Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ---------->DOF2                                                                                      --------->ANAC58                                                                                   --------->LBD16                     <---------ANAC46                                             --------->ANAC46                     <---------ANAC58                   --------->GLK1(2)         <---------HSFB2a(2)            --------->ICU4                 <------ZmHOX2a(2)                      --------->HSFB2a(2)            <---------YAB1                 ================HOX2a_HOX2a           <---------LBD16          --------->YAB1                  --------->ARR11(3)                   --------->ARR14(2)          <--------HAHB4                  <---------ARR11(3)                  <---------GLK1(1)          <---------ICU4           ---------->DOF2  <------ZmHOX2a(1)       <---------HSFB2a(1)     <         <---------YAB1 <---------TOE1(2)<---------GLK1(1)         --------->WOX13(1) --------->ANAC58       --------->YAB1<---------ANAC58    --------->GLK1(1) <----------DOF2  --------->HSFB2a(1)     <   aaaggcttagcatcattatgcaggcgtatgttcgatgaaaaggagatcatcgaaggagaagcttttggtccatcaagaaggtttccgcaagtaaaggccc  125200                                                                                            ------>NtERF2                                                      <---------ARR11(3)                   ------>NtERF2                                                      --------->ARR11(3)                   --------->LBD16                                                <---------AHL20(2)                       <---------LBD16                                            ----------->GT1        <---------ANAC58  ------>MYB46(1)             <------ZmHOX2a(1)         <---------ANAC46            <---------ANAC58  ------>MYB83 ---------ANAC58                       <---------ANAC58  <----------DOF2           <---------MYB59 ---------ANAC58                       <---------ANAC58 ------>ZmHOX2a(2)          <---------MYB46(2)   tggcatgagagtttaggagaccagaacacgattttgcagtggcatgaggttttattgatctttgaattgacttgagaagcgataacctaactccggccat  125300                                                      --------------->AGL15               <---------ANAC58                                                      <---------------AGL15             <---------ARR11(3)                                                   <-----------GT1          <---------ZAT18         --------->YAB1                         --------->TOE2(3)           <---------ZAT14  --------        <---------ATHB12 <------ZmHOX2a(1)<-----------GT1                 --------->ZAT14 <---------ANAC58 ===============================HOX2a_HOX2a     --------->YAB1           <---------ZAT6 --------->ARR11(3) ------>ZmHOX2a(2)    --------->YAB1      --------->YAB1       >>>>>>>>>TBF1--------->ZAT18  <-------   tgatctacaaatcaaaatcaaaaatcaggatttagaagtcttaatcacattcttaaccaattgaagaagaacacagtgttcactaattaagagcttgcta  125400                    --------->AGP1                    <---------ARR11(3)              <------NtERF2              ------>NtERF2                                                                       ---             <---------SPL7                                      <---------CCA1(2)               <---            <---------ANAC58                                   ----------->GT1              ---------            <---------ANAC58                               --------->ARR11(3)          <---------TOE1(3)       <---------ICU4<------ZmHOX2a(2)               <------ZmHOX2a(2)                 <---------TOE2(3)      <---------ATHB51                               <---------YAB1      <---------LBD16    <-------- ->STY1(2)  <---------ANAC46       <---------WRKY12 --------->ARR11(3)  ----------->RAV1(2)--------->MYB111(2) --STY1(2) <---------LBD16--------->DAG2            <---------ARR11(3)  <---------ANAC46  <--------P   gagtttcgataatggcggaccagatcaaaaattgaagtcaatggaatgtgaagagatcatagaacttgtatattacctggagagacttgaaggtagctag  125500                                                <---------ANAC58 ------>GLK1(2)                                 <---------AtLEC2 ------GLK1(2)                     --------->GLK1(1)  ---------->DOF2                --------->CCA1(2) >STY1(2)                 ---------->DOF2       <---------ANAC58           >>>>>>>>>TBF1 ----------->GT1 -STY1(2) <---------GLK1(2)   ---------->DOF2 <---------YAB1  ---------->DOF2 >>>>>>>>>TBF1*TSS   attcttagccaaaattctcgctgagagataaagaaagaattctaaattttgcttggcaaagagggaaagaagatgaagaagaagaagagacaggtttatt  125600                                                                         <---------YAB1                                                                         <---------ATHB12                                                             <----------DOF2                   ----------->GT1                          <---------DAG2<--------ATHB1                --------------------->WRI1                  <----------DOF2         <-----------RAV1(1)             <---------YAB1   --------->O2             --------->HSFB2a(2)-------->HAHB4        <---------At4g35610   <---------O2             <---------HSFB2a(2)--------->ATHB12 <---------WRKY12 --------->MYB59                    ----------->RAV1(2) --------->ICU4   tcgtcaactctgcttcttattcggtaacatcgacgtcgttttagtcaccttcaacttctgggccttttgggcctaatgattcaaatttgttgggcttaat  125700                                                                                                 ----                        --------->TOE1(3)                                                      ------                        --------->TOE2(3)                                                     -------                        <---------------AGL15                                                 -------                        --------------->AGL15                                                 <------                       ==============================================================================              <---------ANAC58                                                   ------->TEIL <------              <------MYB46(1)                                                    <-------TEIL--------              <---------ANAC58                                                <---------ANAC55(2)<---              <------MYB83                                             <---------MYB59       <-------         <---------AHL20(2)                 --------->ANAC58          <---------ANAC55(2)    <-------        --------->AHL20(2)                  --------->ANAC46          --------->ANAC55(2)  --------->YAB1        <---------AHL20(2)                  --------->ANAC58----------->GT1  --------------->AtSPL8       <---------WOX13(1)      <---------TOE2(3)    ----------->GT1 <---------AHL20(2)    <---------AHL20(2)    <---------YAB1     ----------------->AGL3  ---------->DOF2      <-----------GT1   --------->AHL20(2)   gcaagtttgattaatttggtgcaaaaccttattaagaaacacacacacacaaagttgtgaatttgtgaatttacttaactacgtacatatatataatcat  125800      <---------At5g28300  --------->WOX13(1) <---------AHL20(2) --------->AHL20(2) ----->AHL20(2) --->TOE2(3) -->ATHB12 -->YAB1              <---------AHL20(1)                                <---------ARR14(2) --HAHB4              --------->AHL20(1)                                --------->ARR14(2)    <------ =====================================MADS_MADS                        <---------CCA1(2)      ------- ---ICU4             --------->AHL20(2)                             <---------MYB59           ------- ->ICU4             ================================================================================= ------AHL20(2)     <-----------------AGL3                 --------->AHL20(2)                -------- --ATHB12  <---------MYB46(3)         --------->AHL20(2) --------->AHL20(2)          <----------ID1 --YAB1   --------->ALFIN1  ----------->GT1<---------ARR11(3)     ------->TEIL   <---------YAB1   taattaatcacggtgtttgtcaaatatatatggttacaaattcaatatgttttggacaaaataatatgtgcctaaatctgcttataaatgacaaaatata  125900                              <---------YAB1      --------------->AGL15 --------->YAB1      <---------------AGL15<---------YAB1            --------->ARR11(3)  --------->MYB46(3)     --------->YAB1            --------->DAG2 ---ARR11(3)         <---------RVE1(1)           ---------->DOF2                ------>ZmHOX2a(1) -->AHL20(1)         <---------CCA1(1)        --------->AHL20(2)               --------->TOE2(3)    < -->ARR11(3)        <---------ARR11(3)        --------->YAB1               --------->YAB1  <---------ARR14(2) =====================MADS_MADS   --------------->AtSPL8            ---------->DOF2     <---------ANAC46 ->AHL20(2)         --------->ARR11(3)       <---------ATHB12<----------DOF2   --------->TOE1(2)    -   tacaaccactaaaaatagaagagatatttatcatgaattgtactccaataaaaaaggtattgactttagacaaagtatcatcctaagatggagtattttg  126000                                                                         <--------HAHB4                                                                         --------->ATHB12                                                                         <---------ICU4                                                                        <---------YAB1                                                                        <---------ATHB12                                                                        --------->ICU4                                                                      --------->YAB1                                                                 <---------At5g28300                                                                <-----------GT1               --------->YAB1               --------->ANAC46 <---------ICU4<---------YAB1 <---------ANAC58               --------->AHL20(2)           --------->ANAC58<---------AHL20(2)            <---------ANAC58           --------->REM1(1)                --------->ANAC58--------->AHL20(2)<---------TOE2(3) ---------ARR14(2)                 <---------ANAC46        <---------YAB1--------->YAB1   <---------ANAC46 -------->ARR14(2)         <---------WOX13(1)           <---------MYB52(1)--------->TOE2(3)   caaatacttggctacaataaaaaaaactgatagatttgtgtgaaaaacgctattttcagttattaattactgtaatcattaatgttgaaatgtcgttttc  126100  Previous    Next  AGI:  At4g00290.1    Description:  mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00234.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39670.1); contains InterPro domain Mechanosensitive ion channel MscS; (InterPro:IPR006685); contains InterPro domain Mechanosensitive ion channel MscS, transmembrane-2; (InterPro:IPR011014); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 122851    to: 125591    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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