Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ----------->GT1                                     --------------->AtSPL3                                     --------->ANAC46                                   <-----------GT1   <------ZmHOX2a(1)    --------->ANAC58             <---------AHL20(2) ----------->GT1    --------->ANAC58       <---------ANAC58      <---------ANAC46                   <----------------    --------->ANAC46       <---------ANAC58      <---------ANAC58              <---------ANAC58 <----    --------->ANAC55(2)    <---------ANAC46      <---------ANAC58              <---------ANAC58 =====   gcatacacgtagtcccttgatgacatgaggcgtatttaaacggtacaacttgcgaggaaaaaaactctaataggttttgtttcgagtcccaagttgggat  36700         <---------MYB46(3)         <------MYB83         ----------->GT1         <------MYB46(1)        <---------AtMYB61 <---------ATHB12    ------>ZmHOX2a(1) -AGL1  --------->ALFIN1    <-----------GT1                                        --------->ZAT14 --ZmHOX2a(2) ---------->DOF2              <-----------GT1                  <---------------AtSPL8 ===========================HOX2a_HOX2a<----------DOF2                   <------ZmHOX2a(1)   caaatgaagggtggtttaaagtccttcttgttaccaagtgtcttttaacttctgaagttttgaattttgctcataggactagtacaacactcacagtctt  36800                         ---------->DOF2                                 --------->ANAC58                      --------->AHL20(2)                                 --------->ANAC55(2)                      <---------AHL20(2)                                 --------->ANAC58                     --------->AHL20(2)                                  --------->ANAC46                <------ZmHOX2a(1)                                   <---------YAB1              <---------TOE2(3)                                   --------->YAB1              <---------TOE1(3)                                   -------->ATHB1        --------------->AGL15                                    --------->ICU4        <---------------AGL15          --------->ZAT6            --------->AHL20(1)       --------------->AGL15         ----------->RAV1(1)         --------->AHL20(2)       <---------------AGL15        --------->MYB46(3)           <---------AHL20(2)      ----------------->AGL1   --------->ANAC58               <---------YAB1      ----------------->AGL2   --------->ANAC46              --------->AHL20(2)      ----------------->AGL3   --------->ANAC58              <---------AHL20(2)      <-----------------AG    --------->ZAT18         ------->TEIL<---------ICU4              -------      ----------------->AG--------->DAG2           <---------YAB1<---------YAB1        <----------DOF2   ctatgttttccaaattaaggaaatttaaaaagcacacaacaacactaagaaatatgaatcgattaaaattattatacgcattttgttttctttgtatcag  36900                                                             ----------->GT1                                                         --------->ANAC58                                                         --------->ANAC58                         <--                             <------MYB83            --------->ANAC46                     <---------ZAT18                             <------MYB46(1)    <-----------ARR10                         --------->WRKY38(1)   --------->YAB1            ----------->GT1    --------->GLK1(2)                         --------->ZAT18  <---------YAB1     ----------->GT1           <---------GLK1(2)                       <---------ANAC46 -->YAB1       <-------TEIL --------->MYB59---------->DOF2 ------->GAMYB               <---------MYB46(3)   aaaaatgatagtctacatacatatggtaatttggtaaataatacaaaaagaatctacacaaccaagtgaaaaatcaaaaatgtgtctggtcgtggactcc  37000                                                   >>>>>>>>>NAP                                                 <---------O2                                                 --------->O2                                                 --------->ANAC46                                                 <---------ANAC55(2)                                                 --------->ANAC55(1)                                                 --------->ANAC55(2)                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->TGA1a             --------->ZAT14                                                 ==================================bZIP_DOF                                                 --------->bZIP60(2)         <---------ZAT18                                                 <---------TGA1a        ---------->DOF2                                               <---------ALFIN1     --------->TOE2(3)            ----          <---------TOE2(3)                 --------->PCF2          --------->TOE1(3) --------->YAB1    <----------DOF2                     ===================bZIP_DOF <---------MYB59 *TSS   --------->MYB46(3)    <---------DAG2                      ---------->DOF2    --------->LBD16   --------->ZAT18------->GAMYB -------MYB52(1)<------------CBF      <---------YAB1      --------->LBD16--------->DAG2  --------->MYB52(1)   gatgggctttttgaggcaaattgaaaactgggccagaaatatgaaaggcccacgtaagtcccgaatataacctaaaaagcacactctctaataacagcca  37100                                       --------->LBD16                                   --------->ARR14(2)      --------->At4g35610                                   <---------ARR14(2)     --------->ARR14(2)                               --------->ZAT18            --------->GLK1(2)                               <---------ZAT14            <---------ARR14(2)                               <---------ZAT18           <---------GLK1(2)      <---------GLK1(1)  <-----------HVH21         --------->ALFIN1                                 <   <---------TOE1(3)  --------->At4g35610       --------->DAG2             <---------SPL7       -----   <---------TOE2(3)  <---------At4g35610  <------ZmHOX2a(1)              <---------ANAC46    <------ ----->ICU4 <----------DOF2    --------->ZAT14 ---------->DOF2   ------>NtERF2           <---------TOE1(2)   gaattagggtttctctttgtcttcagcagtcagtgcgcatccgtaggagaaaagtgtgagaatctgccaccatgggtcgtatgcacagtcgagggtttgt  37200                              --------->TOE2(3)                             --------->bZIP60(1)                             <---------bZIP60(1)                             --------->ANAC58                             --------->ANAC55(2)                             --------->ANAC58                             <---------ANAC46         ---------->ID1      <---------ANAC55(2)   <<<<<<<<<TBF1            --------->MYB59 <<<<<<<<TBF1          <---------YAB1                           <---------TOE2(3) ----->ID1           --------->YAB1      --------->GLK1(1)<---------YAB1 ---MYB46(3)        <---------YAB1  ----------->GT1       <---------ATHB12----------->GT1  <-------GAMYB   tcttcttcttcgtcttcttcgtattatagttacgtcaattgtgaaatctaacatatcgctatcatttatgtagaaagggtatttcagcctctgcgttgcc  37300                 --------->ZAT2                 <---------ZAT2                 --------->At4g35610                 <---------At4g35610                                                       --------->YAB1        ------>ZmHOX2a(2)               <------ZmHOX2a(1)                                  <---------ICU4       <------ZmHOX2a(2)             <-----------RAV1(2)                     <----------DOF2      <---------ARR11(3)      --------->AtMYB61                 <----------DOF2           <---------ATHB12      --------->ARR11(3)      <---------ALFIN1                  <---------DAG2           ------->TEIL   ttacaagagatcgtctccgagctggctcaagaccacctctcaggatgtaagttgatatcatctctacttttttgctctgctttgttgaatgaatcatgcc  37400                                                              ----------->HVH21             <-----------GT1                                  --------->WRKY38(1)          <---------ICU4                                     <---------WOX13(1)              <-------          --------->YAB1                               --------->DAG2                       ---------         --------->ICU4                            <---------------AGL15                  <---------LBD16         <---------YAB1                            --------------->AGL15         <---------ANAC46       --------->YAB1                             <-----------------AGL2       <------MYB83--------->ANAC46       <---------ICU4                             ----------------->AGL2     <---------WOX13(1)      --------->ICU4                              ----------------->AGL1    --------->ARR14(2)      <---------YAB1             ------->TEIL     ----------------->AG      <---------ARR14(2)    <---------ICU4         <-------TEIL      --------->ARR14(2)<---------WRKY18(1) ----------->ARR10   <---------YAB1         <--------P         <---------ARR14(2)<-----------GT1 <------MYB46(1)   --------->ICU4  ----------->HVH21--------->WOX13(1)---------->DOF2       <---------GLK1(2)--------   ttcacattattattattacatttgacaggttgatgaatcaatctgcaaatttgccaaaaagggattgaccccttcccagattggtgtgattctccgtgac  37500                                               <------ZmHOX2a(1)                                             <---------TOE2(3)                                         ------>ZmHOX2a(2)                                         =============HOX2a_HOX2a                                        ==============HOX2a_HOX2a                                        <------ZmHOX2a(2)                                       <---------ARR14(2)                                       <---------ARR11(3)                                       --------->ARR11(3)                                       --------->AGP1                --------->WRKY18(1)    <---------ARR14(3)      <---------ARR14(2)               --------->ARR14(2)      --------->ARR14(2)               <---------AGP1  --------->ANAC58                     --------->ARR14(3)        <---------ANAC58  --------->ANAC46           --------->HSFB2a(2)--------->ARR14(2)  --------->ANAC58     <---------ZAT6----------->ARR10           <---------ANAC58        <---------ANAC58 --MYB52(1)   --------->At4g35610--------->ANAC58                <---------ANAC46        <---------ANAC58 >LBD16     <-----------RAV1(2)  --------->ANAC58     ---------->DOF2               <---------ATHB12 --->HVH21 <---------MYB52(1)<---------HSFB2a(2)<---------ARR14(2)            <-----------GT1   tctcacggtatccctcaggtcaagagtgttactggaagcaagatcttgaggatactcaaagctcatggtgtgttttcaatttcccaatctttcgttctgc  37600  Previous    Next  AGI:  At4g00090.1    Description:  transducin family protein / WD-40 repeat family protein. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G42660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24478.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 34091    to: 36880    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g00100.1    Description:  ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome. Identical to 40S ribosomal protein S13-2 (RPS13B) [Arabidopsis Thaliana] (GB:P59224;GB:O81311;GB:P49203;GB:Q9SLR4); similar to 40S ribosomal protein S13 (RPS13A) [Arabidopsis thaliana] (TAIR:AT3G60770.1); similar to cytoplasmic ribosomal protein S13 [Panax ginseng] (GB:BAA96366.1); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589); contains InterPro domain S15/NS1, RNA-binding (InterPro:IPR009068); contains InterPro domain Ribosomal protein S13/S15, N-terminal; (InterPro:IPR012606) Range:  from: 37084    to: 38312    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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