Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->AtMYB61                                   <---------ALFIN1                                 <-----------HVH21                                --------->AtMYB61                                                 ---                             --------->ANAC58                                                  ------                             --------->ANAC58           <---------ZAT6                         ------     <---------ANAC58        --------->ANAC46        <--------P                                <-----     <---------ANAC58       --------->ZAT18      <-----------RAV1(2)                          -------     <---------ANAC46     --------->ZAT14       <---------ZAT18               <-------TEIL   -------- --->TOE1(2)              --------->ZAT18       --------->ZAT14       <----------DOF2        -------- -->YAB1                  <---------ZAT18       <---------ZAT14  --------->At5g28300 <---------At5g28300 --YAB1              ---------->DOF2        <---------ICU4      ----------->GT1     <-----------GT1 <   gggattatcgtgtttgaagactaaaaagagcacaccatcacccccattagtgcaggtagagtaagacagtaacttttgggttcatattaccgagcaagaa  268600                                                                        --------->YAB1                                                                        <---------ICU4                                                                       <---------ATHB12                                                                       --------->ICU4       <---------YAB1                                        --------->ANAC55(2)  --------->MYB52(2)                                         <---------ANAC55(2)  ------>MYB83 -------->GT1                                              <-----------GT1        --------->MYB52(1) ------>MYB.PH3(1)                                     <---------ARR11(3)       <---------MYB111(1) --->ARR14(2)                                          --------->ARR11(3)       <---------MYB59 ----ARR14(2)              --------->AtMYB61           <---------AHL20(1)       <---------MYB46(2)  - -->MYB46(3)              --------->MYB46(3)           --------->AHL20(2) --------->AtLEC2       ---- ->ANAC58               --------->ANAC46               <---------AHL20(2) --------->ANAC58    ------- ->ANAC58        ----------->GT1 <----------DOF2       --------->AHL20(1) --------->ANAC58  <-------- ---------MYB52(1)      <-----------GT1       <---------AHL20(2)  <---------ANAC46------>MYB46(1)----   ccgttatttgtgattagacatgttataaaccactgctttagtgactatttaaaacaatatattacatgtcgtaatcatgcaacctaactatgttttcatt  268700                                       <--------HAHB4                                       <---------ICU4                                       ---------                                       --------->AHL20(2)                                  <---------YAB1                                       <---------AHL20(2)                                <---------ICU4                                       -------->ATHB1                                    -------->ATHB1                                       --------->ATHB12                                 --------->AHL20(2)                                       --------->ATHB51                                 <---------AHL20(2)                                  ------------>CBF                                      <---------ATHB51                                  <-------TEIL                                       <---------AHL20(1)                           <---------ANAC46                                          --------->AHL20(2)                           <---------ANAC58                                          --------->AHL20(1) -------->AHL20(2)         <---------ANAC58                                          <---------AHL20(2) ----->YAB1               <-------TEIL<---------ATHB12                <---------CCA1(2) --------->ICU4 -->TOE2(3)           --------->DAG2  <---------ATHB51            ----------->TBP   <---------AHL20(2) -YAB1        ---------->DOF2 ----------->ARR10               ----------->GT1       --------->AHL20(2) ----->WOX13(1)      ---------->DOF2  --------->ICU4    ---------->DOF2       <----------DOF2   aatcaaatacaaagaataaagagaaaagtgcgtagattcaattatttggcatagactcaaaagagtgtatatatatctgacttttattaaattattaaac  268800                                                        ---------->DOF2                --------->ANAC58                     --------->TOE2(3)                     <------MYB46(1)                --------->ANAC46                     --------->TOE1(3)                     ----------            --------->YAB1                          ----------------->AGL1                 <------MYB83    <---------ANAC55(2)     ---------->DOF2    <---------ICU4                       ---------->DOF2    --------->ANAC55(2)   <---------YAB1      <---------YAB1                      <---------AHL20(2)   <-------TEIL --------->ANAC58              --------->ICU4    --------->DAG2    --------->AHL20(2) >AHL20(2) <---------YAB1 ----------->TBP   <-----------GT1    ---------->DOF2------>ZmHOX2a(1)     <   acaaatacatattttcataagcaaaactataaaagccctaaacatataacgattacctcaaaggaaaaagtcgttttctcctaattaaaagataggttac  268900                                                               -------->ZAP1                                                             <-----------GT1                                                             <---------WRKY18(1)            --------->AHL20(2)                       ----------->GT1            <---------AHL20(2)                       <------MYB46(1)         <---------AHL20(1)                          <------MYB83         --------->AHL20(1)                    <---------AHL20(2)     <---------AHL20(2)                       <---------AHL20(1)         <------ZmHOX2a(1)     --------->AHL20(2)                       <---------AHL20(2)       <---------TOE2(3)    --------->AHL20(2)                        --------->AHL20(2)       <---------TOE1(3) ------>ZmHOX2a(1)                       ------------>CBF   --------->WRKY12                <-------- ->GT1--------->AHL20(2)     ------------>CBF --------->YAB1----------->HVH21  ----------->GT1 ------ ---------MYB59 <---------AHL20(2) <-----------GT1  --------->MYB59<----------DOF2          ---------   ttcctaattaatatataatttatgtgaacttcacaatatacagttcaataaaatttggtaatttgaccgatttaaggagagtggaaattagggcttctgc  269000                                                      --------->ANAC58                                                      -------->P                                                      --------->ANAC58                                                    <------NtERF2                                                  --------->ANAC58                                                  --------->ANAC58                                                  --------->RAP2.3(2)                                                 --------->ATERF1(1)                                                 <---------------------WRI1                                                 <------NtERF2                                                 --------->RAP2.3(1)                                                 --------->RRTF1(1)                                                <---------DEAR4(2)                                                <---------RRTF1(1)                                                <---------ERF1                                                <---------ORA47(2)                                                <---------RAP2.3(1)                                                <---------RAP2.6(1)                                                <---------ATERF1(1)                                                ------>NtERF2                                               <---------ANAC58                                               <---------ANAC58                                               <---------ANAC46                                               <---------RAP2.3(3)                                               <---------RRTF1(3)                                               <---------ATERF1(2)                                               <---------DEAR3(1)                                               --------->ATERF1(2)                                               <---------RAP2.6(2)                                               <---------RRTF1(2)                                               <---------DREB2C(2)                                              --------->ATERF1(1)                                              <---------ABI4(1)                                             <---------ATERF1(1)                                             --------->ABI4(2)                                             ------>NtERF2                                             <---------ERF1                                             <---------MYB46(3)                                            --------->ALFIN1                                            <---------DEAR3(1)                                          <---------DEAR3(2)                            --------->REM1(1)              ------>NtERF2              <---------DEAR3(1)                           ----------->RAV1(1)              <------NtERF2            --------->MYB52(1)                           --------->At4g35610              ------------>CBF        ------->GAMYB------>NtERF2              <---------ZAT2              --------->LBD16         --------->DEAR3(1)                      --------->At4g35610             --------->RAP2.3(2)      ----------->HVH21                       <---------At4g35610             --------->DEAR3(1)       --------->At1g77200              --------->ARR14(2)             --------->RAP2.6(2)      --------->DREB2C(2)          <------NtERF2 <---------ZAT14             --------->ANAC46         --------->MYB46(3)         <---------DEAR3(1) <---------At4g35610             --------->RRTF1(3)      --------->DEAR3(2)  --------->ANAC46     --------->ZAT2   ------          --------->ANAC46           --------->MYB46(3) ------->GAMYB  <---------ARR14(2)   ---------     <-----------GT1      ------------>CBF<---------MYB46(3)   ------->GAMYB <-----------RAV1(1) -At4g35610  --------->RRTF1(2)   --------->MYB46(3)--------->ATERF1(1)--------->GLK1(2)<---------bZIP60(1) ------>CBF <---------LBD16   <---------ATHB12<------NtERF2   --------->MYB46(3) --------->At4g35610 >At4g35610 --------->RAP2.3(1) <-----------GT1<---------RAP2.3(2)------>NtERF2  <---------At4g35610   aatcttttttcttcgccgcaatctcatgtccaattatccaccgacggtggcggcgcaacccacaacgacggcgaatccactgctgcagcgacatcaatct  269100                                                                          <---------At4g35610                                                                          --------->At4g35610                                                                   --------->WOX13(1)                                                                 --------->WRKY18(1)   <----------ID1                                               <--------ZAP1              <---------GLK1(1)   --------->DEAR3(1)                                         ------>ZmHOX2a(2)     <---------DAG2 --->YAB1               <---------GLK1(2)                 <---------YAB1 --------->ANAC46  --------->GLK1(1) >WOX13(1)       --------->MYB52(1)       <---------REM1(2)  <------ZmHOX2a(2) --------->TOE2(3)   gaacagcgacgaagagaattaccgaagattgtcgaaacagagtctacaagtatggacattacgatcggtcaatctaagcagcctcaatttttgaaatcca  269200                    --------->At4g35610                    <---------At4g35610                    <-------GAMYB            <---------ANAC58            <---------ANAC46                            ------>ZmHOX2a(2)            <---------ANAC58                          <---------ARR11(3)             --------->ANAC58           <-------TEIL                  --------->ANAC58                            --------->ANAC46        --------->ZAT2   <---------ANAC46------->GAMYB--------->ARR11(3)             --------->ANAC58        <---------At4g35610              --------->ANAC46                          ---------->DOF2        --------->At4g35610              --------->ANAC58                   --------->WOX13(1)   tagacgaattagctgcgttttcagttgcagtggaaacattcaaacgccaattcgatgatcttcagaagcacatcgagtcaatcgaaaacgcaattgattc  269300                                        <---------ICU4                                        --------->YAB1                                        --------->AHL20(2)                                       <---------ATHB51                                --------->LBD16                               --------->ANAC58                                  <---------ARR14(2)                               --------->ANAC46                                  ------->TEIL                              <---------LBD16                                    --------->ARR14(2)                            <------NtERF2                            --------->At4g35610                        --------->ANAC46<--------ATHB1               <---------At4g35610                        <---------DEAR3(1)                           <---------LBD16                       ------>ZmHOX2a(1)--------->ATHB51             ------>NtERF2               <---                  --------->WRKY38(1)  --------->ICU4                --------->LBD16            -----                  --------->WRKY12     <---------ATHB12            <---------LBD16              -----                <-------GAMYB<---------ANAC46                     <---------ATERF1(1)           -----               <---------ANAC46--------->ANAC58                   ------>NtERF2 <---------CCA1(2)<---               <---------DEAR3(1)    --------->YAB1<---------At4g35610 --------->LBD16       --------             ------->GAMYB --------->DEAR3(1)      --------->At4g35610--------->ANAC46      <--------           <---------At5g28300--------->LBD16    --------->MYB46(3)---------->CDC5          <--------          --------->MYB52(1)------>NtERF2      <-----------HVH21 --------->DEAR3(1)         ---------   caaactcgagagtaacggcgttgtcctcgccgcgcggaacaataatttccatcagccgatgttatcgcctccgcggaacaatgtatctgtagaaaccacc  269400             ------->GAMYB            ===================================MYC_MYB            <------------AtMYB77           ------>MYB46(1)           ====================================MYC_MYB   <-----------HVH21                 <---------O2 --------HVH21    <-----------RAV1(2)--------->TGA1a ---->DREB2C(2)   <---------LBD16    --------->O2 ---->DEAR3(1)<-----------HVH21      ==========================================MYC_MYB  <---------ARR11(3) ---->ANAC46--------->MYB46(3)       <---------TGA1a           --------->ARR14(2)       --------->ARR11(3) --------TGA1==================================MYC_MYB         ------->TEIL <---------ANAC46 <------- ->AtMYB61 ------>MYB83         --------->LBD16        <---------------AtSPL8 --------->ALFIN1 -MYB55(2) -------->P<------ZmHOX2a(1)              --------->ALFIN1   <-------GAMYB  ----------->ARR10 -ABI4(2)--------->DEAR3(1)    <---------ANAC46   --------->LBD16      <---------At4g35610<---------DEAR3(1) >MYB46(3)--------->MYB52(1)  <---------LBD16   <---------LBD16<---------ARR14(2)   ---------->DOF2 <   gtcactgtgagccaaccgtctcaggagattgtaccggagacgtcgaataaaccggagggggaacgtatatgtgagttgatgtgtagcaaaggtctgcgta  269500  Previous    Next  AGI:  At4g00650.1    Description:  FRI (FRIGIDA). Identical to Protein FRIGIDA (FRI) [Arabidopsis Thaliana] (GB:Q9FDW0;GB:O65274); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48385.1); similar to FRIGIDA [Arabidopsis arenosa] (GB:AAZ92551.1); contains InterPro domain Frigida-like (InterPro:IPR012474) Range:  from: 269026    to: 271503    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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