Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------AHL20(2)                                                 --------->ANAC58                           ---------                                                 --------->AtLEC2           <----------DOF2 ---------    <-----------GT1                              --------->ANAC58           <---------DAG2  --------- ------->TOE1(3)                              <-------TEIL    --------->AHL20(2)        --------->ANAC46 ------->TOE2(3)           <-----------GT1<---------------AtSPL8--------->MYB52(1)     <---------LBD16 ------TOE2(3)            <-----------GT1---------->DOF2 --------->YAB1  ------>NtERF2<---------At5g28300 -------GT1   ---------->DOF2 ------>ZmHOX2a(1)  --------->ANAC46      <------NtERF2--------->MYB46(3)   acgttaatacaattttcaaagcattgtttttcctctccttggagaaagtacatgcaaaatcaaaattaatggctccgacttttcgaatcaccgcaagcta  178600                                           <---------YAB1                      <---------------AtSPL8                      --------------->AtSPL8                                         --------->ARR11(3) >ANAC46            --------->YAB1  <---------GLK1(2)    --------->ANAC58            <---------ARR11(3) >ANAC58           <---------YAB1 ----------->ARR10      --------->ANAC58          --------->ICU4 >ANAC58      ----------->GT1 --------->ATHB12         ---------->DOF2           ---------->DOF2   ctatctcttcgagttctggttataatagtacttgattagatacttcttataaggcttaaaagccaacttaaatgctattgcagtaaagatttcattcctt  178700                                                                                  <-----------GT1                                                                                 <-----------GT1                                                                               <---------AHL20(2)                                                                            --------->ARR11(3)                                                                            --------->AHL20(1)               --------->GLK1(2)                                            <---------AHL20(1)               ------->TEIL<---------AHL20(2)                               <---------ARR11(3)        <----------DOF2   --------->ARR11(3)                              <---------AHL20(1)        <---------DAG2    <---------AHL20(1)                              <---------ARR11(3)    <---------ZAT14       <---------ARR11(3)                              --------->ARR11(3)    --------->ZAT14    <------ZmHOX2a(1)                ----------->GT1   --------->AHL20(1)  --------->ANAC46 ---------->DOF2    <<<<<<<<<TBF1  ---------->DOF2   --------->AHL20(2)   cttcacttcactttacgaatctaaaggatatatttagttcttcttcacttcaactaaaaggctaaactcccaaaaaaatatttttatctctctcaaaact  178800                                                                <------------CBF                                                               <---------ICU4                                                               --------->ATHB51                                                               --------->ATHB12                                                           <---------AHL20(2)                                                          <---------AHL20(2)                                     --------->ANAC58   <---------YAB1                                     --------->ANAC58<---------AHL20(2)    --------->ARR11(3)                                ----------->HVH21    --------->AHL20(2)    <---------ARR14(2)       -                              <---------At4g35610    <---------AHL20(1)    <---------ARR11(3)      <-                           <-------TEIL           --------->AHL20(2)<---------ANAC58              <--                       --------->ANAC58           --------->AHL20(1)<---------ANAC58              ---                       --------->ANAC58           <---------ARR11(3)<---------ANAC46              ---                       --------->ANAC46    <---------ETT(2)<---------YAB1  --------->ARR14(2)     <--           <------ZmHOX2a(1)--------->REM1(1)------------>CBF <---------YAB1               <---------AtLEC2         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------AHL20(1)<---------AtLEC2 ------------>CBF   tgaaatatggtgaggaagactactcaagctacatctcacaaggtatcgacaatattttatttttattattgcatgaagatttgttttgtcaatgcatgaa  178900                                             <---------ARR14(2)                                             --------->ARR14(2)                                             <---------GLK1(2)                                             --------->ARR11(1)    ----------->HVH21                                      <---------ANAC55(2)        <---------At4g35610                                 <--------HAHB4           <---------ICU4  <---------------AGL15          <---------ICU4           --------->ATHB12 ----->ZmHOX2a(2)                --------->YAB1           --------->YAB1 -----ZmHOX2a(2)                <---------YAB1    <---------MYB52(1)    --------->ANAC58     <------- -------ARR11(3)               <-----------GT1 <-------TEIL<------------CBF     ------------>CBF ------>ARR11(3)            <---------AHL20(2)--------->ARR14(1) --------->At4g35610       <---------YAB1 ------>ARR14(2)          <---------YAB1   ----------->ARR10    ------->TEIL  <---------ETT(2)    --- -------ARR14(2)       <---------AHL20(2)  <---------YAB1<---------YAB1 --------->ANAC58<---------AHL20(2)   gatcccaaaacttgaaatatggtgttttatttttatcattacatgaagattcgttttttatcattgcatctcacaaggtatcgacaatgttttattttta  179000                                      --------->TOE2(3)                                     --------->ANAC58                                   ------>ZmHOX2a(2)                                     --------->ANAC58                                  <------ZmHOX2a(2)                                     ----------->GT1     <---------ZAT14              <---------ARR11(3)                                     --------->ANAC46 --------->At4g35610             --------->ARR11(3)                          <---------ANAC46            <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->AGP1                          ----------->GT1            --------->ANAC46          --------->DAG2            <------MYB46(1) <---------ZAT6 <---------WOX13(1)          <---------HSFC1(2)     <----------DOF2    --------->ZAT14   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)---------->DOF2 --AHL20(2) <------MYB83<---------ZAT14<---------MYB52(1)--------->ZAT14   <---------ANAC46 ------>TOE2(3)         --------->REM1(2)--------->MYB52(2)            --------->HSFC1(2)   tcttagtctttgtttggttttatgtgtgtagtgaaaaccacgttaattgactcatacgctgcacaatgttggaagtgtcttaaagtgagatctatagagt  179100                                                                            --------->CCA1(2)                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                           --------->ARR11(1)                                                                           <---------ARR11(3)                                                                           --------->ARR11(3)                                                                     <---------LBD16                                                                    ----------->RAV1(2)                       ----------->GT1                             --------->GLK1(2)                   <-------TEIL                                    ------->TEIL----------->GT1                  --------->GLK1(2)                               <---------ARR14(2)                 <---------GLK1(2)                                --------->ARR14(2)               ----------->ARR10                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------YAB1                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------YAB1      --------->ARR11(3)              --------->DAG2              --------->ARR11(3)     <----------DOF2   <XXXXXXXXXXXXXXXXXXXXXMIR831      ---------->DOF2       xxxxxxxxxxxxxxxx>smallRNA(s)------->TEIL   cacaagaagattatgaagagattcgtagtaaaacactggaaaagttttttgaatgcaagagatgtgaagaacctggagatatggtaatgaactttgattc  179200                   <------ZmHOX2a(1)                <---------LBD16                <-----------RAV1(2)           <------MYB46(1)           <------MYB83                                                                     <--------           --------->MYB52(2)                                                       <---------ANAC46           <---------MYB46(3)                                                       <---------ANAC58          <---------AtMYB61       --------->ANAC46                             --------->MYB52(1)         <---------MYB52(1)    --------->ARR14(2)                    <---------ANAC58   ---------->DOF2       <---------ANAC58        --------->ZAT14                       <---------ANAC58--------->LBD16       <---------ANAC58 ------->TEIL--------->ANAC46             <---------AtMYB61  <---------ANAC58   ccttactatgcgttggtttcaggatgaacatagtatacccaaaacccctcaaggtttgaagagagttttggtcgtgagaacaaactgcgtgaaagtcgat  179300                                   --------->AHL20(2)                                ----------->GT1                        --------->ANAC58          --------->ATHB12     ----------->GT1          -------->ATHB1--------->ANAC46          <---------ICU4--------->ANAC58                                            ---------->DOF2         <---------ATHB12 ---------->DOF2                                          --------->AHL20(2)        ------->TEIL------>ZmHOX2a(1)                                    --------->ANAC58  ----------     <---------YAB1 <---------HSFB2a(2)       <---------TOE2(3)          --------->ANAC58  ---------- -------------WRI1  --------->HSFB2a(2)     ---------->DOF2--------->TOE2(3)       <---------AHL20(2)   gtttactatgaatcattggctcctagacgaaagaggtttaaatctataaaggaagttgcaacgtttattgaagacaaggaagaatttaaagacatgacgc  179400                            --------->At4g35610                        --------->MYB52(1)                     --------->MYB46(3)                    --------->ANAC58                    --------->ANAC58                   --------->RAP2.3(3)                  <---------ALFIN1                 ------>NtERF2                                                     <------ZmHOX2a(1)                 <---------At4g35610                                   --------->ANAC58                 <---------SPL7                     <---------ETT(2)   --------->ANAC46 ->TGA1         --------->RAP2.6(2)     ---------->DOF2      <---------YAB1      <---------TOE2(3) ->HVH21  <----------DOF2--------->RAP2.6(3)        --------->ETT(2)   --------->ANAC58   ttgaagaggtttcttttgccgcacccaaacggctgaaactaaaaaagaaacctgtcgatagtcattctagctcaaggaacactgaggaagatggtgtctc  179500  Previous    Next  AGI:  At4g00416.1    Description:  MBD3 (methyl-CpG-binding domain 3); DNA binding. similar to MBD4 (methyl-CpG-binding domain 4), DNA binding [Arabidopsis thaliana] (TAIR:AT3G63030.1); similar to unknown [Populus trichocarpa] (GB:ABK94623.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124); contains InterPro domain Methyl-CpG DNA binding; (InterPro:IPR001739) Range:  from: 179022    to: 179513    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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