Brassica rapa] (GB:AAZ66938.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPr Range:  from: 439086    to: 445168    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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