Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <------NtERF2               <----------DOF2                                                       --------->ANAC58              <---------ANAC58                                                       --------->ANAC58              <---------ANAC58                                                      --------->LBD16        <---------ARR14(2)                                                   <----------TaMYB80        --------->ARR14(2)                                                   --------->GLK1(1)      < ------>At4g35610                <----------DOF2                 ------>ZmHOX2a(1) <-----------RAV1(2) -------At4g35610    --------->WOX13(1)    --------->ZAT14<---------ZAT18    <---------GLK1(1)      <   tgctaaaatggatttggctttagcaatcgaagactctttaagaactacagacttccctagcccagtcctgaacattgggatttccccaggcatcgcttct  10100                                                               ----------->HVH21                                                             --------->ANAC55(2)                                                             --------->TGA1a                                                             <---------ANAC55(2)                                                    <----------DOF2                                        <--------ATHB1       --------->O2                                        -------->HAHB4       ===================================bZIP_DOF                                        <---------ICU4       <---------At4g35610          --------->HSFC1(2)           <---------ATHB51      --------->At4g35610          <---------HSFC1(2)           <---------YAB1        <---------TGA1a --------->LBD16                     --------->YAB1 ===================bZIP_DOF ---------ANAC58                    --------->AHL20(2)       <---------O2            ---------->DOF2 ---------ANAC58      --------->TOE2(3)--------->ICU4    <-----------HVH21--------->ARR14(2)  -------   tcccgtgctataagcttcgagcatccttgaagcatcaaataataattcaatctcctttgagtcacatgacaaacacgattcgacaaaaaaaggaagaaac  10200                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                                                      <------NtERF2                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                   <------NtERF2                                                                  <------MYB46(1)                                                                  <------MYB83                                                                 <---------DEAR3(1)                      ------>ZmHOX2a(2)                         <--------P--------->GLK1(2)                      =========================HOX2a_HOX2a     <-------GAMYB                      ---                     <------ZmHOX2a(2)    --------->ZAT2       <---------ANAC58                  ----                     ==========================HOX2a_HOX2a     <---------ANAC58                <-----                    --------->ARR14(2)    <---------At4g35610 --------->ATHB12               <-------                    <---------ARR14(2)    --------->At4g35610 --------->MYB55(2)             -------- -->MYB52(1)       <---------GLK1(1)    <------ZmHOX2a(1)     <---------MYB46(3)             --------   gaagaatcaccttggagcaagagatcggccatagaaggtagaggagctgtcgattcgagcgccttggttggcgtagaatccgagacggactgaagaatcc  10300                                                        <---------DDF1                                                    <---------TGA1a                                                    --------->bZIP60(2)                                            -------->HAHB4                                            <---------ICU4                                            <--------ATHB1                                            --------->ATHB12                                            --------->ATHB51                                           --------->AHL20(2)                            ------>NtERF2  <---------AHL20(2)  <------NtERF2         --------->DEAR3(1) --------->ICU4 <---------ATERF1(1) --------->AtMYB61     <---------ATHB51   <---------AHL20(2) --->NtERF2         --------->MYB46(3)--------->LBD16  <---------ETT(2) ----->LBD16   --------->LBD16        ----------->GT1  --------->ETT(2) ----LBD16   <---------LBD16<---------At4g35610     --------->O2        <---------HSFB2a(2) --ARR14(2) --------->MYB52(1)      <---------LBD16 <---------O2        >>>>>>>ZML2     <-----------GT1 ->ARR14(2)<---------ALFIN1--------->DEAR3(1) <---------WOX13(1)        --------->HSFB2a(2)      ---- ->GLK1(2)--------->MYB46(3)--------->At4g35610     --------->TGA1a  --------->AGP1    <-----------GT1   ggccagcgacttcccaccggaaaccatcgccgctggaatcgggaaataattgccacgtcgacatttattcagttctagagtttcgaatttttccgactcg  10400                                                                                  <---------AHL20(2)                                                                                <---------YAB1                                                                             --------->AHL20(2)                                                                             <---------AHL20(2)                                                                             <---------AHL20(1)                                                                             --------->AHL20(1)                                                 --------->AtMYB61    ----------->GT1                                                 <---------ALFIN1     --------->LBD16                                               ------>MYB83         <---------LBD16                                               -------->P           <---------ZAT18                                               ------>MYB46(1)      --------->ZAT18                <------NtERF2               <---------ANAC58        <---------ZAT14               --------->LBD16              <---------ANAC58     <---------ANAC58 --------->AHL20(2)             <---------LBD16           <---------ICU4  *TSS      <---------ANAC58 <-----------TBP            <---------At4g35610        <---------GLK1(2)       <------NtERF2--------->AHL20(2)      < ------>ID1 --------->At4g35610     --------->YAB1 --------->ANAC46--------->ALFIN1       <----------   tcgttctctgattcagccggagaactaaacctcgcgattcagaattgcctaccacaccaagagtcgggagtgcggaaattttatttttatattttctgtt  10500                                                  ---------->DOF2                                               --------->LBD16                                             <---------LBD16                                             <------NtERF2                                            <---------DEAR4(2)                            <------MYB83                                            <---------RAP2.3(1)                        <---------ANAC58                                      ---------->DOF2                            <----------DOF2                                 ----------->GT1<------NtERF2                    ====================              --------->AtMYB61 --------->DAG2 ------>NtERF2                  <-----------GT1       --------->LBD16         ---------->DOF2<---------ANAC46               --------->AHL20(2)   ---      --------->ANAC46   --------->GLK1(2) <---------RAP2.3(3)          <------NtERF2  <---------ANAC58 ----------DOF2          <---------ARR11(3)<---------DEAR3(1)           <---------RAP2.6(3)     <---- -GT1--------->ANAC46    --------->ARR11(3)<---------RAP2.3(2)         --------->RAP2.6(2)<------MYB46(1)   ttctttccccccaaaaccatcaccaaaaatctaaaaagttaaaagacggcgggaaagttgaaaacgatttgggccgaaattaactttgggcttggtttta  10600                  --------->O2                                                                      <                  --------->TGA1a              ----------->GT1                                      <                  <---------TGA1a             <---------TOE2(3)                                     <                  <---------O2                <---------TOE1(3)                                     <                  ===============================bZIP_DOF                                           <             --------->ANAC58    --------->ANAC58                                                   <    --------->MYB52(1)           --------->ANAC58           --------->ANAC58                        < ===========================bZIP_DOF  <----------DOF2  --------->DAG2  ------->GAMYB            <---- ------>ANAC46    ===============================bZIP_DOF   --------->ANAC58         --------->ANAC46 -------GT1  --------->ANAC58    --------->bZIP60(2) ---------->DOF2--------->MYB52(1)          <----   acgacataacgtctcaagacaagtgagttaatgccacggccttttattgaggtaaaaaaggcacgaatgctaaccgaaaatcgttccaaacaacaattgc  10700          --------->AHL20(2) ---------ANAC55(2) ---------O2 ---------ANAC46                                                                           <--------- ---------ANAC58                                                                        ----------->GT1 ---------ANAC55(1)                                      <-----------GT1              ---------->DOF2 ---------ANAC58                        <---------WOX13(1)                    --------->YAB1 ---------bZIP60(2)            --------->ATHB12       <---------ICU4        --------->ANAC58       -- -----ANAC58                  <---------YAB1       --------->YAB1----------->RAV1(1)  =============== -----ANAC58                --------->YAB1        <---------ATHB12          --------->ANAC58<-------TEIL   ttacgtggacattttaaaacatctgttcaatggtcattggtgactgacttcaatgaaaattacattgcaacaatagccaagtatcacagaaagttacatt  10800                                                                      --------->MYB55(2)                                                                     <---------ANAC46                                                                    --------->ATERF1(1)                                                                    <------NtERF2                                                                  --------->ALFIN1                                                                  <---------ANAC46                                                                  <---------DEAR3(1)                                                                 --------->ATERF1(1)                                                                 <------NtERF2           <-----------HVH21                             <----------CDC5--------->ZAT18          --------->bZIP60(2)                  --------->LBD16 <---------DEAR3(1)          --------->ANAC58                    --------->ANAC46 --------->ALFIN1       <---------ARR14(2)          --------->TGA1a                    <---------LBD16  <------ZmHOX2a(1)       --------->ARR14(2)          <---------O2              --------->At5g28300  <------NtERF2<---------DEAR3(1)   <---------TOE1(2)          --------->ANAC46         ----------->GT1      --------->At4g35610      --------->ALFIN1          --------->ANAC58      --------->ARR14(2)      <---------At4g35610  <---------LBD16 <------ZmHOX2a(1) --GT1    --------->O2          <---------ARR14(2)     <---------DEAR3(1)--------->ALFIN1  <---------TOE2(2) --------->RAV1(1)         --------->AtLEC2<---------REM1(2)  =================================HOX2a_HOX2a ===================bZIP_DOF    --------->MYB52(1)  <---------DEAR3(1)<---------MYB46(3)------>ZmHOX2a(2)   gcaacaatttccacgtcaaatttctaaacatgcagaacggtaatttacacggggaaggcgctgaggaggcggagggtgctacggaggggatcgcaggaac  10900                                    <---------ANAC58                              <---------ARR11(3)                                          <-------TEIL                              --------->ARR11(3)                                        <---------SPL7                         <------NtERF2                                                ---------------                        ------>NtERF2              <---------MYB46(3)                 ---------------                       <---------DEAR3(1)    <------ZmHOX2a(1)                      <---------ETT(2)                       <---------RAP2.6(2)<---------HSFB2a(2)                       --------->ETT(2)              <---------ARR14(2)    <---------ANAC58                                <---------DEAR3(1)              --------->GLK1(2) ------>ZmHOX2a(2) --------->ALFIN1                  <---------WRKY12              --------->ARR14(2)====================HOX2a_HOX2a          ----------->RAV1(1) --------       --------->YAB1  --------->ATERF1(2)--------->HSFB2a(2)     --------->MYB52(1)<---------WRKY38(1)   accgatgaatgagaagaatccagaggcggcatgatcttgctcgtcgaggagagtggatgatgctctataaacggccaacaatatggtcgacgtacaccta  11000  Previous    Next  AGI:  At4g00020.1    Description:  BRCA2(IV)/BRCA2A/EDA20/MEE43 (BREAST CANCER 2 LIKE 2A); protein binding / single-stranded DNA binding. similar to BRCA2B (breast cancer 2 like 2B), protein binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT5G01630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48781.1); contains InterPro domain DNA recombination repair protein, BRCA2; (InterPro:IPR011370); contains InterPro domain Breast cancer type 2 susceptibility protein (InterPro:IPR015525); contains InterPro domain BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187); contains InterPro domain BRCA2 repeat (InterPro:IPR002093); contains Range:  from: 3895    to: 10455    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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