Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->At4g35610                                                                                      ---------->DOF2                                                                                    --------->ANAC58           --------->ANAC58                                                     --------->ANAC58     --------->ICU4                                                             --------->ANAC58  ---   --------->YAB1                     <------MYB83                             --------->DAG2   -----  <---------YAB1                      <------MYB46(1)                         ---------->DOF2-------- ---------->GT1                      <---------AtMYB61                  ------------------------>ANAC81 --DOF2    --------->ANAC58  ---------->DOF2     ----------->GT1    ---------->DOF2 --------->ANAC58   aattgtgataatcaagaaactttagaaatttgaaagcgggaggtttttggatagtgaaatttcttagttccaaagaacaataaagcaagaaagcagaaag  213300                                                                                            ---------                                                                                          <---------MYB52(2)                                                 --------->AHL20(1)                      <---------ANAC55(2)           --------->YAB1                        <---------AHL20(2)                      --------->ANAC58           --------->TOE2(3)                     --------->AHL20(2)                      --------->ANAC55(2)    ---------->DOF2     <------ZmHOX2a(2)        <---------YAB1      --------->GLK1(1)   --------->ANAC58 -------->GT1 --------->YAB1         <---------AHL20(2)         <---------LBD16 --------->DAG2 ---->At4g35610       --------->At4g35610       --------->AHL20(2)--------->LBD16----------->GT1 <--- -->DOF2   --------->TOE1(3)        --------->YAB1            <-----------GT1  ---------->DOF2 ------   cagaaaaaaagaaccataaaaatcagatcaaatgactataaaaatcgcaattttattgaaaatttcaccggaattcaaaaaaaaagtaagtaagtaacga  213400                                                   ----------->GT1                                                  <---------TOE2(3)                           -------                                                  <---------TOE1(3)                        <---------                                                 ---------->DOF2         <----------DOF2  --------->TOE2(3)                                               --------->DOF5.7(2)--------->MYB52(1) --------->YAB1      --------->MYB52(1) --------->AHL20(2)   --------->TOE1(3)--------->ANAC46     <---------YAB1  <---------ARR11(3)   --------->TOE2(3)      --------->TOE2(3)--------->ANAC58    --------->ARR11(3) >MYB52(1)             --------->TOE1(3)     ----------->GT1   --------->ANAC58<---------AHL20(2) ---ZmHOX2a(2)         <----------DOF2 ---------->DOF2       ---------->DOF2  --------->AHL20(2) ->GAMYB   ---------->DOF2       ---------->DOF2 <---------DOF5.7(2) ------->GAMYB <---------ARR11(3)   tcaagaactaagagaaagtctgaaactttaaatttgaaaggaaaagaacgttaaagttaaaatcaaagcaacggtctttatttaatatcatacctttaaa  213500                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  ---                          ---------->DOF2                                                         <--                    --------->SPL7                                                               ----                    <---------TOE1(2)                                                            <---                    <-------TEIL  --------->AHL20(2)                                             <---                    <---------TOE2(2)             --------->AHL20(2)                             ----                    ------->TEIL  <---------AHL20(2)                                             <---                  --------->TOE2(2)               --------->YAB1                                <----                  <---------SPL7  <---------AHL20(1)                   <-------GAMYB            -----                  --------->TOE1(2)         --------->TOE1(3)         --------->LBD16           <----                <---------------AtSPL3      --------->TOE2(3)       <---------LBD16             -----                <---------------AtSPL8     ----------->GT1   --------->ARR14(2)                <----- --->DOF2       --------------->AtSPL3    <---------TOE1(3) ------>MYB46(1)                ---------- -DOF2          --------------->AtSPL8    ------->TEIL      ------>MYB83                 <----------DOF2   gcttcttcttgaatttgaaacgtacgtttaaagcaaaaaatttgaacgttaataaaaaaaccaaattccctccggttgaatcgaaatcgttctttaagcc  213600    --------->LBD16 --------->MYB52(1) ---------SPL7 ----->NtERF2 ------->DEAR3(1) ------->ETT(2) --------->HVH21 --------ETT(2) ------>ATERF1(1)                                             --------->HSFB2a(2) ------>RAP2.3(1)                                             <---------HSFB2a(2) ----NtERF2                        ---------->DOF2            <-----------RAV1(2) -->NtERF2                     --------->At4g35610          <------ZmHOX2a(2) ------ATERF1(1)               <---------At4g35610      <---------TOE1(2) ------RAP2.3(1)              <---------TOE2(1)         --------->SPL7 ----->LBD16               <---------SPL7               <---------TOE2(2) ------DEAR4(2)            <-----------HVH21          --------->TOE2(2) -----ATERF1(2)          --------->DEAR3(2)           --------->TOE1(2) ---->DEAR3(1)        --------->ETT(2)               ------>ZmHOX2a(2)                          ----- -----DEAR3(1)        --------->ZAT18     <------MYB83<---------SPL7                    <---------ANAC58 ---->ATERF1(2)      --------->ALFIN1     <------MYB46(1)  <---------ARR14(2)           <---------ANAC58 ----LBD16   ----------->GT1  <---------TOE1(1)     <---------------AtSPL3         <---------DAG2*TSS >DOF2       <---------ANAC46--------->SPL7         --------------->AtSPL3         <----------DOF2   ggcgaccggaaaatggagtaaatgtggaccgtccgatgaaaggaaggtagactgatcgtacgatccagacgatgaattgaagtgacttttccttggcttc  213700                                                                                     <-----------RAV1(1)                                                                                   <---------ANAC58                             ----------->TBP                                 --------->YAB1   -------                         --------->YAB1                                     <---------YAB1 <---------ANAC46                        <---------ATHB12                                <----------DOF2    <---------ANAC58                      --------->GLK1(1)                                 <---------DAG2     <---------ANAC58 ---->REM1(1)     --------->YAB1       <----------DOF2              <---------ZAT14<---------ANAC58   aacaagtgtttttggttctatgagaaatcatacaaatacctctttaacacctatttgtctatttggctactatactttatcattttcttgttggcttaaa  213800                                                                   -------->ATHB1                                                                   --------->ATHB51                                                                   <---------ICU4                                                                  <---------ATHB51                                                                  --------->ICU4                                                                  --------->AHL20(2)                                                               <---------AHL20(2)                                                        --------->ANAC46                                                        ----------->RAV1(1)                                                       --------->MYB46(3) --------------->AGL15                                                      --------->ANAC58    >>>>>>>>>>>>>>>>>LFY                                             ------>ZmHOX2a(2) <---------AHL20(1)                                            <------ZmHOX2a(2)  --------->AHL20(1)                                     --------->ATHB12 --------->ANAC58    <---------------AGL15                                     <---------ICU4 <---------ALFIN1    --------->At4g35610                          <-----------GT1  --------->ARR14(2) --------->AHL20(2)                  --------->YAB1    <---------YAB1<---------ALFIN1<---------AHL20(2)                 <---------ATHB12   --------->ICU4--------->AtMYB61--------->ATHB12      <---------ZAT14<---------GLK1(2)     <---------ARR14(2) <---------AHL20(2)         <XXXXXXXXXXX -->AHL20(2)   --------->WOX13(1)<---------YAB1--------->ANAC46--------->AHL20(2)      --------->AHL20(2)   atatagactatagttttcaatcagaatttttcattttgattattggatccctccacacccacaaataaattattagctccaatgggaaattatacatatg  213900                                                      <-----------GT1            <---------WOX13(1)                    <----------DOF2          --------->ATHB12                     <-----------GT1          <---------ICU4                  <---------AHL20(1)         <---------YAB1                  <---------AHL20(2)                                   -------         --------->ICU4              --------->AHL20(2)  <----------DOF2                      <------        <---------TOE2(3)            <---------AHL20(2)  <---------DAG2                       -------       --------->YAB1        --------->YAB1<---------AHL20(2)                                --------   --------->ATHB12         <---------ATHB12   <---------AHL20(2)              ----------->GT1<------ XXXXXXXXXMIR849            --------->ICU4--------->AHL20(1)     ------->TEIL <---------TOE2(3)<-----   tttagttattgatgattgcacattcgaccaatgatcaatttatatatattttcttttcacttttacgaatttagacatctaatgtaaatttagaattata  214000                                           --------->ATHB12                                      <---------YAB1                                     --------->AHL20(1)                                     <---------AHL20(1)                                     --------->ARR11(3)      ------->TEIL        <---------AHL20(2) -->AHL20(1)              --------->AHL20(2) <---------WOX13(1)                                <----- ---AHL20(1)              --------->YAB1  <---------YAB1                                   <---------WRKY18(1) -->AHL20(2)          <---------AHL20(2)<----------DOF2     <---------MYB46(3)            --------->WRKY38(1) ->YAB1      <---------ARR14(2)      <---------ARR11(3)    --------->ALFIN1           <<<<<<<<<NAM ---AHL20(2) --------->ARR14(2)     --------->RVE1(1)    --------->ALFIN1    ------->TEIL --------->WRKY12 ----YAB1   <---------CCA1(2)       --------->CCA1(1)    <---------O2      <<<<<<<<<EIN3  -----------   atttgttgaaccccatatatgtattcaattatatgaaaatatctttgattgaagatgagatgtgggtgaatgttcaatgtatatatcatcccttgacctt  214100                                                                                                 <---                                                           <---------AHL20(2)                    ----                               --------->YAB1              <---------YAB1           <---------AHL20(2)                        <------MYB83                      --------->AHL20(2)        <---------AHL20(1)                        <------MYB46(1)              <---------AHL20(1)             --------->AHL20(2)                        <---------DEAR3(2)           --------->AHL20(1)             --------->AHL20(1)                      <---------ORA47(1)  --------->ATHB12<---------AHL20(2)       --------->AHL20(2) <---------AHL20(2)<---------AtMYB61<---------ALFIN1 <---------AHL20(2)            <---------AHL20(2) -----DOF2      --------->ATHB12  <-----------GT1    --------->AHL20(2)       <---------MYB52(1)----- >HVH21        --------->ICU4  ----------->GT1      --------->AHL20(2)<-----------HVH21         <----   tatatttttaagaagtaatctttggtcggtctatagtaacacctccattgggaattttattttaattctatgtgtcaaccgtttattaaattagaccaat  214200  Previous    Next  AGI:  At4g00460.1    Description:  ATROPGEF3/ROPGEF3 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor/. similar to ATROPGEF2/ROPGEF2 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor/ / protein binding [Arabidopsis thaliana] (TAIR:AT1G01700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75305.1); contains InterPro domain Protein of unknown function DUF315, plant (InterPro:IPR005512) Range:  from: 211081    to: 213697    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version