Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             --------->ARR14(2)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                      <-----------HVH21                                                              --------->bZIP60(1)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <---------bZIP60(1)                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                      <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <---------YAB1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxx                        --------->ICU4          --------->MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      --------->YAB1  ----------->HVH21   <---------ARR11(3) <---------ARR14(2)           --------->ICU4     ---------->DOF2 <---------MYB52(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->At4g35610   --------->ANAC55(2)  <xxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------At4g35610   <---------ANAC55(2)  <xxxxxxxxxxxx   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ZAT14 ---------YAB1   ----------->GT1    --------->At4g35610   --------->ARR11(3)--------->GLK1(1)  <----- ------>YAB1    --------->MYB59     <---------At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(s)--------->ZAT14   tcatatttgagacataatcaggtataatgaataaaagcagatgacacagcaaacgaggaagatgtcatcacttgtcacaaatccagtgcatagatggatc  273900           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <----         <---------At4g35610                                                                    -----         --------->At4g35610                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------YAB1                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->GLK1(2)                                       ----------->HVH21       --------->ARR11(3)     --------->ICU4                                  --------->ARR14(2)              <---------ARR11(3) <---------ZAT18                                     <---------ARR14(2)    <---------ANAC46     <---- --------->ZAT18                                     <---------GLK1(2)  <---------AtMYB61       <---- xxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(si3)               xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxsmallRNA(fl3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ALFIN1        <---- xxxxxx>smallRNA(si3)    --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------GT1---- -ZmHOX2a(2)  ----------->GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------RAV1(2)    <---------AtLEC2   aagtgcaattctgatgaagtataaaaacattagagaaatactctgaaattggatggatactctatgacgaccaggtggtgtttgtaacatcttgcatagc  274000                                                                            ----------->GT1        --------->At4g35610                                                <---------TOE1(3)        <---------At4g35610            <---------ARR11(3)                  <---------TOE2(3) -----ANAC58                           --------->ARR11(3)               <<<<<<<<<MYB98 ------>GT1                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------TOE2(3) -----ZAT6<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->AHL20(2)           -------- -----ANAC46                   ---------->DOF2                  <---------AHL20(2)          --------- xxsmallRNA(si3)           --------->At4g35610                <----------DOF2--------->At5g28300 -----ANAC58               <---------At4g35610  <-----------HVH21   <---------AHL20(2)    <------ZmHOX2a(1) ----->TOE2(3)      <----------DOF2    <---------GLK1(2)      --------->TOE2(3)     <---------ANAC55(2)   gttaatcttgagctaaaaacagctttagaagctgaaagatagatttttggggtcagactgaaaactttaattaagttagggtaaatatgtaaggaaaagg  274100                                                                                                    <                                                                                                <----                                                                                               <-----                --------->AHL20(2)                                  --------->ANAC58           ------                <---------AHL20(2)                                  --------->ANAC58         <-------            <---------AHL20(2)                           <---------AHL20(2)         ------------>CBF-     ----------->GT1                                     <---------YAB1          --------->ANAC58----   <---------ANAC46      ---------->DOF2                 --------->AHL20(2)--------->ANAC58  -------- ->DAG2    <---------AHL20(2)             --------->TOE2(3)  <-----------GT1     --------->ANAC58---- ->DOF2    --------->AHL20(2)---------->DOF2            --------->AHL20(2) --------->ANAC58 <--------   aagtaatgtgtaattttataaatttcagaaagaaagaaatgaaaacttaaaactccgttttaattaccacaaggctcaagcccaagcccaataccgctaa  274200       --------->ANAC58       --------->ANAC58    --------->TOE1(2) --------->ARR14(2)                                                               <---------GLK1(1) <---------ARR14(2)       <---------AHL20(2)                               --------->TGA1a ---------GLK1(1)        --------->YAB1                                    <---------O2 -----TOE2(3)           <---------YAB1                                     ========================== ----DOF5.7(2)         <---------AHL20(2)                                  --------->O2 --->MYB52(1)          --------->AHL20(1)                                  --------->ANAC58 --MYB52(2)            --------->AHL20(2)       <----------DOF2            --------->ANAC46 -------->GLK1(1)     --------->YAB1            =====================================bZIP_DOF ----->ANAC58        <---------YAB1         <---------ICU4                 --------->ANAC58 ->DOF5.7(2)        --------->TOE2(3)       --------->YAB1                 <---------TGA1a    ------- ----->ANAC58      <---------ICU4      --------->ARR11(3)               ----------->HVH21<---------ANAC58 -At4g35610        --------->YAB1    <---------ZAT6      *TSS        <-----------HVH21   <---------ANAC58   cgaaatccgacgaaatcacaaacattataatattacatagagataatcatctttctgtctctctgtctctctgtctcacgcgagaactctggcttcgtct  274300                                                     <----------DOF2                                                     <---------DAG2                                                --------->WRKY38(1)                                                --------->WRKY12                   ==============================HOX2a_HOX2a            <----------DOF2                    --------->ALFIN1       <-----------GT1                       <---------O2                            <----------DOF2   --------->ATHB12------>ZmHOX2a(2)         <---------ANAC58                <---------GLK1(2)  <---------AHL20(2)                         <---------ANAC46              --------->LBD16  <---------YAB1 --------->ARR11(3)          <---------ANAC58             --------->HSFB2a(2) ======================bZIP_DOF           ------>ZmHOX2a(1)               <---------HSFB2a(2) --->ID1   <---------DAG2         <----------DOF2 ------->TEIL       --------->WOX13(1)   ctatattattgacccttttgatctctctctgtctcgctttcttcctcgcgtggacctttttcgaaaaatatcaatcccagaatttcgcttcattttggat  274400            ------>ZmHOX2a(2)           --------->CCA1(2)           <------ZmHOX2a(2)          --------->ARR11(3)          <---------AGP1          --------->ARR14(2)          <---------ARR14(2)          <---------ARR11(3)                                        ----------->GT1          --------->ARR14(3)                                   --------->LBD16          --------->AGP1                                      <---------HSFB2a(2)                   <          <---------ARR14(3)                                  --------->ANAC46                      <         <---------CCA1(2)                                    --------->HSFB2a(2)                  --       <---------HSFB2a(2)                              <---------GLK1(1)      <-----------GT1     <-       --------->HSFB2a(2)                 <-----------GT1   <---------LBD16<---------AHL20(2)     <-   tataaactcccagatctgctactctctatctccgattttgtgatttttcaaaccctagatttctccggaagagtttatttttttctctgtaactaaaccg  274500                                                                                             --------                                                                                       ------>ZmHOX2a(2)                                                                                       ==============HOX2a_HOX2a                                                                                      ===============HOX2a_HOX2a                                            --------->LBD16                           <------ZmHOX2a(2)       <-----------GT1                   <---------At5g28300                         <---------ARR14(2)  <---------AHL20(2)                    <-----------GT1                              <---------ARR11(3) ---------RVE1(1)                  <---------ANAC46                                  --------->ARR11(3) ---------CCA1(1)            <---------TOE2(2)                <---------DAG2        <---------At4g35610 ------->ARR11(3)           --------->STY1(1)                 <----------DOF2  <---------ZAT14 --------ARR11(3)           <---------STY1(1)        --------->TOE2(3)         --------->ZAT14------>ZmHOX2a(1) --------GLK1(2) <---------ETT(1) <-----------------------TaNAC69(2)   <---------YAB1--------->ARR14(2)   agatttttttttcaaaattccgacattaccctaggttgtgtattaccgtagaaaaccctagttcctttttggtattcttggtgtacagatcccttcctta  274600                                                            <---------HSFB2a(2)                                                            ------>ZmHOX2a(1)                                                            --------->HSFB2a(2)                                                            --------->LBD16                                                  <---------HSFB2a(1)                                                  --------->HSFB2a(1)          --------->REM1(2)                                                  <------MYB46(1)           <---------ANAC58                                                  <------MYB83              <---------ANAC46                                                  <---------HSFC1(2)        <---------ANAC58                                                  --------->HSFC1(2)  --------->At4g35610        ----                                                 --------->MYB59      <---------At4g35610        ----                                                 <---------------AtSPL8  ------>NtERF2     --------->TOE1(3)                                                 --------------->AtSPL8--------->ATERF1(1) --------->TOE2(3)                         <---------TOE2(3)       --------------->AtSPL3<------NtERF2 <----------DOF2<                  <---------ZAT6               <------ZmHOX2a(1)     <---------DEAR3(1)   --------->ZAT6 ->TOE2(3)    <---------YAB1           --------->MYB46(3) ----------->RAV1(2) --------->ALFIN1  -----   gtcagagtttttggttattagtgtttagaggtttgtgatgaacaatcgaggaaggtaccctcctggaattggcgctggccgtggagcctttaaccctaac  274700                                        --------->RAP2.3(3)                                       <------NtERF2                                      <---------ATERF1(1)                                      --------->ABI4(1)                                      ------>NtERF2                                     --------->RAP2.3(2)                                     --------->RAP2.6(2)                                     --------->DEAR3(1)                                     <---------ALFIN1                                     --------->RRTF1(3)                                     <---------ATERF1(1)                                     <---------ATERF1(2)                                     --------->ATERF1(2)                                     --------->RRTF1(2)                                     --------->RAP2.3(3)                                    --------->DEAR4(2)                                    --------->RRTF1(1)                                    --------->RAP2.3(1)                                             -           <---------At5g28300      --------->ATERF1(1)                                             -         <---------ATHB12           --------->ORA47(2)                                              -        ------>MYB83                --------->ERF1                                                 --        ------>MYB46(1)            <---------ATERF1(1)                                             --       --------->WOX13(1)          --------->LBD16                                                 <-     ----------------->AGL1        --------->At4g35610      >>>>>>>>>GT-2                    --------   <-----------GT1                 ------>NtERF2          --------->At5g28300     ----------->RAV1(1) ----->TOE2(3)                    --------->ANAC46       ----------->GT1         --------->MYB46(3)-- ----->TOE1(3)                    ------->GAMYB    <---------WRKY38(1)          ------>MYB83 -------- ---------ICU4<-----------HVH21  --------->MYB46(3)<---------WRKY12             ------>MYB46(1)  ---- ---->ZAT6--------->YAB1       --------->ARR14(2) <-------TEIL <-----------GT1 ----------->RAV1(1) --   cctaattaccaatcacggtcgggttatcaacaacatccgccgccccaatacgttcaacgcggtaattacgctcagaatcaccaacaacagtttcaacaag  274800  Previous    Next  AGI:  At4g00660.1    Description:  DEAD/DEAH box helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 8 (RH8) [Arabidopsis Thaliana] (GB:Q8RXK6;GB:O65275;GB:Q9ZS12); similar to DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana] (TAIR:AT3G61240.2); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT2G45810.1); similar to DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana] (TAIR:AT3G61240.1); similar to DEAD-box ATP-dependent RNA helicase 8 (GB:Q6H7S2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62784.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75439.1); contains InterPro domain RNA h Range:  from: 274257    to: 278737    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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