Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <---------------------WRI1                                       ------->MYC2                                       --------->TOE1(2)                                       ------->MYC3                          --------->ANAC58      <---------ZAT18       <-----------GT1                          --------->ANAC58      --------->ZAT18    --------->ANAC46                        ---------->DOF2<-------MYC2   --------->At4g35610                   <---------ANAC46    --------->TOE2(2) --------->At4g35610             >>>>>>>>>SUP                   <---------REM1(1)   <-------MYC3   <---------At4g35610  --------->AtLEC2   <------   aactgaaacacaatgtgaatgatgtagaaagcatctataaacgtgcgaagcacactagctgctatctccaagttacgatgcaaattaagacagtgtcttt  436800                                                                                                <----                                                                                                <----                                                                                               ------                                                                                              <------ZmHOX2a(2)                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                       --------->ANAC58            --------->HSFB2a(2)                                                --------->MYB46(3)                 <---------HSFB2a(2)                                                <---------ATHB12                   ----------->GT1                                              --------->WOX13(1)                --------->ARR14(2)                                           --------->ANAC58         <---------ARR11(3)       <-------                  ----------->GT1          --------->ANAC58         --------->ARR11(3)      ---------            <------ZmHOX2a(1)            ---------->DOF2    ---------->DOF2     <---------ARR14(2)            ===========================HOX2a_HOX2a     --------->ANAC58     ----------------->AGL1  < ----DOF2 --------->YAB1        <------ZmHOX2a(2)    ---------->DOF2<---------GLK1(2)    ---------->DOF2   ctccatcaacaataggaatatagaaaaacaatggatcaatagccaaagcaatcactgaagcaaaaagaaagattttgttccagttctgtaaaaaagatcc  436900                                <---------HSFB2a(2)                                <---------------AGL15                                --------->HSFB2a(2)                                --------------->AGL15        <---------YAB1         ----------------->AGL3                                              -- -----ANAC58                   <-----------------AGL3                                             --- -----ANAC58              --------------->AtSPL3                                                  --- >ZmHOX2a(2)              <---------------AtSPL8                                                  <-- ->ARR14(2)               <---------ZAT6                                                          <-- --ARR14(2)           <---------ZAT14                     <---------ANAC55(2)                     <-- --GLK1(2)<---------AHL20(2)   =====================================MADS_MADS                     --- ->ARR11(3)           --------->REM1(2)             <---------YAB1         <---------TOE2(3)     ---- --ARR11(3)           --------->ZAT14     --------->GLK1(2)           --------->TOE2(3)   ------>ZmHOX2a(1) >RVE1(1)--------->YAB1 <---------ANAC46 <---------GLK1(2)<---------ANAC46 <---------TOE1(3)     <--- ---------ANAC46   <---------ANAC46   --------->YAB1--------------->AGL15---------->DOF2--------->ZAT18   ttgtgggtttataatattcttctgtgtagtggtactagaattagaatctctcttcttattatgtgaaccaaaacttaaaggtttcttaagtcctctacga  437000                                            --------->LBD16 ------->KAN4(2)                           --------->HSFB2a(2) ------>HSFB2a(1)                          <---------HSFB2a(2) ------>KAN4(1)                            <---------ANAC55(2) -------HSFB2a(1)                          <---------ANAC58                         --------->TOE1(3) -------KAN4(1)                            <---------ANAC58                         --------->TOE2(3) -------HSFC1(2)                           --------->ANAC46                         <---------MYB59 ------>HSFC1(2)                           --------->ANAC55(2)                    ------->TEIL --->TEIL                       <---------DAG2                      --------->GLK1(1) ------KAN4(2)                  <----------DOF2  --------->YAB1     <---------GLK1(1)            ----   acattcttcaaaactgtgtttagagatggtctagctttatttcttccgtaaccatactctgttccctctgaaatccaatctctgaacctaaacaaaaaat  437100                                                                                                 ----                 <---------AHL20(2)    --------->TOE2(3)                                         ----              --------->ARR11(3)    <---------ARR14(2)                                       --------              --------->AHL20(1)    --------->ARR14(2)                                       --------              <---------ARR11(3)   <---------CCA1(2)                                    <---------TOE2(3)       ---------->DOF2     --------->GLK1(2)                                           ---------->DOF2 ----->YAB1   <---------AHL20(1) --------->YAB1          <-------TEIL     ---------->DOF2  ----------   catcaacaaaaaagaatattttttctgagaatcattcatatccatagtttctcagtaaattcattctaaaaaaaaaaaaagacagagattaaagaaagca  437200                                 --------->ANAC58                                 --------->ANAC58                    ------>ZmHOX2a(1)       ------->GAMYB     <---------ANAC46                            ================================HOX2a_HOX2a      --------->MYB46(3) <---------RAP2.6(2)                       ------>ZmHOX2a(2) --------->ANAC58        <---------ANAC58                         <------ZmHOX2a(2) --------->ANAC58   <---------MYB46(3)                           --------->ARR14(2) ----->ANAC58       <-----------RAV1(1)                          <---------ARR14(2) ----->ANAC58       --------->MYB52(2)                      --------->MYB52(1) ->ANAC58 --------->TOE1(3)    ---------->DOF2           <----------DOF2  --------->YAB1 ->ANAC58 --------->TOE2(3)------>NtERF2        <----------DOF2  --------->ARR11(3)              <--- >DOF2<---------MYB111(2)<---------ANAC58 --------->WRKY18(1)    <---------GLK1(2)            ------>ZmHOX2a(2)   agcaaacaacaaccttacacgattgttgcggccaaaagccatgagtcaagctttttttgctataacggatcctgaatcataagaacatcgatttgatcgc  437300                                                            --------->ANAC58               --------->LBD16                                                            --------->ANAC58              --------->ANAC46                                                          --------->MYB52(1)           <---------ARR14(2)                                                         <---------ARR14(2)            --------->ARR14(2)                                                      >>>>>>>>>TBF1                   <---------CCA1(2)           --------->ANAC46                        >>>>>>>>>TBF1                    --------->AHL20(2)      <---------MYB52(1) --------->MYB52(1)     >>>>>>>>>TBF1----------->GT1        <---------AHL20(2) -------DOF2         --------->ZAT6      ---------->DOF2 --------->ARR14(2)--------->AHL20(2)  <-----   tttaattcgttatccccaagtttacagtaacagaaaaaaaaaaaaaagaagaagaagaagaaacggaaactaagaaattaaaacatttatatccgaaact  437400                                                                              --------->KAN4(2)                                                                             --------->HSFC1(2)                                                                             <---------HSFC1(2)                                                                     <------------CBF                                                                ------>ZmHOX2a(2)                                                                <-----------------AGL3   --------->AHL20(2)                                                               --------->At4g35610<---------HSFC1(1)                                                              <---------ARR11(3)  <---------HSFB2a(2)                                                    --------->HSFB2a(1)      --------->HSFB2a(1)                                                    <---------HSFB2a(1)     ----------->ARR10                                                    --------->HSFC1(2)   ----------->GT1 <---------AHL20(2)                                            --------->YAB1    --------->ARR11(3)  --------->HSFB2a(2)                             --------->CCA1(2)      <---------HSFC1(2)  ----------->GT1 --------->AHL20(2) ----MYB52(2) --------->MYB52(1)        <---------YAB1    <---------At4g35610<---------HSFB2a(1)   gaccagaacgttgaagtaactgagagaagcgatataagaaagattatagtaagaattttccgatgatctgaaattgggaaaattctcgaaattaattctc  437500                                                          <------NtERF2                                                   <---------ANAC58                                                   <---------ANAC58                                                   <---------AtLEC2                                              <---------ANAC58                                       <---------ZAT6   <---------DEAR3(1)                        <--                              <---------YAB1  <---------ANAC58                 ------------>AtMYB77                         --------->ANAC58    <---------ZAT2                 --------------------->WRI1                         --------->ANAC58--------->WRKY18(1)             <<<<<<<<<<<<<<<<<LFY     <--                ----------->GT1--------->YAB1--------->ZAT2              >>>>>>>>>>>>>>>>>LFY     <--   tgaagtttttttttgaagcagtcaaataagctatcatcgtagagtcaagcttggcatggcgctggaaaatggagactccattggcagtttcttcgaaatt  437600                                          ----------->GT1                                      ---------->DOF2                                  <---------ICU4                            ---------->DOF2             --------->AHL20(2)   --------->ATHB51                        --------->AHL20(2)       <-----------GT1            -------->ATHB1                          <---------AHL20(2) -------ANAC58       ---------->DOF2<---------YAB1                  --------->TOE1(3) -------ANAC58  <----------ID1    <--------HAHB4                    --------->TOE2(3) -------ANAC46---------->DOF2    --------->ICU4                <---------MYB59                <------   gtgtgcattttacaataaaagacaaaagagagggaattattaaagagtcaaaaacatttgatgggcctaaccttaattaaaagcccaattcgatattgaa  437700  Previous    Next  AGI:  At4g01010.1    Description:  ATCNGC13 (cyclic nucleotide gated channel 13); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Putative cyclic nucleotide-gated ion channel 13 (CNGC13) [Arabidopsis Thaliana] (GB:Q9LD40); similar to ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G01340.1); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) [Arabidopsis thaliana] (TAIR:AT2G46430.2); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to cyc Range:  from: 434569    to: 437242    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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