Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------ANAC58                                                         <---------ANAC46                      <-----------RAV1(2)                <---------ANAC58            <--------ATHB1        <----------DOF2    <----------DOF2 -------At4g35610  --------->REM1(1)                --------->MYB52(2)                              < ------>At4g35610  --------->ANAC46            <---------YAB1                                   ----- -ANAC46    --------->YAB1  <---------ANAC58   <---------TOE2(3)          <---------CCA1(2)  -------- -ANAC58   <---------ATHB12 <---------ANAC58   <---------TOE1(3)          <---------At4g35610<------- -ANAC58   --------->ICU4  <-------TEIL     <---------AHL20(2)           ------->TEIL--------->AHL20(2)   agctgtttcttcaatgattctacaccaggtacttgtcttttgaaaatttatggttctttgcttgagatagacttgcatctctcttgataaaatccatctg  248300  ------>MYB83                                                                               --------  -------->P                              <---------DAG2                                     <-------  --------->ANAC46           <---------MYB59          <---------ANAC58                      <--------  ------>MYB46(1)           --------->At4g35610       <---------ANAC58               --------->TOE1(3) ---------ALFIN1         <---------MYB52(1)   <---------CCA1(2)                      --------->TOE2(3) ---->At4g35610   ---------->DOF2         <----------DOF2   <-----------GT1   --------->LBD16<------- --->RAV1(2) ----------->GT1<---------At4g35610   <----------DOF2    ------>ZmHOX2a(1)------>ZmHOX2a(1) --At4g35610 ------>ZmHOX2a(1)        ------>ZmHOX2a(1)<----------DOF2        ------>ZmHOX2a(1)   ctccaacccattgtcctgtgaaaagcccttagctaacttcctcgccttatagctttgcttttcaacaattcctagtattcctggtttccttagagaatct  248400                    <---------ALFIN1                                ------------>CBF                 --------->PCF2                            <---------WRKY38(1)                 ------>NtERF2                            --------->WRKY18(1)             --------->ALFIN1                            <-----------HVH21           <---------ANAC58                           ------>ZmHOX2a(2) ->GLK1(2) --------->ANAC55(2)                      --------->ARR11(3)                              - --ARR14(2)<---------ANAC55(2)                      <---------ARR11(3)       --------->YAB1       --- -GLK1(2)  <---------ANAC46             ---------->DOF2 ----------->GT1 <---------ATHB12          --- ----ARR10 <---------ANAC58   ---------->ID1      <---------YAB1  <----------DOF2     ---------->DOF2   ctgtcttcatataacgtgaggcccacttatttggcccatagagaaagaagttatgatctggtcaaaccctttcaatgagtcataaaccaaaagagagaag  248500                                     <---------ANAC46                                 ------->MYC3                                 <-------MYC3                                --------->ANAC46                              <---------ALFIN1                             ------>MYB83                             -------->P                             <---------REM1(2)                             ------>MYB46(1)            ---------->DOF2<---------MYB59    <------ZmHOX2a(1)      --------->AtMYB61     --------->AHL20(2)                         --------- --------->DOF2      --------->GLK1(2)         --------->ANAC46                         <----------DOF2 ------>ANAC58       <---------ARR14(2)        --------->ANAC58                     --------->DAG2 ------>ANAC58       --------->ARR14(2)        --------->ANAC58   <---------GLK1(1)---------->DOF2  -   acgaaaggacgatgaaaagagagaatcgacctacacgttgtgttttcccaagtaattaagcgtttttgatttcccaaaaaaaacataaagcttttcatat  248600          <---------GLK1(2)        --------->ANAC58        --------->ANAC58    --------->ANAC58    --------->ANAC58                                                                            -----    --------->ANAC46 <---------YAB1             <-------TEIL                                  ------- >YAB1---------->DOF2----------->TBP      <---------ZAT14                           <---------AtLEC2 ----->ZmHOX2a(1)    --------->AHL20(2)  --------->ALFIN1                         <-----------GT1  --   tcctctacgaaagaaactcgcttataaatatcaaacagagagagtggagtttcattttcttctcaacttcatcaaaaccctattttgcatttctcttaca  248700                                                                      <---------ATERF1(1)      <-----                                                                --------->ALFIN1            <--------                                                              <---------MYB52(1)            <--------                                                          <-----------------AGL1            <--------                                                        <---------GLK1(1)                xxxxxxxxxxxx                         --------->ANAC58   --------->ZAT6----------------->AGL1       --------->ATHB12                         --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->ICU4  --------->YAB1      <---------MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------YAB1 ---->YAB1           --------->LBD16   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          --------->YAB1 ----->CBF         <---------LBD16  <----------DOF2     <-----------GT1      ----------->HVH21 ------ ------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <--------   ataatcttactgatggctgattccggttcgcaatgtgtctttgtgaagactagtattgatacccgtttggggctactccttgacagtcatgatagcgtgt  248800                                                        <----------DOF2     ---------->DOF2                                    --------------->AGL15 <----------DOF2                                        <---------------AGL15 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <---------DAG2 ----ARR14(2)                                          <-----------------AGL3 -ANAC46                                          <------MYB46(1) -ANAC55(1)                                       <------MYB83 -ANAC58             <---------GLK1(2)            ----------->GT1                                <--- xxxxxxxxxxx>smallRNA(i2)       <----------DOF2  --------->MYB59  <-----------GT1          <---------YAB1 --->ARR14(2)        <---------ICU4     <------------------------ANAC81                 <---------YAB1 -ANAC58          --------->YAB1<---------DAG2   --------->MYB46(2)                  <---------YAB1   cttctttcaaaggtgactcttcataatctcttccctttttttttttttagtttggtaactttttgtagtaactaaactcttaaactcatgtttattgttg  248900                                                                                        <---------ALFIN1                                --------->ANAC58                          <---------ANAC58                                --------->ANAC46           --------->REM1(1)    ----------->GT1                  --------->GLK1(2)                        --------->bZIP60(2) <---------TOE2(3)        <-----------GT1         --------->ANAC58         ----------->RAV1(1)   <---------TOE1(3)   <---------AHL20(2)   ---------->DOF2           <-----------RAV1(1)     <---------ANAC58          - ------ANAC46    <---------GLK1(2)                --------->ALFIN1        <---------ANAC46 <---------   tttgtttattttacagacaaattctgcaaagaacacgaactgtgttttccaagtgttggcaacatcactgtttctgccttgaaggtaacaacactttctc  249000                                                                                        --------->YAB1                                                                                        --------->ATHB12                                                                                        -------->HAHB4                                                                                        <---------ICU4                                                                                       <---------ATHB12                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                          <---------TOE1(3)     <----                                                                          <---------TOE2(3)<---------ICU4                                               <------ZmHOX2a(1)         <---------DOF5.7(2)  <------                                         <---------TOE2(3)             --------->DOF5.7(2)<---------YAB1      <-------MYC3                       <---------TOE1(3)           <------MYB46(1)   --------->ICU4   <---------ALFIN1               --------->MYB46(3)                <---------TOE1(2)  <---------YAB1 -------->MYB46(3)           ------->GAMYB     <---------------AtSPL8<------MYB83 ----------->GT1  XX -DOF2------->MYC3       --------->MYB46(3)<------ZmHOX2a(1)   <---------ANAC46  <---------ZAT6 -----   taacaacacgtttttgttttggaatcaacaacgacaacaacttaaggaaggagtacttgtttttggtttgtaggttaacgtgagtggtaatgattatcac  249100                                                                                 <-----------RAV1(2)                                                                                 <---------HSFB2a(2)                                                                           <---------ANAC58                                                                           --------->ANAC55(2)                                                                           <---------ANAC55(2)                                                                           <---------ANAC58                                                                          --------->SPL7                                                                          <---------TOE1(2)                                                                        <---------SPL7         ------                                                                       --------->TOE1(1)       <-----            <---------ARR11(3)                                         --------->TOE2(1)       ------            --------->ARR11(3)                                   --------->WRKY45--------->HSFB2a(2)           --------->YAB1                                        --------->WRKY38(1)           <-----     --------->GLK1(2)   <---------ARR11(3)                     <---------MYB52(1)       --------->DAG2    <---------GLK1(2) --------->DAG2                           --------->At4g35610  <------ZmHOX2a(1) -----ANAC55(2)      ---------->DOF2                   <-----------GT1<---------------AtSPL3 -------- -----GT1 <---------YAB1 --------->ARR11(3)        <----------DOF2<---------WRKY18(1)   ---------->DOF2 XXXXXXXXXXXXXXXXX>MIR3434                      <------ZmHOX2a(1)----------->HVH21 --------->LBD16 ---->ANAC55(2) ----------->GT1      <------NtERF2 <---------DAG2--------->WRKY12<---------LBD16   ttgtccgattctatgatattgaaaaaagctcttcaaggcctcagtaacgaggacttttttctatccgttgacctcgtacgtgtccaggagaaaagtgagc  249200  Previous    Next  AGI:  At4g00580.1    Description:  COP1-interacting protein-related. similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT2G01800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42460.1) Range:  from: 248713    to: 250258    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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